TcoF overview
TcoF: DDX39B
GeneID: 56919
Name: RNA helicase
Ensembl: ENSG00000198563
Species: Human
Class: class HC
Family: RNA helicase
Disease: 0
Go term: 32
Pathway: 3
Hallmark: --
Super Enhancer:

--
Enhancer:

chr6:31697000-31697820 chr6:31744570-31744880 chr6:31763030-31763320 chr6:31773920-31774530 chr6:31804920-31805010 chr6:31829970-31830390 chr6:31431060-31431140 chr6:31543700-31544310 chr6:31695130-31695310 chr6:31736980-31737450 chr6:31737570-31737770 chr6:31920180-31921500 chr6:31544350-31544540 chr6:31544590-31544890 chr6:31558380-31560450 chr6:31695470-31695940 chr6:31239650-31239770 chr6:31526610-31529060 chr6:31744020-31744320 chr6:31657900-31658310 chr6:31658380-31659350 chr6:31742400-31743100 chr6:31844850-31845330 chr6:31555200-31555410 chr6:31555740-31556270 chr6:31555510-31555720 chr6:31546110-31548330 chr6:31805210-31807310 chr6:31760900-31762600 chr6:31132640-31132900 chr6:31133060-31133340 chr6:31171750-31174000 chr6:31237160-31237260 chr6:31237300-31237740 chr6:31238260-31238840 chr6:31239130-31239370 chr6:31317890-31319390 chr6:31319440-31321640 chr6:31322300-31322400 chr6:31322440-31322880 chr6:31371480-31373280 chr6:31466040-31467810 chr6:31496960-31497520 chr6:31882670-31884820 chr6:31756830-31757740 chr6:31499180-31500550 chr6:31500690-31503140 chr6:31591690-31592030 chr6:31592140-31592220 chr6:31592300-31592940 chr6:31593390-31593560 chr6:31594980-31595540 chr6:31602760-31602900 chr6:31603050-31603170 chr6:31603240-31603350 chr6:31604390-31604500 chr6:31607000-31607270 chr6:31607420-31607970 chr6:31914970-31915120 chr6:31915300-31915510 chr6:31915620-31915720 chr6:31604720-31604810 chr6:31657480-31657850 chr6:31731330-31731840 chr6:31740900-31741010 chr6:31743210-31743740 chr6:31835760-31836600 chr6:31907100-31908720 chr6:31916290-31916600 chr6:31916740-31917010 chr6:31917120-31917190 chr6:32050100-32052180 chr6:32082150-32083040 chr6:32085820-32086550 chr6:32086640-32086730 chr6:32086920-32087600 chr6:32095300-32095440 chr6:32095530-32095890 chr6:32157100-32157470 chr6:31498700-31498820 chr6:31610890-31611660 chr6:31666320-31668710 chr6:31713100-31715160 chr6:31733840-31734020 chr6:31734160-31734230 chr6:31759520-31759640 chr6:31895580-31895730 chr6:31919380-31919650 chr6:31949950-31950080 chr6:31950280-31950490 chr6:31974290-31974390 chr6:31974500-31974580 chr6:32007030-32007130 chr6:32007240-32007320 chr6:32007420-32007520 chr6:32007610-32007780 chr6:32084590-32084810 chr6:32137230-32137740 chr6:31004380-31006200 chr6:31165660-31167730 chr6:31483320-31485600 chr6:31696520-31696640 chr6:31715200-31715620 chr6:31878110-31879970 chr6:31061740-31063390 chr6:31093250-31093450 chr6:31112130-31112460 chr6:31112570-31112660 chr6:31112850-31112940 chr6:31169620-31170140 chr6:31213280-31215020 chr6:31605560-31606800 chr6:31696300-31696420 chr6:31760290-31760530 chr6:31760670-31760760 chr6:31841860-31842230 chr6:31843910-31844010 chr6:32049450-32049810 chr6:31577220-31577990 chr6:31625990-31626070 chr6:31656900-31657350 chr6:31659700-31660800 chr6:31694510-31694810 chr6:32028840-32029170 chr6:32047140-32049140 chr6:32135430-32135680 chr6:31653820-31654720 chr6:31525630-31525790 chr6:31720450-31721070 chr6:31875900-31877660 chr6:31914500-31914780 chr6:32074640-32076950 chr6:30615620-30617330 chr6:30639050-30640410 chr6:31605100-31605220 chr6:31730950-31731190 chr6:32134400-32134470 chr6:32134590-32134680 chr6:32135040-32135120 chr6:32135210-32135270 chr6:31529550-31532010 chr6:31875000-31875610 chr6:31590990-31591500 chr6:31557170-31557300 chr6:31741220-31741410 chr6:31433610-31434000 chr6:31625500-31625840 chr6:31735030-31735130 chr6:32065230-32065340 chr6:31721220-31721340 chr6:31917340-31917820

