TcoF overview
| TcoF: | CDK5RAP3 | |
| GeneID: | 1063 | |
| Name: | CDK5 regulatory subunit-associated protein 3 | |
| Ensembl: | ENSG00000108465 | |
| Species: | Human | |
| Class: | class HC | |
| Family: | Cyclin | |
| Disease: | 0 | |
| Go term: | 36 | |
| Pathway: | -- | |
| Hallmark: | 1 | |
| Super Enhancer: |
chr17:46026034-46045650 chr17:46025621-46045678 chr17:46025046-46046839 chr17:46025146-46045630 chr17:46025591-46045699 chr17:46025370-46045879 chr17:46025872-46035946 chr17:46026152-46046815 chr17:46025653-46045887 chr17:46023754-46035938 chr17:46023935-46033715 chr17:46006073-46046608 chr17:46024635-46043358 chr17:46023907-46045683 chr17:46024951-46045534 chr17:46025265-46043578 chr17:46026399-46045746 chr17:46025265-46045533 chr17:46025845-46045660 chr17:46024478-46045641 chr17:46059158-46102544 chr17:46064361-46082571 chr17:46059625-46094183 chr17:46062978-46082591 chr17:46063349-46093206 chr17:46063504-46082974 chr17:46060665-46101809 chr17:46063535-46092764 chr17:46066525-46095863 chr17:46060065-46101534 chr17:46059279-46103432 chr17:46062730-46084204 chr17:46063582-46094116 chr17:46063016-46083433 chr17:46067949-46094372 chr17:46068578-46081633 chr17:46059045-46093907 chr17:46047106-46095427 chr17:46058625-46089610 chr17:46057802-46101433 chr17:46055672-46102335 chr17:46057675-46101912 chr17:46058418-46102227 chr17:46055666-46102387 chr17:46057785-46102320 chr17:46055829-46101944 chr17:46055596-46102264 chr17:46055606-46102092 chr17:46047142-46102204 chr17:46047115-46102450 chr17:46055559-46102017 chr17:46055621-46096539 chr17:46048049-46102346 chr17:46052438-46103430 chr17:46055572-46102260 chr17:46058468-46102636 chr17:46055402-46102454 chr17:46052233-46102144 chr17:46057766-46102128 chr17:46055750-46102128 chr17:46055659-46102405 chr17:46055539-46096212 chr17:46047554-46082322 chr17:46055685-46103420 chr17:46054899-46104574 chr17:46021276-46069870 chr17:46021495-46096021 chr17:46046612-46104969 chr17:46055543-46105359 chr17:46025749-46104676 chr17:46076334-46082938 chr17:46057166-46104901 chr17:46055639-46104902 chr17:46055491-46103750 chr17:46055714-46104563 chr17:46043130-46104674 chr17:46025858-46102546 chr17:46046232-46104700 chr17:46055729-46103790 chr17:46047282-46104855 chr17:46047063-46105057 chr17:46055394-46104982 chr17:46056778-46103799 chr17:46079108-46082979 chr17:46050494-46104882 chr17:46051085-46104766 |
|
| Enhancer: |
chr17:45886840-45887950 chr17:45897730-45899030 chr17:45918210-45918570 chr17:45973660-45975750 chr17:46048520-46048720 chr17:46048770-46050880 chr17:46114290-46114520 chr17:46125820-46127970 chr17:46103840-46105830 chr17:45776140-45776680 chr17:45888040-45888130 chr17:45925850-45928280 chr17:45720730-45722200 chr17:45917740-45918030 chr17:46023770-46023970 chr17:46190020-46190660 chr17:46055410-46056190 chr17:46188130-46189390 chr17:46189450-46189930 