TcoF overview
TcoF: ALYREF
GeneID: 408
Name: THO complex subunit 4
Ensembl: ENSG00000183684
Species: Human
Class: class HC
Family: Others
Disease: 2
Go term: 21
Pathway: 7
Hallmark: --
Super Enhancer:

--
Enhancer:

chr17:79827830-79828510 chr17:80054330-80055990 chr17:80077190-80077980 chr17:79373720-79374510 chr17:79478140-79478210 chr17:79479170-79479250 chr17:79479390-79479640 chr17:79519080-79519190 chr17:79532630-79534440 chr17:79561790-79563140 chr17:79563270-79564270 chr17:79573840-79575750 chr17:79612660-79613460 chr17:79618180-79618670 chr17:79618710-79620180 chr17:79670610-79671270 chr17:79679550-79681980 chr17:79770130-79770450 chr17:79817260-79818200 chr17:79823540-79825590 chr17:79826950-79827040 chr17:79827110-79827200 chr17:79827500-79827610 chr17:79874350-79875490 chr17:79875840-79875910 chr17:79915780-79916210 chr17:79916270-79916810 chr17:79935620-79937050 chr17:79992080-79993750 chr17:79994890-79995330 chr17:79995420-79995500 chr17:80022950-80023480 chr17:80053350-80054190 chr17:80195770-80196570 chr17:80544080-80544930 chr17:80575270-80576210 chr17:79281640-79282980 chr17:79478650-79478920 chr17:78971140-78972160 chr17:79518230-79518750 chr17:79477860-79477950 chr17:79766960-79767650 chr17:79989670-79990260 chr17:79994630-79994730 chr17:79867480-79868770 chr17:79620400-79621610 chr17:79804510-79804820 chr17:79875600-79875700 chr17:79916870-79917340 chr17:79917440-79917510 chr17:79917560-79918460 chr17:79993940-79994060 chr17:80091280-80093670 chr17:80151710-80151850 chr17:80152020-80153130 chr17:80211120-80213300 chr17:80273310-80274070 chr17:80397590-80398870 chr17:80399140-80399670 chr17:80407170-80407300 chr17:80416710-80417860 chr17:80150020-80151630 chr17:80426770-80427930 chr17:80037160-80037230 chr17:79941540-79943380 chr17:80157190-80159410 chr17:79813160-79813320 chr17:79813460-79814600 chr17:79865130-79865420 chr17:79865470-79865640 chr17:79969480-79970100 chr17:79973230-79974350 chr17:79990340-79990580 chr17:79994520-79994590 chr17:79994180-79994250 chr17:79994320-79994410 chr17:80155560-80156180 chr17:80194750-80195010 chr17:79475450-79476990 chr17:80229020-80231180 chr17:79352290-79353520 chr17:79781390-79781870 chr17:79781920-79782160 chr17:80021400-80022000 chr17:80022110-80022690 chr17:80202710-80203850 chr17:79503290-79503570 chr17:79952760-79953860 chr17:80153240-80154710 chr17:80085780-80086360 chr17:80086470-80087720 chr17:80227010-80228930 chr17:79894070-79894620 chr17:79503820-79503900 chr17:79564990-79566210 chr17:80168180-80170660 chr17:80203920-80206300 chr17:80399770-80400050 chr17:79527360-79529220 chr17:80478180-80480380 chr17:79526440-79527330 chr17:79671460-79671660 chr17:79782430-79784250 chr17:79801970-79803010 chr17:79803110-79803430 chr17:79974990-79975180 