TcoF overview
| TcoF: | CHD8 | |
| GeneID: | 1387 | |
| Name: | Chromodomain-helicase-DNA-binding protein 8 | |
| Ensembl: | ENSG00000100888 | |
| Species: | Human | |
| Class: | NA | |
| Family: | CHD | |
| Disease: | 8 | |
| Go term: | 29 | |
| Pathway: | 3 | |
| Hallmark: | 2 | |
| Super Enhancer: |
-- |
|
| Enhancer: |
chr14:21976940-21979260 chr14:21572170-21572670 chr14:21904870-21905350 chr14:21875190-21876470 chr14:21993790-21994190 chr14:21954300-21955600 chr14:21538560-21538980 chr14:21553080-21553840 chr14:21769400-21769820 chr14:21787080-21788170 chr14:21788340-21789410 chr14:21811390-21812040 chr14:21820980-21821640 chr14:21774700-21775880 chr14:21874020-21875010 chr14:22065360-22067290 chr14:22070210-22072030 chr14:21559700-21560020 chr14:21561830-21562100 chr14:21735350-21737450 chr14:21776000-21778330 chr14:21849780-21852020 chr14:21894400-21895160 chr14:21872980-21873360 chr14:21555260-21555470 chr14:21555620-21556120 chr14:21556260-21556980 chr14:22003520-22004980 chr14:21881280-21882450 chr14:21882580-21883090 chr14:21729170-21731460 chr14:22120200-22121000 chr14:22043900-22044680 chr14:22109250-22109740 chr14:21552210-21552910 chr14:21680080-21681110 chr14:21698520-21699110 chr14:21769880-21770640 chr14:21770740-21771480 chr14:21531320-21532000 chr14:21683540-21684900 chr14:21685490-21687380 chr14:21687800-21688720 chr14:21934820-21936510 chr14:21510600-21511110 chr14:21512390-21513480 chr14:21515670-21516500 chr14:21713690-21714700 chr14:21767690-21769120 chr14:21873620-21873870 chr14:21891890-21892660 chr14:21835850-21836420 chr14:21601740-21602480 chr14:22171350-22173410 chr14:21972940-21974170 chr14:21963550-21963910 |
|
| Promoter: |
chr14:21853353-21924285 |
ChIP-seq based regulatory details of CHD8
| Sample ID | Experiment target | Biosample type | Biosample term name | GSM ID | Tissue type | Source |
|---|---|---|---|---|---|---|
| TcoF_00_31197 | CHD8 | cell line | Neural Stem Cells | GSM1381222 | Neural | ChIP-Atlas |
| TcoF_00_40819 | CHD8 | cell line | HNSC | GSM1381222 | Neural | ReMap |
| TcoF_00_31198 | CHD8 | cell line | Neural Stem Cells | GSM1381223 | Neural | ChIP-Atlas |
| TcoF_00_31267 | CHD8 | cell line | T-47D | GSM1526889 | Breast | ChIP-Atlas |
| TcoF_00_40286 | CHD8 | cell line | T-47D | GSM1526889 | Breast | ReMap |
| TcoF_00_31268 | CHD8 | cell line | T-47D | GSM1526890 | Breast | ChIP-Atlas |
| TcoF_00_40290 | CHD8 | cell line | T-47D_R5020_5 | GSM1526890 | Breast | ReMap |
| TcoF_00_31269 | CHD8 | cell line | T-47D | GSM1526891 | Breast | ChIP-Atlas |
| TcoF_00_40288 | CHD8 | cell line | T-47D_ETOH_5 | GSM1526891 | Breast | ReMap |
| TcoF_00_31270 | CHD8 | cell line | T-47D | GSM1526892 | Breast | ChIP-Atlas |
| TcoF_00_40289 | CHD8 | cell line | T-47D_R5020_45 | GSM1526892 | Breast | ReMap |
| TcoF_00_31271 | CHD8 | cell line | T-47D | GSM1526893 | Breast | ChIP-Atlas |
| TcoF_00_40287 | CHD8 | cell line | T-47D_ETOH_45 | GSM1526893 | Breast | ReMap |
Downstream target genes of CHD8
