TcoF overview
TcoF: BRD3
GeneID: 23019
Name: Bromodomain-containing protein 3
Ensembl: ENSG00000169925
Species: Human
Class: class 1
Family: Bromodomain
Disease: 8
Go term: 5
Pathway: --
Hallmark: --
Super Enhancer:

chr9:136904463-136934225 chr9:136913824-136934451 chr9:136909120-136944082 chr9:136917526-136934650 chr9:136918029-136934417 chr9:136904848-136932503 chr9:136913423-136922260 chr9:136889544-136944540 chr9:136893678-136934356 chr9:136893397-136934497 chr9:136893775-136935570

Enhancer:

chr9:136814680-136817100 chr9:136890660-136890960 chr9:136891210-136891320 chr9:136335910-136336210 chr9:136341460-136342150 chr9:136400040-136401680 chr9:136644010-136645030 chr9:136645060-136645810 chr9:136649540-136650890 chr9:136912040-136912550 chr9:136912590-136912860 chr9:136601840-136603370 chr9:136678620-136680830 chr9:136724760-136726490 chr9:136729820-136730020 chr9:136750370-136750970 chr9:136924300-136926040 chr9:136926190-136928560 chr9:136929880-136930390 chr9:137027180-137029560 chr9:136854720-136857190 chr9:136913580-136915490 chr9:136915710-136916680 chr9:136905400-136906880 chr9:136790350-136792840 chr9:136812170-136814340 chr9:136823880-136824630 chr9:136825450-136826420 chr9:136833010-136834750 chr9:136272200-136272930 chr9:137021720-137023010 chr9:137326050-137328310 chr9:136527530-136528680 chr9:137005930-137006630 chr9:136704260-136706470 chr9:136762110-136764150 chr9:136566080-136568030 chr9:136771360-136771580 chr9:136771750-136773420 chr9:136776650-136777000 chr9:136782130-136783940 chr9:136707020-136707550 chr9:136738200-136740700 chr9:137243480-137245850 chr9:137245870-137247340 chr9:137250120-137251040 chr9:137251240-137251920 chr9:137261150-137262690 chr9:137265650-137266140 chr9:137299340-137299990 chr9:137300150-137300780 chr9:137300970-137303290 chr9:137304910-137307040 chr9:137248360-137249500 chr9:136342360-136343370 chr9:136409670-136412150 chr9:136439110-136439860 chr9:136568150-136570060 chr9:136641710-136642510 chr9:136642590-136643880 chr9:136648710-136649430 chr9:136653610-136654370 chr9:136654470-136656900 chr9:135960430-135961640 chr9:136834990-136836080 chr9:136613500-136615990 chr9:136619700-136620280 chr9:136683520-136684370 chr9:136719590-136719800 chr9:137323840-137325940 chr9:137338030-137340300 chr9:137340650-137343100 chr9:137368220-137368700 chr9:137393590-137395970 chr9:136740930-136742680 chr9:137481970-137482830 chr9:137483190-137484970 chr9:137514660-137515870 chr9:137516510-137517420 chr9:137518330-137518850 chr9:137534140-137536140 chr9:137396180-137396870 chr9:137493410-137495270 chr9:136547920-136550240 chr9:136599330-136601550 chr9:137307390-137309000 chr9:137276430-137278900 chr9:137279990-137281260 chr9:136638790-136640050 chr9:136734310-136735970 chr9:136871950-136873020 chr9:136917680-136918380 chr9:137016110-137016520