chr17:79203280-79204340 chr17:79217890-79218610 chr17:79220470-79220680 chr17:79225410-79225990 chr17:79638860-79639100 chr17:79639190-79639520 chr17:79661000-79661840 chr17:79661880-79661950 chr17:79662250-79662810 chr17:79663030-79663380 chr17:79663560-79663630 chr17:79663780-79663850 chr17:79664030-79665400 chr17:79671750-79673930 chr17:79674070-79674150 chr17:79682100-79682500 chr17:79974400-79974670 chr17:79974750-79974810 chr17:79975280-79976270 chr17:79990700-79990820 chr17:79990890-79991310 chr17:79991480-79991570 chr17:80014650-80014710 chr17:80014850-80014920 chr17:80015350-80015740 chr17:80016130-80016210 chr17:80016290-80016650 chr17:80016690-80017820 chr17:80017970-80018570 chr17:80018660-80018740 chr17:80018840-80019080 chr17:80019600-80019770 chr17:80019860-80020730 chr17:80020850-80021340 chr17:80037480-80038010 chr17:80038120-80038240 chr17:80038470-80038560 chr17:80038800-80039030 chr17:80039230-80039470 chr17:80039720-80039880 chr17:80040040-80040190 chr17:80040290-80040400 chr17:80040560-80040780 chr17:80040990-80041070 chr17:80041300-80041390 chr17:80041520-80041640 chr17:80041770-80041850 chr17:80042030-80042100 chr17:80042260-80042380 chr17:80042590-80042670 chr17:80042830-80042910 chr17:80043030-80043110 chr17:80043280-80043350 chr17:80043750-80044120 chr17:80044440-80044920 chr17:80045130-80045200 chr17:80045380-80045560 chr17:80045740-80045820 chr17:80045910-80045990 chr17:80046180-80046260 chr17:80046440-80046630 chr17:80046750-80046840 chr17:80047050-80047120 chr17:80047260-80047500 chr17:80047600-80048250 chr17:80048440-80048750 chr17:80048950-80049090 chr17:80049560-80050330 chr17:80050470-80050570 chr17:80050690-80050770 chr17:80050900-80051090 chr17:80051300-80051470 chr17:80002300-80004760 chr17:80019230-80019490 chr17:80051650-80053190 chr17:79427420-79427550 chr17:79769440-79769520 chr17:79769690-79769760 chr17:79769820-79770050 chr17:80206890-80207300 chr17:79429070-79429760 chr17:79139550-79139730 chr17:79226480-79226870 chr17:79274140-79276620 chr17:79514700-79516230 chr17:79516390-79517270 chr17:79860400-79860490 chr17:79863320-79863540 chr17:79864780-79865070 chr17:79865730-79866440 chr17:79867200-79867380 chr17:79891250-79892200 chr17:79910110-79910380 chr17:79911140-79912130 chr17:79912170-79913270 chr17:79913420-79914520 chr17:79914630-79914750 chr17:79914950-79915680 chr17:79953940-79954290 chr17:79967070-79967360 chr17:79967440-79968670 chr17:79968740-79969410 chr17:80274290-80274540 chr17:80274860-80275280 chr17:80282770-80285020 chr17:80369410-80371250 chr17:80382380-80383700 chr17:80405490-80407040 chr17:79530900-79532530 chr17:79566840-79567360 chr17:79946910-79948090 chr17:79963190-79965630 chr17:80061110-80062530 chr17:80240810-80241980 chr17:79543280-79545540 