chr17:45917010-45917550 chr17:45981620-45982080 chr17:46176550-46178110 chr17:46128990-46131430 chr17:46132080-46133740 chr17:46269040-46270410 chr17:45897460-45897560 chr17:46041180-46042890 chr17:46053380-46054070 chr17:46152460-46152650 chr17:45820130-45820430 chr17:46212380-46212970 chr17:46190760-46192380 chr17:46239930-46241840 chr17:45888200-45890010 chr17:45897140-45897330 chr17:45681420-45682690 chr17:45696530-45697100 chr17:45697150-45699130 chr17:45728740-45730050 chr17:45741640-45742420 chr17:46113300-46114210 chr17:45949270-45951340 chr17:45982150-45983700 chr17:45992760-45993520 chr17:46011980-46013890 chr17:46064140-46065730 chr17:46072050-46074200 chr17:46030630-46032360 chr17:46133960-46134390 chr17:46134480-46134700 chr17:46134860-46135650 chr17:46621780-46621880 chr17:46679030-46679430 chr17:46681410-46681840 chr17:46687340-46687880 chr17:46677910-46678780 chr17:45050470-45051830 chr17:46922460-46923390 chr17:45568560-45569750 chr17:46002910-46003330 chr17:46437670-46438740 chr17:46445570-46446350 chr17:46461380-46463380 chr17:46203930-46205760 chr17:46141470-46142050 chr17:46143060-46145040 chr17:45913910-45914110 chr17:45916060-45916150 chr17:46105870-46106490 chr17:46233220-46233780 chr17:46216590-46218720 chr17:46320850-46322890 chr17:46341720-46343970 chr17:46409860-46411680 chr17:46573920-46576360 chr17:46577180-46579420 chr17:46681980-46682220 chr17:46058160-46058520 chr17:46582200-46584690 chr17:46052700-46052870 chr17:45783360-45785750 chr17:46323900-46325030 |
|
| Promoter: |
chr17:46045176-46059147 |
ChIP-seq based regulatory details of CDK5RAP3
| Sample ID | Experiment target | Biosample type | Biosample term name | GSM ID | Tissue type | Source |
|---|
Downstream target genes of CDK5RAP3
Upstream regulatory details of CDK5RAP3
Protein-protein interaction of CDK5RAP3
| OFFICIAL_SYMBOL_A | OFFICIAL_SYMBOL_B | EXPERIMENTAL_SYSTEM | PUBMED_ID | ORGANISM_A_ID | ORGANISM_B_ID | SOURCE |
|---|---|---|---|---|---|---|
| CDK5RAP3 | UFM1 | Affinity Capture-MS | 17353931 | 9606 | 9606 | BIOGRID |
| CDK5RAP3 | UFC1 | Affinity Capture-MS | 17353931 | 9606 | 9606 | BIOGRID |
| CDK5RAP3 | DDRGK1 | Affinity Capture-MS | 17353931 | 9606 | 9606 | BIOGRID |
| CDK5RAP3 | IGKC | Affinity Capture-MS | 17353931 | 9606 | 9606 | BIOGRID |
| CDK5RAP3 | IGHA1 | Affinity Capture-MS | 17353931 | 9606 | 9606 | BIOGRID |
| CDK5RAP3 | UFL1 | Affinity Capture-MS | 17353931 | 9606 | 9606 | BIOGRID |
| CDK5RAP3 | ARL1 | Affinity Capture-MS | 17353931 | 9606 | 9606 | BIOGRID |
| CDK5RAP3 | CRMP1 | Two-hybrid | 16169070 | 9606 | 9606 | BIOGRID |
| CDK5RAP3 | CDK5R1 | Reconstituted Complex | 10915792 | 9606 | 9606 | BIOGRID |
| CDK5RAP3 | UFL1 | Affinity Capture-MS | 20164180 | 9606 | 9606 | BIOGRID |
| CDK5RAP3 | UFL1 | Reconstituted Complex | 20164180 | 9606 | 9606 | BIOGRID |