Promoter:

chr9:136895427-136933657

 ChIP-seq based regulatory details of BRD3
Sample ID Experiment target Biosample type Biosample term name GSM ID Tissue type Source
TcoF_00_20984 BRD3 cell line MM1.S GSM1247828 Blood Cistrome
TcoF_00_20985 BRD3 cell line MM1.S GSM1247829 Blood Cistrome
TcoF_00_40747 BRD3 cell line MM1-S GSM1247829 Blood ReMap
TcoF_00_20986 BRD3 cell line MM1.S GSM1247830 Blood Cistrome
TcoF_00_20987 BRD3 cell line MM1.S GSM1247831 Blood Cistrome
TcoF_00_21421 BRD3 cell line VCaP GSM1328972 Prostate Cistrome
TcoF_00_21422 BRD3 cell line VCaP GSM1328973 Prostate Cistrome
TcoF_00_21423 BRD3 cell line VCaP GSM1328974 Prostate Cistrome
TcoF_00_20867 BRD3 cell line LX2 GSM1416807 None Cistrome
TcoF_00_20868 BRD3 cell line LX2 GSM1416808 None Cistrome
TcoF_00_20344 BRD3 cell line H9 GSM1466839 Embryo Cistrome
TcoF_00_40844 BRD3 cell line HUVEC-C GSM1466839 Cardiovascular ReMap
TcoF_00_20345 BRD3 cell line H9 GSM1466840 Embryo Cistrome
TcoF_00_40845 BRD3 cell line HUVEC-C_MS417 GSM1466840 Cardiovascular ReMap
TcoF_00_20084 BRD3 cell line 10326 GSM1820953 None Cistrome
TcoF_00_21026 BRD3 cell line MutuI GSM2229486 None Cistrome
TcoF_00_21027 BRD3 cell line MutuI GSM2229487 None Cistrome
TcoF_00_40349 BRD3 cell line U-87MG_GBM GSM2634753 Brain ReMap
TcoF_00_40350 BRD3 cell line U-87MG_GBM_dBET6_1d GSM2634754 Brain ReMap
TcoF_00_40351 BRD3 cell line U-87MG_GBM_dBET6_2h GSM2634755 Brain ReMap
TcoF_00_30021 BRD3 cell line A549 GSM3386106 Lung ChIP-Atlas
TcoF_00_40666 BRD3 cell line A-549 GSM3386106 Lung ReMap
TcoF_00_20412 BRD3 cell line HEK293 GSM971947 Embryonic Kidney Cistrome
TcoF_00_40721 BRD3 cell line HEK293T GSM971947 Embryonic Kidney ReMap
 Downstream target genes of BRD3
 Protein-protein interaction of BRD3
OFFICIAL_SYMBOL_A OFFICIAL_SYMBOL_B EXPERIMENTAL_SYSTEM PUBMED_ID ORGANISM_A_ID ORGANISM_B_ID SOURCE
BRD3 APP Reconstituted Complex 21832049 9606 9606 BIOGRID
BRD3 YEATS4 Co-fractionation 22939629 9606 9606 BIOGRID
BRD3 RUVBL2 Co-fractionation 26344197 9606 9606 BIOGRID
BRD3 BRD2 Affinity Capture-MS 28514442 9606 9606 BIOGRID
BRD3 IGHA2 Affinity Capture-MS 28514442 9606 9606 BIOGRID
BRD3 KDM4C Negative Genetic 26864203 9606 9606 BIOGRID
BRD3 SPOP Affinity Capture-Western 28805822 9606 9606 BIOGRID