chr17:79334020-79335200 chr17:79688450-79690200 chr17:79314380-79316260 chr17:80266280-80267290 chr17:80267490-80268730 chr17:80480660-80481230 chr17:79609480-79610030 chr17:79194220-79196560 chr17:79222980-79223830 chr17:79341010-79341330 chr17:79353680-79354280 chr17:79382680-79384590 chr17:79496380-79498260 chr17:79499590-79502070 chr17:79534560-79536040 chr17:79690260-79691530 chr17:79693980-79695180 chr17:79774590-79775150 chr17:79814740-79817050 chr17:79893390-79893990 chr17:79957500-79959990 chr17:80285900-80287510 chr17:80304000-80305320 chr17:80446530-80447710 chr17:80482230-80483550 chr17:79461360-79462640 chr17:79772630-79774420 chr17:80034110-80036210 chr17:80116350-80117230 chr17:80391700-80393560 chr17:79613640-79614480 chr17:80280890-80282450 chr17:79688050-79688370 chr17:79244820-79246310 chr17:79502240-79503170 chr17:79507980-79508330 chr17:79892370-79892520 chr17:79892620-79892800 chr17:80393750-80394540 chr17:80394620-80395040 chr17:80395240-80397500 chr17:79938190-79939270 chr17:80210480-80210890 chr17:80213450-80214100 chr17:80214640-80216000 chr17:80338610-80339820 chr17:80459160-80460700 chr17:79937120-79937880 chr17:79220860-79222930 chr17:79235200-79236480 chr17:79250540-79250830 chr17:79288280-79290140 chr17:79290200-79290770 chr17:79335690-79336930 chr17:79423220-79423320 chr17:79423610-79424430 chr17:79424620-79425190 chr17:79425490-79425640 chr17:79425750-79425830 chr17:79433390-79434860 chr17:79588020-79589190 chr17:79622430-79623100 chr17:79782280-79782370 chr17:79786470-79787420 chr17:79941160-79941400 chr17:80075630-80075910 chr17:80076020-80076950 chr17:80078950-80081430 chr17:80109320-80109870 chr17:80345270-80346720 chr17:80360640-80361810 chr17:80419400-80420620 chr17:80421620-80422160 chr17:80422310-80422850 chr17:80443820-80444610 chr17:80447820-80448680 chr17:80448740-80449450 chr17:79345600-79347990 chr17:79379580-79382000 chr17:80542060-80543770 chr17:79466090-79467700 chr17:80133250-80134780 chr17:79770540-79770680 chr17:79864430-79864630 chr17:79427730-79427890 chr17:79411850-79412040 chr17:79412200-79412370 chr17:79084310-79084710 chr17:79092240-79093170 chr17:79093380-79093730 chr17:79638620-79638770 chr17:79662100-79662190 chr17:79682620-79682720 chr17:79682770-79683030 chr17:79683080-79683840 chr17:79683880-79684030 chr17:79803870-79804300 chr17:79893020-79893210 chr17:80402470-80403730 chr17:80403840-80404490 chr17:80404570-80405450 chr17:79940080-79940730 chr17:80481750-80482080

--
Promoter:

chr17:79845711-79849462

False
 ChIP-seq based regulatory details of ALYREF
select * from encode where Experiment_target='ALYREF'
Sample ID Experiment target Biosample type Biosample term name GSM ID Tissue type Source
 Downstream target genes of ALYREF
 Protein-protein interaction of ALYREF
