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TcoF gene set enrichment
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TcoF Overview
ChIP-seq based regulatory details
Downstream target genes
Upstream regulatory details
PPI
Annotation
TCGA cancer survival map
Expression
Disease information
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Browse TcoF of biosample
TcoF overview
TcoF:
CDY2B
GeneID:
203611
Name:
Testis-specific chromodomain protein Y 2
Ensembl:
ENSG00000129873
Species:
Human
Class:
NA
Family:
Chromodomain Y
Disease:
0
Go term:
2
Pathway:
--
Hallmark:
--
Super Enhancer:
--
Hg19
Hg38
Enhancer:
--
Hg19
Hg38
Promoter:
chrY:19989290-19992100
Source
All
GeneMapper
BETA
ARACNe
GENIE3
Curated
Weight
3
4
5
ChIP-seq based regulatory details of CDY2B
Sample ID
Experiment target
Biosample type
Biosample term name
GSM ID
Tissue type
Source
Downstream target genes of CDY2B
Upstream regulatory details of CDY2B
Promoter
Enhancer
Super Enhancer
MicroRNA
eQTL
TFBS
Common SNP
Risk SNP
AFR
EAS
AMR
SAS
EUR
DHS
450K
WGBS
Interation
eQTL
TFBS
Common SNP
Risk SNP
AFR
EAS
AMR
SAS
EUR
DHS
450K
WGBS
Interation
eQTL
TFBS
Common SNP
Risk SNP
AFR
EAS
AMR
SAS
EUR
DHS
450K
WGBS
Interation
Protein-protein interaction of CDY2B
OFFICIAL_SYMBOL_A
OFFICIAL_SYMBOL_B
EXPERIMENTAL_SYSTEM
PUBMED_ID
ORGANISM_A_ID
ORGANISM_B_ID
SOURCE
Annotation of CDY2B
Pathway
GoTerm
Hallmark
TCGA cancer survival map of CDY2B
Survival
BoxPlot
Survival Map
Cancer
ACC
BLCA
BRCA
CESC
CHOL
COAD
DLBC
ESCA
GBM
HNSC
KICH
KIRC
KIRP
LAML
LGG
LIHC
LUAD
LUSC
LUSC
MESO
OV
PAAD
PCPG
PRAD
PEAD
SARC
SKCM
STAD
TGCT
THCA
THYM
UCEC
UCS
All
Methods
Overall Survival
Disease Free Survival (RFS)
Group Cutoff
Median
Quartile
Custom
Cutoff-High(%)
Cutoff-Low(%)
Hazards Ratio (HR)
Yes
No
Calculate the hazards ratio based on Cox PH Model.
95% Confidence Interval
Yes
No
Add the 95% CI as dotted line.
Axis Units
Months
Days
plot
Datasets Selection
ACC
BLCA
BRCA
CESC
CHOL
COAD
DLBC
ESCA
GBM
HNSC
KICH
KIRC
KIRP
LAML
LGG
LIHC
LUAD
LUSC
OV
PAAD
PCPG
PRAD
READ
SARC
SKCM
STAD
TGCT
THCA
THYM
UCEC
UCS
Reset
Add
Datasets
ACC
The plot axis-x order will follow the list.
Matched Normal data:
Match TCGA normal and GTEx data
Match TCGA normal data
|Log2FC| Cutoff:
p-value Cutoff:
Jitter Size
Calculate the hazards ratio based on Cox PH Model.
Log Scale
Yes
No
We use log2(TPM + 1) for log-scale.
plot
Dataset
(Cancer name)
All
Add
ACC
BLCA
BRCA
CESC
CHOL
COAD
DLBC
ESCA
GBM
HNSC
KICH
KIRC
KIRP
LAML
LGG
LIHC
LUAD
LUSC
MESO
OV
PAAD
PCPG
PRAD
READ
SARC
SKCM
STAD
TGCT
THCA
THYM
UCEC
UCS
UVM
Reset
Tissue Order
ACC BLCA BRCA CESC CHOL COAD DLBC ESCA GBM HNSC KICH KIRC KIRP LAML LGG LIHC LUAD LUSC MESO OV PAAD PCPG PRAD READ SARC SKCM STAD TGCT THCA THYM UCEC UCS UVM
The plot is based on the datasets of list.
Methods
Overall Survival
Disease Free Survival (RFS)
Group Cutoff
Median
Quartile
Custom
Cutoff-High(%)
Cutoff-Low(%)
Significance Level
plot
Expression of  CDY2B
Human Cancers        (TCGA)
Cell Line  (CCLE)
Normal Tissues        (GTEx)
Cell Line (ENCODE)
Primary cell  (ENCODE)
In Vitro differentated cell     (ENCODE)
Disease information of  CDY2B
Disgenet
    Gad