BRD3 SPOP Affinity Capture-Western 28805821 9606 9606 BIOGRID
BRD3 SPOP Reconstituted Complex 31026449 9606 9606 BIOGRID
BRD3 ATAD5 Affinity Capture-MS 31753913 9606 9606 BIOGRID
BRD3 ZMYND8 Affinity Capture-MS 31753913 9606 9606 BIOGRID
BRD3 PRPF40A Affinity Capture-MS 31753913 9606 9606 BIOGRID
BRD3 CSNK2A1 Affinity Capture-MS 31753913 9606 9606 BIOGRID
BRD3 RSF1 Affinity Capture-MS 31753913 9606 9606 BIOGRID
BRD3 RBM25 Affinity Capture-MS 31753913 9606 9606 BIOGRID
BRD3 WHSC1L1 Affinity Capture-MS 31753913 9606 9606 BIOGRID
BRD3 ZNF592 Affinity Capture-MS 31753913 9606 9606 BIOGRID
BRD3 NFRKB Affinity Capture-MS 31753913 9606 9606 BIOGRID
BRD3 PIP4K2A Affinity Capture-MS 31753913 9606 9606 BIOGRID
BRD3 NPM1 Affinity Capture-MS 31753913 9606 9606 BIOGRID
BRD3 H2AFX Affinity Capture-MS 31753913 9606 9606 BIOGRID
BRD3 H2AFY Affinity Capture-MS 31753913 9606 9606 BIOGRID
BRD3 PRPF4B Affinity Capture-MS 31753913 9606 9606 BIOGRID
BRD3 RBBP6 Affinity Capture-MS 31753913 9606 9606 BIOGRID
BRD3 BRD2 Affinity Capture-MS 31753913 9606 9606 BIOGRID
BRD3 ZNF687 Affinity Capture-MS 31753913 9606 9606 BIOGRID
BRD3 WHSC1 Affinity Capture-MS 31753913 9606 9606 BIOGRID
BRD3 GLTSCR1 Affinity Capture-MS 31753913 9606 9606 BIOGRID
BRD3 HIST2H2AB Affinity Capture-MS 31753913 9606 9606 BIOGRID
BRD3 SRRM1 Affinity Capture-MS 31753913 9606 9606 BIOGRID
BRD3 LUC7L2 Affinity Capture-MS 31753913 9606 9606 BIOGRID
BRD3 PIP4K2B Affinity Capture-MS 31753913 9606 9606 BIOGRID
BRD3 CSNK2B Affinity Capture-MS 31753913 9606 9606 BIOGRID
BRD3 SRRM2 Affinity Capture-MS 31753913 9606 9606 BIOGRID
BRD3 RFC4 Affinity Capture-MS 31753913 9606 9606 BIOGRID
BRD3 GATAD2A Affinity Capture-MS 31753913 9606 9606 BIOGRID
BRD3 SET Affinity Capture-MS 31753913 9606 9606 BIOGRID
BRD3 PIP4K2C Affinity Capture-MS 31753913 9606 9606 BIOGRID
BRD3 CHD9 Affinity Capture-MS 31753913 9606 9606 BIOGRID
BRD3 TP53 Affinity Capture-MS 31753913 9606 9606 BIOGRID
BRD3 EPB41L3 Affinity Capture-MS 31753913 9606 9606 BIOGRID
BRD3 PRPF3 Affinity Capture-MS 31753913 9606 9606 BIOGRID
BRD3 CSNK2A2 Affinity Capture-MS 31753913 9606 9606 BIOGRID
BRD3 INO80 Affinity Capture-MS 31753913 9606 9606 BIOGRID
BRD3 TAF4 Affinity Capture-MS 31753913 9606 9606 BIOGRID
BRD3 BRD9 Affinity Capture-MS 31753913 9606 9606 BIOGRID
BRD3 ACTR8 Affinity Capture-MS 31753913 9606 9606 BIOGRID
BRD3 RFC2 Affinity Capture-MS 31753913 9606 9606 BIOGRID
BRD3 CHD8 Affinity Capture-MS 31753913 9606 9606 BIOGRID
BRD3 SMARCD1 Affinity Capture-MS 31753913 9606 9606 BIOGRID