OFFICIAL_SYMBOL_A OFFICIAL_SYMBOL_B EXPERIMENTAL_SYSTEM PUBMED_ID ORGANISM_A_ID ORGANISM_B_ID SOURCE
ALYREF DDX39A Reconstituted Complex 15047853 9606 9606 BIOGRID
ALYREF DDX39B Reconstituted Complex 15047853 9606 9606 BIOGRID
ALYREF LEF1 Reconstituted Complex 9119228 9606 9606 BIOGRID
ALYREF RUNX2 Reconstituted Complex 9119228 9606 9606 BIOGRID
ALYREF ALYREF Reconstituted Complex 9119228 9606 9606 BIOGRID
ALYREF NCBP1 Affinity Capture-Western 18974867 9606 9606 BIOGRID
ALYREF THOC2 Affinity Capture-MS 15998806 9606 9606 BIOGRID
ALYREF THOC5 Affinity Capture-MS 15998806 9606 9606 BIOGRID
ALYREF THOC1 Affinity Capture-MS 15998806 9606 9606 BIOGRID
ALYREF THOC3 Affinity Capture-MS 15998806 9606 9606 BIOGRID
ALYREF THOC6 Affinity Capture-MS 15998806 9606 9606 BIOGRID
ALYREF THOC7 Affinity Capture-MS 15998806 9606 9606 BIOGRID
ALYREF DDX39B Affinity Capture-MS 15998806 9606 9606 BIOGRID
ALYREF ZC3H13 Affinity Capture-MS 15998806 9606 9606 BIOGRID
ALYREF KIAA1429 Affinity Capture-MS 15998806 9606 9606 BIOGRID
ALYREF ACIN1 Affinity Capture-MS 15998806 9606 9606 BIOGRID
ALYREF SRRM1 Affinity Capture-MS 15998806 9606 9606 BIOGRID
ALYREF SRRT Affinity Capture-MS 15998806 9606 9606 BIOGRID
ALYREF EFTUD2 Affinity Capture-MS 15998806 9606 9606 BIOGRID
ALYREF RBM15 Affinity Capture-MS 15998806 9606 9606 BIOGRID
ALYREF DDX3X Affinity Capture-MS 15998806 9606 9606 BIOGRID
ALYREF U2AF2 Affinity Capture-MS 15998806 9606 9606 BIOGRID
ALYREF SRSF2 Affinity Capture-MS 15998806 9606 9606 BIOGRID
ALYREF SRSF7 Affinity Capture-MS 15998806 9606 9606 BIOGRID
ALYREF SRSF1 Affinity Capture-MS 15998806 9606 9606 BIOGRID
ALYREF NR5A1 Affinity Capture-RNA 17190602 9606 9606 BIOGRID
ALYREF SMAD4 Affinity Capture-RNA 17190602 9606 9606 BIOGRID
ALYREF NCBP1 Affinity Capture-Western 17190602 9606 9606 BIOGRID
ALYREF DDX39B Affinity Capture-Western 17190602 9606 9606 BIOGRID
ALYREF THOC2 Affinity Capture-Western 17190602 9606 9606 BIOGRID
ALYREF THOC5 Affinity Capture-Western 17190602 9606 9606 BIOGRID
ALYREF THOC2 Reconstituted Complex 17190602 9606 9606 BIOGRID
ALYREF THOC5 Reconstituted Complex 17190602 9606 9606 BIOGRID
ALYREF THOC1 Reconstituted Complex 17190602 9606 9606 BIOGRID
ALYREF DDX39B Reconstituted Complex 17190602 9606 9606 BIOGRID
ALYREF THOC3 Reconstituted Complex 17190602 9606 9606 BIOGRID
ALYREF THOC6 Reconstituted Complex 17190602 9606 9606 BIOGRID
ALYREF THOC7 Reconstituted Complex 17190602 9606 9606 BIOGRID
ALYREF NCBP1 Reconstituted Complex 17190602 9606 9606 BIOGRID
ALYREF THOC5 Reconstituted Complex 19165146 9606 9606 BIOGRID
ALYREF NXF1 Reconstituted Complex 19165146 9606 9606 BIOGRID
ALYREF DDX39B Co-fractionation 22939629 9606 9606 BIOGRID
ALYREF YBX1 Co-fractionation 22939629 9606 9606 BIOGRID