Upstream regulatory details of CHD8
Protein-protein interaction of CHD8
| OFFICIAL_SYMBOL_A | OFFICIAL_SYMBOL_B | EXPERIMENTAL_SYSTEM | PUBMED_ID | ORGANISM_A_ID | ORGANISM_B_ID | SOURCE |
|---|---|---|---|---|---|---|
| CHD8 | CTCF | Affinity Capture-Western | 16949368 | 9606 | 9606 | BIOGRID |
| CHD8 | ZNF143 | Affinity Capture-Western | 17938208 | 9606 | 9606 | BIOGRID |
| CHD8 | CTDP1 | Affinity Capture-Western | 19255092 | 9606 | 9606 | BIOGRID |
| CHD8 | TP53 | Affinity Capture-Western | 19151705 | 9606 | 9606 | BIOGRID |
| CHD8 | WDR5 | Reconstituted Complex | 20085832 | 9606 | 9606 | BIOGRID |
| CHD8 | ASH2L | Reconstituted Complex | 20085832 | 9606 | 9606 | BIOGRID |
| CHD8 | RBBP5 | Reconstituted Complex | 20085832 | 9606 | 9606 | BIOGRID |
| CHD8 | CTNNB1 | Affinity Capture-Western | 22083958 | 9606 | 9606 | BIOGRID |
| CHD8 | AR | Affinity Capture-Western | 20308527 | 9606 | 9606 | BIOGRID |
| CHD8 | AR | Reconstituted Complex | 20308527 | 9606 | 9606 | BIOGRID |
| CHD8 | CHD7 | Affinity Capture-Western | 20453063 | 9606 | 9606 | BIOGRID |
| CHD8 | RCHY1 | Two-hybrid | 21988832 | 9606 | 9606 | BIOGRID |
| CHD8 | CDC27 | Affinity Capture-MS | 26496610 | 9606 | 9606 | BIOGRID |
| CHD8 | KPNA1 | Affinity Capture-MS | 26496610 | 9606 | 9606 | BIOGRID |
| CHD8 | UHRF1BP1L | Affinity Capture-MS | 26496610 | 9606 | 9606 | BIOGRID |
| CHD8 | KPNA6 | Affinity Capture-MS | 26496610 | 9606 | 9606 | BIOGRID |
| CHD8 | ALDH1L2 | Affinity Capture-MS | 26496610 | 9606 | 9606 | BIOGRID |
| CHD8 | ZNF707 | Affinity Capture-MS | 26496610 | 9606 | 9606 | BIOGRID |
| CHD8 | ASH2L | Affinity Capture-Western | 24705355 | 9606 | 9606 | BIOGRID |
| CHD8 | RBBP5 | Affinity Capture-Western | 24705355 | 9606 | 9606 | BIOGRID |
| CHD8 | CHD7 | Affinity Capture-Western | 24705355 | 9606 | 9606 | BIOGRID |
| CHD8 | WDR5 | Two-hybrid | 24705355 | 9606 | 9606 | BIOGRID |
| CHD8 | ASH2L | Two-hybrid | 24705355 | 9606 | 9606 | BIOGRID |
| CHD8 | RBBP5 | Two-hybrid | 24705355 | 9606 | 9606 | BIOGRID |
| CHD8 | CHD7 | Two-hybrid | 24705355 | 9606 | 9606 | BIOGRID |
| CHD8 | BRD4 | Affinity Capture-Western | 26626481 | 9606 | 9606 | BIOGRID |
| CHD8 | WHSC1L1 | Affinity Capture-Western | 26626481 | 9606 | 9606 | BIOGRID |
| CHD8 | MAFG | Affinity Capture-Western | 25219500 | 9606 | 9606 | BIOGRID |
| CHD8 | BACH1 | Affinity Capture-Western | 25219500 | 9606 | 9606 | BIOGRID |
| CHD8 | DNMT3B | Affinity Capture-Western | 25219500 | 9606 | 9606 | BIOGRID |
| CHD8 | PLRG1 | Affinity Capture-MS | 26949739 | 9606 | 9606 | BIOGRID |
| CHD8 | ZC3H13 | Affinity Capture-MS | 26949739 | 9606 | 9606 | BIOGRID |
| CHD8 | PPIG | Affinity Capture-MS | 26949739 | 9606 | 9606 | BIOGRID |
| CHD8 | DKC1 | Affinity Capture-MS | 26949739 | 9606 | 9606 | BIOGRID |
| CHD8 | ACOT7 | Affinity Capture-MS | 26949739 | 9606 | 9606 | BIOGRID |
| CHD8 | TAF9B | Affinity Capture-MS | 26949739 | 9606 | 9606 | BIOGRID |
Annotation of CHD8
TCGA cancer survival map of CHD8
Expression of CHD8
Disease information of CHD8