BRD3 PTRF Affinity Capture-MS 31753913 9606 9606 BIOGRID
BRD3 TAF1 Affinity Capture-MS 31753913 9606 9606 BIOGRID
BRD3 TSPYL2 Affinity Capture-MS 31753913 9606 9606 BIOGRID
BRD3 TAF6 Affinity Capture-MS 31753913 9606 9606 BIOGRID
BRD3 TAF8 Affinity Capture-MS 31753913 9606 9606 BIOGRID
BRD3 RSBN1 Affinity Capture-MS 31753913 9606 9606 BIOGRID
BRD3 TAF3 Affinity Capture-MS 31753913 9606 9606 BIOGRID
BRD3 KDM1B Affinity Capture-MS 31753913 9606 9606 BIOGRID
BRD3 SRPK2 Affinity Capture-MS 31753913 9606 9606 BIOGRID
BRD3 SON Affinity Capture-MS 31753913 9606 9606 BIOGRID
BRD3 VANGL1 Affinity Capture-MS 31753913 9606 9606 BIOGRID
BRD3 WIZ Affinity Capture-MS 31753913 9606 9606 BIOGRID
BRD3 ZNF711 Affinity Capture-MS 31753913 9606 9606 BIOGRID
BRD3 SFSWAP Affinity Capture-MS 31753913 9606 9606 BIOGRID
BRD3 FIP1L1 Affinity Capture-MS 31753913 9606 9606 BIOGRID
BRD3 TAF9 Affinity Capture-MS 31753913 9606 9606 BIOGRID
BRD3 LARP7 Affinity Capture-MS 31753913 9606 9606 BIOGRID
BRD3 ACTR5 Affinity Capture-MS 31753913 9606 9606 BIOGRID
BRD3 H2AFY2 Affinity Capture-MS 31753913 9606 9606 BIOGRID
BRD3 PWWP2B Affinity Capture-MS 31753913 9606 9606 BIOGRID
BRD3 SREK1 Affinity Capture-MS 31753913 9606 9606 BIOGRID
BRD3 C1orf35 Affinity Capture-MS 31753913 9606 9606 BIOGRID
BRD3 SRSF9 Affinity Capture-MS 31753913 9606 9606 BIOGRID
BRD3 MECP2 Affinity Capture-MS 31753913 9606 9606 BIOGRID
BRD3 MEPCE Affinity Capture-MS 31753913 9606 9606 BIOGRID
BRD3 RSBN1L Affinity Capture-MS 31753913 9606 9606 BIOGRID
BRD3 RSRC2 Affinity Capture-MS 31753913 9606 9606 BIOGRID
BRD3 INO80B Affinity Capture-MS 31753913 9606 9606 BIOGRID
BRD3 INO80C Affinity Capture-MS 31753913 9606 9606 BIOGRID
BRD3 TAF5 Affinity Capture-MS 31753913 9606 9606 BIOGRID
BRD3 KNOP1 Affinity Capture-MS 31753913 9606 9606 BIOGRID
BRD3 EHMT2 Affinity Capture-MS 31753913 9606 9606 BIOGRID
BRD3 AGAP3 Affinity Capture-MS 31753913 9606 9606 BIOGRID
BRD3 RAB11FIP5 Affinity Capture-MS 31753913 9606 9606 BIOGRID
BRD3 TAF2 Affinity Capture-MS 31753913 9606 9606 BIOGRID
BRD3 RAB11FIP1 Affinity Capture-MS 31753913 9606 9606 BIOGRID
BRD3 RNPS1 Affinity Capture-MS 31753913 9606 9606 BIOGRID
BRD3 C1orf226 Affinity Capture-MS 31753913 9606 9606 BIOGRID
BRD3 CBX3 Affinity Capture-MS 31753913 9606 9606 BIOGRID
BRD3 MCRS1 Affinity Capture-MS 31753913 9606 9606 BIOGRID
BRD3 SCAF1 Affinity Capture-MS 31753913 9606 9606 BIOGRID
BRD3 EHMT1 Affinity Capture-MS 31753913 9606 9606 BIOGRID
BRD3 DDX41 Affinity Capture-MS 31753913 9606 9606 BIOGRID
