TcoF overview
| TcoF: | CHD1 | |
| GeneID: | 57680 | |
| Name: | Chromodomain-helicase-DNA-binding protein 1 | |
| Ensembl: | ENSG00000153922 | |
| Species: | Human | |
| Class: | NA | |
| Family: | CHD | |
| Disease: | 3 | |
| Go term: | 11 | |
| Pathway: | -- | |
| Hallmark: | -- | |
| Super Enhancer: |
chr5:98263907-98265430 chr5:98262269-98266500 chr5:98262332-98271706 chr5:98262748-98278299 chr5:98262848-98275268 chr5:98263392-98266081 chr5:98262254-98277002 chr5:98262462-98266395 chr5:98262875-98266079 chr5:98262533-98266545 chr5:98262628-98270379 chr5:98262937-98277883 chr5:98263424-98266046 chr5:98262547-98266313 chr5:98262376-98266316 chr5:98262355-98270362 chr5:98262321-98266664 chr5:98262627-98269926 chr5:98262572-98270043 chr5:98262492-98278495 chr5:98262389-98270756 chr5:98262332-98279467 chr5:98262315-98278334 chr5:98262486-98278463 chr5:98262469-98266503 chr5:98262863-98273559 chr5:98262296-98271075 chr5:98262502-98278712 chr5:98262796-98275166 chr5:98262562-98278505 chr5:98262682-98270105 chr5:98262743-98279370 chr5:98249366-98273246 chr5:98241923-98269977 chr5:98244733-98275198 chr5:98246867-98279808 chr5:98241176-98274823 chr5:98255531-98266139 chr5:98254356-98269948 chr5:98198881-98274858 chr5:98240548-98269837 chr5:98256150-98270046 |
|
| Enhancer: |
chr5:98329150-98330150 chr5:98077840-98078560 chr5:98504880-98505660 chr5:97966640-97968330 chr5:98115790-98116720 chr5:97803290-97804810 chr5:97817940-97819500 chr5:98361890-98363610 chr5:98372770-98374610 chr5:98214360-98215050 chr5:98274190-98275230 chr5:98276080-98276820 chr5:98276940-98277820 chr5:97837960-97839740 chr5:97939610-97942100 chr5:97844460-97846860 chr5:97991900-97992760 chr5:98247020-98247470 chr5:98249000-98249250 chr5:98253280-98253580 |
|
| Promoter: |
chr5:98189689-98264661 |
ChIP-seq based regulatory details of CHD1
| Sample ID | Experiment target | Biosample type | Biosample term name | GSM ID | Tissue type | Source |
|---|---|---|---|---|---|---|
| TcoF_00_40108 | CHD1 | cell line | A-549 | - | Lung | ReMap |
| TcoF_00_40102 | CHD1 | cell line | MCF-7 | - | Breast | ReMap |
| TcoF_00_40107 | CHD1 | cell line | HeLa-S3 | - | Uterus | ReMap |
| TcoF_00_30687 | CHD1 | cell line | hESC H1 | GSM1003444 | Embryo | ChIP-Atlas |
| TcoF_00_40006 | CHD1 | cell line | WA01 | GSM1003444 | None | ReMap |
| TcoF_00_30711 | CHD1 | cell line | K-562 | GSM1003575 | Bone Marrow | ChIP-Atlas |
| TcoF_00_40003 | CHD1 | cell line | K-562 | GSM1003575 | Bone Marrow | ReMap |
| TcoF_00_30685 | CHD1 | cell line | IMR-90 | GSM1003623 | Lung | ChIP-Atlas |
| TcoF_00_40061 | CHD1 | cell line | IMR-90 | GSM1003623 | Lung | ReMap |
| TcoF_00_31280 | CHD1 | cell line | LNCAP | GSM1573653 | Prostate | ChIP-Atlas |
| TcoF_00_40293 | CHD1 | cell line | LNCaP_DHT | GSM1573653 | Prostate | ReMap |
| TcoF_00_31281 | CHD1 | cell line | LNCAP | GSM1573654 | Prostate | ChIP-Atlas |
| TcoF_00_40891 | CHD1 | cell line | LNCaP | GSM1573654 | Prostate | ReMap |
| TcoF_00_30506 | CHD1 | cell line | LNCAP | GSM1824834 | Prostate | ChIP-Atlas |