ALYREF TLE3 Co-fractionation 22939629 9606 9606 BIOGRID
ALYREF WDR35 Co-fractionation 22939629 9606 9606 BIOGRID
ALYREF UGGT1 Co-fractionation 22939629 9606 9606 BIOGRID
ALYREF TRIP12 Co-fractionation 22939629 9606 9606 BIOGRID
ALYREF ATP6V1E1 Co-fractionation 22939629 9606 9606 BIOGRID
ALYREF TRIP13 Co-fractionation 22939629 9606 9606 BIOGRID
ALYREF UBA5 Co-fractionation 22939629 9606 9606 BIOGRID
ALYREF UBE2I Co-fractionation 22939629 9606 9606 BIOGRID
ALYREF ERCC4 Co-fractionation 22939629 9606 9606 BIOGRID
ALYREF IL7R Protein-RNA 23151878 9606 9606 BIOGRID
ALYREF THOC2 Affinity Capture-Western 23222130 9606 9606 BIOGRID
ALYREF DDX39B Affinity Capture-Western 23222130 9606 9606 BIOGRID
ALYREF THOC3 Affinity Capture-Western 23222130 9606 9606 BIOGRID
ALYREF THOC5 Affinity Capture-Western 23222130 9606 9606 BIOGRID
ALYREF DDX39B Reconstituted Complex 23222130 9606 9606 BIOGRID
ALYREF NCBP1 Affinity Capture-Western 23222130 9606 9606 BIOGRID
ALYREF AKT1 Affinity Capture-Western 18562279 9606 9606 BIOGRID
ALYREF AKT1 Reconstituted Complex 18562279 9606 9606 BIOGRID
ALYREF CSNK1E Co-fractionation 26344197 9606 9606 BIOGRID
ALYREF GNL1 Co-fractionation 26344197 9606 9606 BIOGRID
ALYREF NAA16 Co-fractionation 26344197 9606 9606 BIOGRID
ALYREF NAP1L1 Co-fractionation 26344197 9606 9606 BIOGRID
ALYREF NOP2 Co-fractionation 26344197 9606 9606 BIOGRID
ALYREF PABPC1 Co-fractionation 26344197 9606 9606 BIOGRID
ALYREF PABPC4 Co-fractionation 26344197 9606 9606 BIOGRID
ALYREF XRN1 Co-fractionation 26344197 9606 9606 BIOGRID
ALYREF LSM4 Affinity Capture-MS 27173435 9606 9606 BIOGRID
ALYREF LSM8 Affinity Capture-MS 27173435 9606 9606 BIOGRID
ALYREF FAU Affinity Capture-MS 27173435 9606 9606 BIOGRID
ALYREF LSM6 Affinity Capture-MS 27173435 9606 9606 BIOGRID
ALYREF IWS1 Affinity Capture-Western 24462114 9606 9606 BIOGRID
ALYREF POLR2A Affinity Capture-Western 24462114 9606 9606 BIOGRID
ALYREF C17orf85 Affinity Capture-MS 30833792 9606 9606 BIOGRID
ALYREF C1QBP Affinity Capture-MS 30833792 9606 9606 BIOGRID
ALYREF CLTB Affinity Capture-MS 30833792 9606 9606 BIOGRID
ALYREF DAP3 Affinity Capture-MS 30833792 9606 9606 BIOGRID
ALYREF ERAL1 Affinity Capture-MS 30833792 9606 9606 BIOGRID
ALYREF ERH Affinity Capture-MS 30833792 9606 9606 BIOGRID
ALYREF FAM120A Affinity Capture-MS 30833792 9606 9606 BIOGRID
ALYREF HNRNPL Affinity Capture-MS 30833792 9606 9606 BIOGRID
ALYREF MAP7 Affinity Capture-MS 30833792 9606 9606 BIOGRID
ALYREF MRPL1 Affinity Capture-MS 30833792 9606 9606 BIOGRID
ALYREF MRPL11 Affinity Capture-MS 30833792 9606 9606 BIOGRID
ALYREF MRPL15 Affinity Capture-MS 30833792 9606 9606 BIOGRID
ALYREF MRPL18 Affinity Capture-MS 30833792 9606 9606 BIOGRID
ALYREF MRPL28 Affinity Capture-MS 30833792 9606 9606 BIOGRID
ALYREF MRPL3 Affinity Capture-MS 30833792 9606 9606 BIOGRID