BRD3 VANGL2 Affinity Capture-MS 31753913 9606 9606 BIOGRID
BRD3 MBD3 Affinity Capture-MS 31753913 9606 9606 BIOGRID
BRD3 INO80D Affinity Capture-MS 31753913 9606 9606 BIOGRID
BRD3 NOS1AP Affinity Capture-MS 31753913 9606 9606 BIOGRID
BRD3 TAF7 Affinity Capture-MS 31753913 9606 9606 BIOGRID
BRD3 TAF1C Affinity Capture-MS 31753913 9606 9606 BIOGRID
BRD3 INO80E Affinity Capture-MS 31753913 9606 9606 BIOGRID
BRD3 NKAP Affinity Capture-MS 31753913 9606 9606 BIOGRID
BRD3 BCL7A Affinity Capture-MS 31753913 9606 9606 BIOGRID
BRD3 CBX4 Affinity Capture-MS 31753913 9606 9606 BIOGRID
BRD3 TFPT Affinity Capture-MS 31753913 9606 9606 BIOGRID
BRD3 MFAP1 Affinity Capture-MS 31753913 9606 9606 BIOGRID
BRD3 FAU Affinity Capture-MS 31753913 9606 9606 BIOGRID
BRD3 RASAL3 Affinity Capture-MS 31753913 9606 9606 BIOGRID
BRD3 ARGLU1 Affinity Capture-MS 31753913 9606 9606 BIOGRID
BRD3 GTF2H1 Affinity Capture-MS 31753913 9606 9606 BIOGRID
BRD3 TAF9B Affinity Capture-MS 31753913 9606 9606 BIOGRID
BRD3 PRPF40B Affinity Capture-MS 31753913 9606 9606 BIOGRID
BRD3 ZNF518A Affinity Capture-MS 31753913 9606 9606 BIOGRID
BRD3 RAI1 Affinity Capture-MS 31753913 9606 9606 BIOGRID
BRD3 HMGXB4 Affinity Capture-MS 31753913 9606 9606 BIOGRID
BRD3 ARL6IP4 Affinity Capture-MS 31753913 9606 9606 BIOGRID
BRD3 ABCA12 Affinity Capture-MS 31753913 9606 9606 BIOGRID
BRD3 LTBP4 Affinity Capture-MS 31753913 9606 9606 BIOGRID
BRD3 LZTR1 Affinity Capture-MS 31753913 9606 9606 BIOGRID
BRD3 TC2N Affinity Capture-MS 31753913 9606 9606 BIOGRID
BRD3 SAP30BP Affinity Capture-MS 31753913 9606 9606 BIOGRID
BRD3 CHAMP1 Affinity Capture-MS 31753913 9606 9606 BIOGRID
BRD3 AKAP17A Affinity Capture-MS 31753913 9606 9606 BIOGRID
BRD3 TAF11 Affinity Capture-MS 31753913 9606 9606 BIOGRID
BRD3 SUV420H1 Affinity Capture-MS 31753913 9606 9606 BIOGRID
BRD3 ZNF740 Affinity Capture-MS 31753913 9606 9606 BIOGRID
BRD3 ZKSCAN5 Affinity Capture-MS 31753913 9606 9606 BIOGRID
BRD3 ZFP91 Affinity Capture-MS 31753913 9606 9606 BIOGRID
BRD3 FAM92A1 Affinity Capture-MS 31753913 9606 9606 BIOGRID
BRD3 SURF6 Affinity Capture-MS 31753913 9606 9606 BIOGRID
BRD3 PRSS56 Affinity Capture-MS 31753913 9606 9606 BIOGRID
BRD3 PLD1 Affinity Capture-MS 31753913 9606 9606 BIOGRID
BRD3 ZNF618 Affinity Capture-MS 31753913 9606 9606 BIOGRID
BRD3 PROX1 Affinity Capture-MS 31753913 9606 9606 BIOGRID
BRD3 NFKBIL1 Affinity Capture-MS 31753913 9606 9606 BIOGRID
BRD3 SETD5 Affinity Capture-MS 31753913 9606 9606 BIOGRID
BRD3 TAF4B Affinity Capture-MS 31753913 9606 9606 BIOGRID
BRD3 FIBP Affinity Capture-MS 31753913 9606 9606 BIOGRID
