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TcoF overview
TcoF: CNOT3
GeneID: 28991
Name: CCR4-NOT transcription complex subunit 3
Ensembl: ENSG00000088038
Species: Human
Class: class 3
Family: CCR4-NOT
Disease: 4
Go term: 15
Pathway: 2
Hallmark: 1
Super Enhancer:

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Enhancer:

chr19:54391800-54392890 chr19:54393000-54393130 chr19:54393270-54393850 chr19:54448330-54450080 chr19:54662200-54663300 chr19:54704760-54705030 chr19:54705150-54705350 chr19:54599420-54600140 chr19:54672410-54672690 chr19:54930480-54932450 chr19:54326780-54327130 chr19:54373090-54373850 chr19:54474680-54475570 chr19:54549200-54551560 chr19:54600450-54601160 chr19:54668480-54669150 chr19:54672020-54672170 chr19:54710330-54711260 chr19:54746400-54746560 chr19:54751710-54753400 chr19:54803750-54803940 chr19:54803970-54804130 chr19:54809270-54810560 chr19:54823640-54823800 chr19:54823890-54824280 chr19:54876090-54876370 chr19:54960490-54962470 chr19:54962560-54963260 chr19:54850170-54850330 chr19:54675870-54676730 chr19:54671820-54671890 chr19:54406410-54407880 chr19:54660760-54662010 chr19:54682660-54684480 chr19:54982910-54984210 chr19:54650390-54651880 chr19:54932560-54933360 chr19:54941140-54941720 chr19:54941780-54941990 chr19:54942080-54942270 chr19:54947350-54947510 chr19:54657580-54659040 chr19:54881720-54881860 chr19:54522540-54524280 chr19:54537800-54539620 chr19:54996970-54998170 chr19:55185190-55186670 chr19:55044290-55044950 chr19:54283560-54285920 chr19:54360540-54361820 chr19:54401370-54401690 chr19:54401880-54403480 chr19:54430910-54431430 chr19:55086050-55086190 chr19:55086500-55086720 chr19:55087580-55088930 chr19:55113850-55114800 chr19:55146740-55147000 chr19:55147060-55147940 chr19:55148980-55150180 chr19:55156840-55157950 chr19:55178680-55179080 chr19:55179240-55179320 chr19:54296000-54296850 chr19:54459240-54461280 chr19:54410900-54410990 chr19:54592720-54593400 chr19:54653490-54655960 chr19:54656060-54656160 chr19:54656360-54656600 chr19:54659680-54660500 chr19:54938570-54940480 chr19:54940560-54941050 chr19:54966270-54966540 chr19:54966750-54967140 chr19:54969700-54971940 chr19:54656740-54657450 chr19:54871680-54872520 chr19:55019400-55020240 chr19:55020300-55021730 chr19:54351420-54353420 chr19:54354870-54355560 chr19:54968760-54968920 chr19:54374090-54375780 chr19:54510770-54512430 chr19:54708870-54710140 chr19:54729700-54730080 chr19:55028600-55029110 chr19:54946860-54947000 chr19:54947050-54947260 chr19:54928170-54930300 chr19:54096280-54096920 chr19:54271620-54272880 chr19:54274100-54275140 chr19:54545070-54545160 chr19:54545200-54545420 chr19:54645120-54646440 chr19:54756850-54757500 chr19:54757510-54757880 chr19:54779330-54779800 chr19:54779860-54780100 chr19:54848970-54849200

Promoter:

chr19:54641465-54659419

 ChIP-seq based regulatory details of CNOT3
Sample ID Experiment target Biosample type Biosample term name GSM ID Tissue type Source
TcoF_00_21191 CNOT3 cell line None GSM1617373 Snap-frozen tissue Cistrome
TcoF_00_21190 CNOT3 cell line None GSM1617374 Snap-frozen tissue Cistrome
TcoF_00_20386 CNOT3 cell line HCT-116 GSM1617391 Colon Cistrome
 Downstream target genes of CNOT3
 Upstream regulatory details of CNOT3
 Protein-protein interaction of CNOT3
OFFICIAL_SYMBOL_A OFFICIAL_SYMBOL_B EXPERIMENTAL_SYSTEM PUBMED_ID ORGANISM_A_ID ORGANISM_B_ID SOURCE
CNOT3 CAND2 Reconstituted Complex 12207886 9606 9606 BIOGRID
CNOT3 CNOT8 Two-hybrid 10637334 9606 9606 BIOGRID
CNOT3 RQCD1 Co-fractionation 22939629 9606 9606 BIOGRID
CNOT3 HNRNPLL Co-fractionation 22939629 9606 9606 BIOGRID
CNOT3 ID3 Two-hybrid 18255255 9606 9606 BIOGRID
CNOT3 CNOT1 Co-fractionation 26344197 9606 9606 BIOGRID
CNOT3 CNOT2 Co-fractionation 26344197 9606 9606 BIOGRID
CNOT3 CNOT7 Co-fractionation 26344197 9606 9606 BIOGRID
CNOT3 RQCD1 Co-fractionation 26344197 9606 9606 BIOGRID
CNOT3 KDM1A Negative Genetic 28481362 9606 9606 BIOGRID
CNOT3 EPC1 Negative Genetic 28481362 9606 9606 BIOGRID
CNOT3 DPY30 Negative Genetic 28481362 9606 9606 BIOGRID
CNOT3 MED7 Positive Genetic 28481362 9606 9606 BIOGRID
CNOT3 INTS9 Positive Genetic 28481362 9606 9606 BIOGRID
CNOT3 THOC2 Positive Genetic 28481362 9606 9606 BIOGRID
CNOT3 ELP3 Positive Genetic 28481362 9606 9606 BIOGRID
CNOT3 MCM2 Positive Genetic 28481362 9606 9606 BIOGRID
CNOT3 MED14 Positive Genetic 28481362 9606 9606 BIOGRID
CNOT3 MED15 Positive Genetic 28481362 9606 9606 BIOGRID
CNOT3 TRRAP Positive Genetic 28481362 9606 9606 BIOGRID
CNOT3 PAF1 Positive Genetic 28481362 9606 9606 BIOGRID
CNOT3 RTF1 Positive Genetic 28481362 9606 9606 BIOGRID
CNOT3 CNOT2 Two-hybrid 32296183 9606 9606 BIOGRID
CNOT3 OAT Proximity Label-MS 30021884 9606 9606 BIOGRID
 Annotation of CNOT3
 TCGA cancer survival map of CNOT3


Calculate the hazards ratio based on Cox PH Model.
Add the 95% CI as dotted line.
Reset Add The plot axis-x order will follow the list.


Calculate the hazards ratio based on Cox PH Model.
We use log2(TPM + 1) for log-scale.
All Add
Reset The plot is based on the datasets of list.


 Expression of  CNOT3
 Disease information of  CNOT3