TcoF overview
| TcoF: | CIITA | |
| GeneID: | 30827 | |
| Name: | MHC class II transactivator | |
| Ensembl: | ENSG00000179583 | |
| Species: | Human | |
| Class: | NA | |
| Family: | Others | |
| Disease: | 8 | |
| Go term: | 24 | |
| Pathway: | 4 | |
| Hallmark: | 1 | |
| Super Enhancer: |
chr16:10899393-10942694 chr16:10895423-10938163 chr16:10959829-10979867 chr16:10961136-10992208 chr16:10968099-10998108 chr16:10961552-11013007 chr16:10945641-11013073 chr16:10961678-10991356 chr16:10961688-10991535 chr16:10961241-11012375 chr16:10956321-10974530 chr16:10959539-10991651 chr16:10921020-10992819 chr16:10959762-10992349 chr16:10961110-10991949 chr16:10960622-11012949 chr16:10960442-10991892 chr16:10961931-10991603 chr16:10954833-10974793 chr16:10958001-11010891 chr16:10959859-10991362 chr16:10958050-11010658 chr16:10959889-10985237 chr16:10960000-10986037 chr16:10961790-10986484 chr16:10960910-10983395 chr16:10964054-10973902 chr16:10955266-10974953 chr16:10961711-11035706 chr16:10961909-11035789 chr16:10958600-11033895 |
|
| Enhancer: |
chr16:11065090-11066780 chr16:10837740-10837820 chr16:10989290-10989520 chr16:11009510-11010220 chr16:11045730-11046230 chr16:11149650-11150900 chr16:11150940-11151420 chr16:11152300-11154750 chr16:11177190-11179660 chr16:11016350-11017080 chr16:11017180-11017730 chr16:11071750-11073180 chr16:11133730-11136110 chr16:10774820-10775840 chr16:11010320-11012290 chr16:10837920-10840280 chr16:10846540-10848660 chr16:10858380-10860530 chr16:10936450-10937860 chr16:10981770-10982830 chr16:10984450-10985090 chr16:10985190-10985910 chr16:11018840-11019280 chr16:11118780-11120420 chr16:11145500-11147890 chr16:11169600-11171070 chr16:11186810-11189260 chr16:11265670-11267360 chr16:11268620-11270680 chr16:11302000-11304080 chr16:10646220-10647890 chr16:10905980-10906900 chr16:11116850-11118670 chr16:11192080-11193020 chr16:11193280-11195590 chr16:11053980-11056310 chr16:11085070-11087560 chr16:11128220-11129220 chr16:11160120-11160810 chr16:11101790-11102850 chr16:11104110-11106220 chr16:11108490-11109870 chr16:11110000-11111960 chr16:11125060-11125340 chr16:11125660-11128130 chr16:10986820-10989130 chr16:10976680-10977810 chr16:11070220-11071080 chr16:11138730-11141140 chr16:11016110-11016260 chr16:10650690-10651160 chr16:10660500-10662170 chr16:10662360-10664480 chr16:10665210-10665880 |
|
| Promoter: |
chr16:10960079-11036878 |
ChIP-seq based regulatory details of CIITA
| Sample ID | Experiment target | Biosample type | Biosample term name | GSM ID | Tissue type | Source |
|---|---|---|---|---|---|---|
| TcoF_00_31291 | CIITA | cell line | RAJI | GSM1602232 | Blood | ChIP-Atlas |
| TcoF_00_40793 | CIITA | cell line | Raji_AB1 | GSM1602232 | Blood | ReMap |
| TcoF_00_31292 | CIITA | cell line | RAJI | GSM1602233 | Blood | ChIP-Atlas |
| TcoF_00_31293 | CIITA | cell line | RAJI | GSM1602234 | Blood | ChIP-Atlas |
| TcoF_00_31294 | CIITA | cell line | RAJI | GSM1602235 | Blood | ChIP-Atlas |
| TcoF_00_31295 | CIITA | cell line | RAJI | GSM1602236 | Blood | ChIP-Atlas |
Downstream target genes of CIITA
Upstream regulatory details of CIITA
Protein-protein interaction of CIITA
| OFFICIAL_SYMBOL_A | OFFICIAL_SYMBOL_B | EXPERIMENTAL_SYSTEM | PUBMED_ID | ORGANISM_A_ID | ORGANISM_B_ID | SOURCE |
|---|---|---|---|---|---|---|
| CIITA | NCOA1 | Affinity Capture-Western | 12933903 | 9606 | 9606 | BIOGRID |
| CIITA | NCOA1 | Reconstituted Complex | 12933903 | 9606 | 9606 | BIOGRID |
| CIITA | RFX5 | Affinity Capture-Western | 11003667 | 9606 | 9606 | BIOGRID |
| CIITA | RFXANK | Affinity Capture-Western | 11003667 | 9606 | 9606 | BIOGRID |
| CIITA | MAPK3 | Affinity Capture-Western | 18245089 | 9606 | 9606 | BIOGRID |
| CIITA | MAPK1 | Affinity Capture-Western | 18245089 | 9606 | 9606 | BIOGRID |
| CIITA | HDAC2 | Affinity Capture-Western | 19041327 | 9606 | 9606 | BIOGRID |
| CIITA | SMARCA4 | Reconstituted Complex | 12077331 | 9606 | 9606 | BIOGRID |
| CIITA | HDAC4 | Affinity Capture-Western | 15964851 | 9606 | 9606 | BIOGRID |
| CIITA | HDAC2 | Affinity Capture-Western | 17991736 | 9606 | 9606 | BIOGRID |
| CIITA | SIN3B | Affinity Capture-Western | 17991736 | 9606 | 9606 | BIOGRID |
| CIITA | GTF2B | Reconstituted Complex | 9177216 | 9606 | 9606 | BIOGRID |
| CIITA | TAF9 | Reconstituted Complex | 9177216 | 9606 | 9606 | BIOGRID |
| CIITA | PSMC5 | Affinity Capture-Western | 18215421 | 9606 | 9606 | BIOGRID |
| CIITA | PPARG | Affinity Capture-Western | 17611194 | 9606 | 9606 | BIOGRID |
| CIITA | EP300 | Affinity Capture-Western | 26871568 | 9606 | 9606 | BIOGRID |
| CIITA | EP400 | Affinity Capture-Western | 26871568 | 9606 | 9606 | BIOGRID |
| CIITA | TBP | Affinity Capture-Western | 26871568 | 9606 | 9606 | BIOGRID |
| CIITA | RFX5 | Affinity Capture-Western | 26871568 | 9606 | 9606 | BIOGRID |
| CIITA | PSMC5 | Affinity Capture-Western | 26871568 | 9606 | 9606 | BIOGRID |
| CIITA | PML | Co-localization | 28555140 | 9606 | 9606 | BIOGRID |
| CIITA | CCNT1 | Co-localization | 28555140 | 9606 | 9606 | BIOGRID |
Annotation of CIITA
TCGA cancer survival map of CIITA
Expression of CIITA
Disease information of CIITA