BRD3 SS18L1 Affinity Capture-MS 31753913 9606 9606 BIOGRID
BRD3 BCAS2 Affinity Capture-MS 31753913 9606 9606 BIOGRID
BRD3 SLC4A1 Affinity Capture-MS 31753913 9606 9606 BIOGRID
BRD3 ADH4 Affinity Capture-MS 31753913 9606 9606 BIOGRID
BRD3 FOXA1 Affinity Capture-MS 31753913 9606 9606 BIOGRID
BRD3 TAF10 Affinity Capture-MS 31753913 9606 9606 BIOGRID
BRD3 RCN2 Affinity Capture-MS 31753913 9606 9606 BIOGRID
BRD3 SS18 Affinity Capture-MS 31753913 9606 9606 BIOGRID
BRD3 TIGD5 Affinity Capture-MS 31753913 9606 9606 BIOGRID
BRD3 ISLR2 Affinity Capture-MS 31753913 9606 9606 BIOGRID
BRD3 C2CD5 Affinity Capture-MS 31753913 9606 9606 BIOGRID
BRD3 SNIP1 Affinity Capture-MS 31753913 9606 9606 BIOGRID
BRD3 EVI5L Affinity Capture-MS 31753913 9606 9606 BIOGRID
BRD3 TCTN2 Affinity Capture-MS 31753913 9606 9606 BIOGRID
BRD3 ABHD8 Affinity Capture-MS 31753913 9606 9606 BIOGRID
BRD3 FMNL2 Affinity Capture-MS 31753913 9606 9606 BIOGRID
BRD3 CCNL2 Affinity Capture-MS 31753913 9606 9606 BIOGRID
BRD3 TEP1 Affinity Capture-MS 31753913 9606 9606 BIOGRID
BRD3 BUD13 Affinity Capture-MS 31753913 9606 9606 BIOGRID
BRD3 ANKRD2 Affinity Capture-MS 31753913 9606 9606 BIOGRID
BRD3 TSPYL1 Affinity Capture-MS 31753913 9606 9606 BIOGRID
BRD3 CAAP1 Affinity Capture-MS 31753913 9606 9606 BIOGRID
BRD3 JPH1 Affinity Capture-MS 31753913 9606 9606 BIOGRID
BRD3 TOPORS Affinity Capture-MS 31753913 9606 9606 BIOGRID
BRD3 LYAR Affinity Capture-MS 31753913 9606 9606 BIOGRID
BRD3 TSR3 Affinity Capture-MS 31753913 9606 9606 BIOGRID
BRD3 ISY1 Affinity Capture-MS 31753913 9606 9606 BIOGRID
BRD3 SCML1 Affinity Capture-MS 31753913 9606 9606 BIOGRID
BRD3 U2AF2 Affinity Capture-MS 31753913 9606 9606 BIOGRID
BRD3 MTA1 Affinity Capture-MS 31753913 9606 9606 BIOGRID
BRD3 SART1 Affinity Capture-MS 31753913 9606 9606 BIOGRID
BRD3 ZC3H4 Affinity Capture-MS 31753913 9606 9606 BIOGRID
BRD3 TBC1D10B Affinity Capture-MS 31753913 9606 9606 BIOGRID
BRD3 CALU Affinity Capture-MS 31753913 9606 9606 BIOGRID
BRD3 AKAP8L Affinity Capture-MS 31753913 9606 9606 BIOGRID
BRD3 AGTPBP1 Affinity Capture-MS 31753913 9606 9606 BIOGRID
BRD3 SIGLEC1 Affinity Capture-MS 31753913 9606 9606 BIOGRID
 Annotation of BRD3
 TCGA cancer survival map of BRD3


Calculate the hazards ratio based on Cox PH Model.
Add the 95% CI as dotted line.
Reset Add The plot axis-x order will follow the list.


Calculate the hazards ratio based on Cox PH Model.
We use log2(TPM + 1) for log-scale.
All Add
Reset The plot is based on the datasets of list.


 Disease information of  BRD3