| CDK5RAP3 | UFL1 | Affinity Capture-Western | 20164180 | 9606 | 9606 | BIOGRID |
| CDK5RAP3 | LYPD6B | Affinity Capture-MS | 20164180 | 9606 | 9606 | BIOGRID |
| CDK5RAP3 | HSPA4 | Affinity Capture-MS | 20164180 | 9606 | 9606 | BIOGRID |
| CDK5RAP3 | UBC | Affinity Capture-MS | 20164180 | 9606 | 9606 | BIOGRID |
| CDK5RAP3 | UFC1 | Affinity Capture-MS | 20164180 | 9606 | 9606 | BIOGRID |
| CDK5RAP3 | HSPA8 | Affinity Capture-MS | 20164180 | 9606 | 9606 | BIOGRID |
| CDK5RAP3 | HUWE1 | Affinity Capture-MS | 20164180 | 9606 | 9606 | BIOGRID |
| CDK5RAP3 | RPL10A | Affinity Capture-MS | 20164180 | 9606 | 9606 | BIOGRID |
| CDK5RAP3 | TMEM55A | Affinity Capture-MS | 20164180 | 9606 | 9606 | BIOGRID |
| CDK5RAP3 | NPM1 | Affinity Capture-MS | 20164180 | 9606 | 9606 | BIOGRID |
| CDK5RAP3 | RPS3 | Affinity Capture-MS | 20164180 | 9606 | 9606 | BIOGRID |
| CDK5RAP3 | CDH4 | Affinity Capture-MS | 20228063 | 9606 | 9606 | BIOGRID |
| CDK5RAP3 | DDRGK1 | Affinity Capture-MS | 20228063 | 9606 | 9606 | BIOGRID |
| CDK5RAP3 | HSPA4 | Affinity Capture-MS | 20228063 | 9606 | 9606 | BIOGRID |
| CDK5RAP3 | CDH4 | Affinity Capture-Western | 20228063 | 9606 | 9606 | BIOGRID |
| CDK5RAP3 | DDRGK1 | Affinity Capture-Western | 20228063 | 9606 | 9606 | BIOGRID |
| CDK5RAP3 | CDH4 | Co-fractionation | 20228063 | 9606 | 9606 | BIOGRID |
| CDK5RAP3 | CDKN2A | Affinity Capture-Western | 16173922 | 9606 | 9606 | BIOGRID |
| CDK5RAP3 | MDM2 | Affinity Capture-Western | 16173922 | 9606 | 9606 | BIOGRID |
| CDK5RAP3 | CDKN2A | Affinity Capture-Western | 23028987 | 9606 | 9606 | BIOGRID |
| CDK5RAP3 | TUBG1 | Affinity Capture-Western | 21465471 | 9606 | 9606 | BIOGRID |
| CDK5RAP3 | TAB1 | Two-hybrid | 21988832 | 9606 | 9606 | BIOGRID |
| CDK5RAP3 | KPNA2 | Two-hybrid | 21988832 | 9606 | 9606 | BIOGRID |
| CDK5RAP3 | DGCR14 | Two-hybrid | 21988832 | 9606 | 9606 | BIOGRID |
| CDK5RAP3 | UFL1 | Affinity Capture-MS | 28514442 | 9606 | 9606 | BIOGRID |
| CDK5RAP3 | TMED4 | Affinity Capture-MS | 28514442 | 9606 | 9606 | BIOGRID |
| CDK5RAP3 | PLD2 | Affinity Capture-MS | 28514442 | 9606 | 9606 | BIOGRID |
| CDK5RAP3 | TMED1 | Affinity Capture-MS | 28514442 | 9606 | 9606 | BIOGRID |
| CDK5RAP3 | TMED9 | Affinity Capture-MS | 28514442 | 9606 | 9606 | BIOGRID |
| CDK5RAP3 | TMEM55A | Affinity Capture-MS | 28514442 | 9606 | 9606 | BIOGRID |
| CDK5RAP3 | PPM1D | Affinity Capture-Western | 28027003 | 9606 | 9606 | BIOGRID |
| CDK5RAP3 | MDM2 | Affinity Capture-Western | 28027003 | 9606 | 9606 | BIOGRID |
| CDK5RAP3 | CDKN2A | Affinity Capture-Western | 28027003 | 9606 | 9606 | BIOGRID |
| CDK5RAP3 | ELAVL1 | Affinity Capture-Western | 28027003 | 9606 | 9606 | BIOGRID |
| CDK5RAP3 | TSPYL4 | Two-hybrid | 32296183 | 9606 | 9606 | BIOGRID |
Annotation of CDK5RAP3
TCGA cancer survival map of CDK5RAP3
Expression of CDK5RAP3
Disease information of CDK5RAP3