| TcoF_00_30566 | CHD1 | cell line | LNCAP | GSM1868501 | Prostate | ChIP-Atlas |
| TcoF_00_30795 | CHD1 | cell | Mesenchymal stem cells | GSM2359988 | None | ChIP-Atlas |
| TcoF_00_41063 | CHD1 | cell line | hMSC-TERT | GSM2359988 | None | ReMap |
| TcoF_00_30796 | CHD1 | cell | Mesenchymal stem cells | GSM2359989 | None | ChIP-Atlas |
| TcoF_00_40320 | CHD1 | cell line | hMSC-TERT_adipocyte | GSM2359989 | None | ReMap |
| TcoF_00_30797 | CHD1 | cell | Mesenchymal stem cells | GSM2359990 | None | ChIP-Atlas |
| TcoF_00_40321 | CHD1 | cell line | hMSC-TERT_osteoblast | GSM2359990 | None | ReMap |
| TcoF_00_30798 | CHD1 | cell line | Osteoblasts | GSM2359991 | Bone | ChIP-Atlas |
| TcoF_00_30539 | CHD1 | cell line | K-562 | GSM830988 | Bone Marrow | ChIP-Atlas |
| TcoF_00_30540 | CHD1 | cell line | K-562 | GSM830989 | Bone Marrow | ChIP-Atlas |
| TcoF_00_30550 | CHD1 | cell line | hESC H1 | GSM831025 | Embryo | ChIP-Atlas |
| TcoF_00_30551 | CHD1 | cell line | hESC H1 | GSM831026 | Embryo | ChIP-Atlas |
| TcoF_00_30605 | CHD1 | cell line | hESC H1 | GSM935296 | Embryo | ChIP-Atlas |
| TcoF_00_40051 | CHD1 | cell line | WA01 | GSM935296 | None | ReMap |
| TcoF_00_30606 | CHD1 | cell line | GM12878 | GSM935301 | Blood | ChIP-Atlas |
| TcoF_00_40047 | CHD1 | cell line | GM12878 | GSM935301 | Blood | ReMap |
Downstream target genes of CHD1
Upstream regulatory details of CHD1
Protein-protein interaction of CHD1
| OFFICIAL_SYMBOL_A | OFFICIAL_SYMBOL_B | EXPERIMENTAL_SYSTEM | PUBMED_ID | ORGANISM_A_ID | ORGANISM_B_ID | SOURCE |
|---|---|---|---|---|---|---|
| CHD1 | BCLAF1 | Two-hybrid | 12890497 | 9606 | 9606 | BIOGRID |
| CHD1 | SRSF3 | Two-hybrid | 12890497 | 9606 | 9606 | BIOGRID |
| CHD1 | NCOR1 | Two-hybrid | 12890497 | 9606 | 9606 | BIOGRID |
| CHD1 | SAFB | Two-hybrid | 12890497 | 9606 | 9606 | BIOGRID |
| CHD1 | SSRP1 | Co-purification | 10199952 | 9606 | 9606 | BIOGRID |
| CHD1 | HIST1H3A | Co-crystal Structure | 16372014 | 9606 | 9606 | BIOGRID |
| CHD1 | PAF1 | Affinity Capture-Western | 22046413 | 9606 | 9606 | BIOGRID |
| CHD1 | BTRC | Affinity Capture-Western | 28166537 | 9606 | 9606 | BIOGRID |
| CHD1 | CKM | Negative Genetic | 28319085 | 9606 | 9606 | BIOGRID |
| CHD1 | DMPK | Negative Genetic | 28319085 | 9606 | 9606 | BIOGRID |
| CHD1 | TK1 | Negative Genetic | 28319085 | 9606 | 9606 | BIOGRID |
| CHD1 | PIK3CG | Negative Genetic | 28319085 | 9606 | 9606 | BIOGRID |
| CHD1 | PTK6 | Negative Genetic | 28319085 | 9606 | 9606 | BIOGRID |
| CHD1 | PIM2 | Negative Genetic | 28319085 | 9606 | 9606 | BIOGRID |
| CHD1 | POMC | Negative Genetic | 28319085 | 9606 | 9606 | BIOGRID |
| CHD1 | MASP2 | Positive Genetic | 28319085 | 9606 | 9606 | BIOGRID |
| CHD1 | EDA | Positive Genetic | 28319085 | 9606 | 9606 | BIOGRID |
| CHD1 | PRSS8 | Positive Genetic | 28319085 | 9606 | 9606 | BIOGRID |
| CHD1 | PRKDC | Positive Genetic | 28319085 | 9606 | 9606 | BIOGRID |
Annotation of CHD1
TCGA cancer survival map of CHD1
Expression of CHD1
Disease information of CHD1