ALYREF MRPL30 Affinity Capture-MS 30833792 9606 9606 BIOGRID
ALYREF MRPL43 Affinity Capture-MS 30833792 9606 9606 BIOGRID
ALYREF MRPL45 Affinity Capture-MS 30833792 9606 9606 BIOGRID
ALYREF MRPL49 Affinity Capture-MS 30833792 9606 9606 BIOGRID
ALYREF MRPL50 Affinity Capture-MS 30833792 9606 9606 BIOGRID
ALYREF MRPL51 Affinity Capture-MS 30833792 9606 9606 BIOGRID
ALYREF MRPL52 Affinity Capture-MS 30833792 9606 9606 BIOGRID
ALYREF MRPL9 Affinity Capture-MS 30833792 9606 9606 BIOGRID
ALYREF MRPS15 Affinity Capture-MS 30833792 9606 9606 BIOGRID
ALYREF MRPS16 Affinity Capture-MS 30833792 9606 9606 BIOGRID
ALYREF MRPS18B Affinity Capture-MS 30833792 9606 9606 BIOGRID
ALYREF MRPS18C Affinity Capture-MS 30833792 9606 9606 BIOGRID
ALYREF MRPS2 Affinity Capture-MS 30833792 9606 9606 BIOGRID
ALYREF MRPS22 Affinity Capture-MS 30833792 9606 9606 BIOGRID
ALYREF MRPS23 Affinity Capture-MS 30833792 9606 9606 BIOGRID
ALYREF MRPS25 Affinity Capture-MS 30833792 9606 9606 BIOGRID
ALYREF MRPS26 Affinity Capture-MS 30833792 9606 9606 BIOGRID
ALYREF MRPS27 Affinity Capture-MS 30833792 9606 9606 BIOGRID
ALYREF MRPS28 Affinity Capture-MS 30833792 9606 9606 BIOGRID
ALYREF MRPS31 Affinity Capture-MS 30833792 9606 9606 BIOGRID
ALYREF MRPS34 Affinity Capture-MS 30833792 9606 9606 BIOGRID
ALYREF MRPS35 Affinity Capture-MS 30833792 9606 9606 BIOGRID
ALYREF MRPS5 Affinity Capture-MS 30833792 9606 9606 BIOGRID
ALYREF MRPS6 Affinity Capture-MS 30833792 9606 9606 BIOGRID
ALYREF MRPS7 Affinity Capture-MS 30833792 9606 9606 BIOGRID
ALYREF MRPS9 Affinity Capture-MS 30833792 9606 9606 BIOGRID
ALYREF MYH10 Affinity Capture-MS 30833792 9606 9606 BIOGRID
ALYREF NUMA1 Affinity Capture-MS 30833792 9606 9606 BIOGRID
ALYREF POLDIP3 Affinity Capture-MS 30833792 9606 9606 BIOGRID
ALYREF PRMT1 Affinity Capture-MS 30833792 9606 9606 BIOGRID
ALYREF PTCD3 Affinity Capture-MS 30833792 9606 9606 BIOGRID
ALYREF RBM17 Affinity Capture-MS 30833792 9606 9606 BIOGRID
ALYREF SNRPD2 Affinity Capture-MS 30833792 9606 9606 BIOGRID
ALYREF THOC1 Affinity Capture-MS 30833792 9606 9606 BIOGRID
ALYREF THOC2 Affinity Capture-MS 30833792 9606 9606 BIOGRID
ALYREF THOC7 Affinity Capture-MS 30833792 9606 9606 BIOGRID
ALYREF THRAP3 Affinity Capture-MS 30833792 9606 9606 BIOGRID
ALYREF ZC3HAV1 Affinity Capture-MS 30833792 9606 9606 BIOGRID
ALYREF ORF57 Affinity Capture-Western 18974867 9606 37296 BIOGRID
 Annotation of ALYREF
 TCGA cancer survival map of ALYREF


Calculate the hazards ratio based on Cox PH Model.
Add the 95% CI as dotted line.
Reset Add The plot axis-x order will follow the list.


Calculate the hazards ratio based on Cox PH Model.
We use log2(TPM + 1) for log-scale.
All Add
Reset The plot is based on the datasets of list.


 Disease information of  ALYREF