Promoter:

chr6:31497996-31510225

 ChIP-seq based regulatory details of DDX39B
Sample ID Experiment target Biosample type Biosample term name GSM ID Tissue type Source
 Downstream target genes of DDX39B
 Protein-protein interaction of DDX39B
OFFICIAL_SYMBOL_A OFFICIAL_SYMBOL_B EXPERIMENTAL_SYSTEM PUBMED_ID ORGANISM_A_ID ORGANISM_B_ID SOURCE
DDX39B THOC2 Affinity Capture-MS 15998806 9606 9606 BIOGRID
DDX39B THOC5 Affinity Capture-MS 15998806 9606 9606 BIOGRID
DDX39B THOC1 Affinity Capture-MS 15998806 9606 9606 BIOGRID
DDX39B THOC3 Affinity Capture-MS 15998806 9606 9606 BIOGRID
DDX39B THOC6 Affinity Capture-MS 15998806 9606 9606 BIOGRID
DDX39B ALYREF Affinity Capture-MS 15998806 9606 9606 BIOGRID
DDX39B THOC7 Affinity Capture-MS 15998806 9606 9606 BIOGRID
DDX39B THOC2 Co-purification 15998806 9606 9606 BIOGRID
DDX39B THOC5 Co-purification 15998806 9606 9606 BIOGRID
DDX39B THOC1 Co-purification 15998806 9606 9606 BIOGRID
DDX39B THOC3 Co-purification 15998806 9606 9606 BIOGRID
DDX39B THOC6 Co-purification 15998806 9606 9606 BIOGRID
DDX39B THOC7 Co-purification 15998806 9606 9606 BIOGRID
DDX39B ALYREF Co-purification 15998806 9606 9606 BIOGRID
DDX39B NR5A1 Affinity Capture-RNA 17190602 9606 9606 BIOGRID
DDX39B SMAD4 Affinity Capture-RNA 17190602 9606 9606 BIOGRID
DDX39B NCBP1 Affinity Capture-Western 17190602 9606 9606 BIOGRID
DDX39B ALYREF Affinity Capture-Western 17190602 9606 9606 BIOGRID
DDX39B THOC2 Affinity Capture-Western 17190602 9606 9606 BIOGRID
DDX39B THOC5 Affinity Capture-Western 17190602 9606 9606 BIOGRID
DDX39B THOC2 Reconstituted Complex 17190602 9606 9606 BIOGRID
DDX39B THOC5 Reconstituted Complex 17190602 9606 9606 BIOGRID
DDX39B THOC1 Reconstituted Complex 17190602 9606 9606 BIOGRID
DDX39B ALYREF Reconstituted Complex 17190602 9606 9606 BIOGRID
DDX39B THOC3 Reconstituted Complex 17190602 9606 9606 BIOGRID
DDX39B THOC6 Reconstituted Complex 17190602 9606 9606 BIOGRID
DDX39B THOC7 Reconstituted Complex 17190602 9606 9606 BIOGRID
DDX39B NCBP1 Reconstituted Complex 17190602 9606 9606 BIOGRID
DDX39B NCBP2 Reconstituted Complex 17190602 9606 9606 BIOGRID
DDX39B FYTTD1 Affinity Capture-Western 19836239 9606 9606 BIOGRID
DDX39B ALYREF Affinity Capture-Western 21799930 9606 9606 BIOGRID
DDX39B RAE1 Affinity Capture-Western 21799930 9606 9606 BIOGRID
DDX39B WIBG Co-fractionation 22939629 9606 9606 BIOGRID
DDX39B WDR74 Co-fractionation 22939629 9606 9606 BIOGRID
DDX39B VPS33B Co-fractionation 22939629 9606 9606 BIOGRID
DDX39B UBE3A Co-fractionation 22939629 9606 9606 BIOGRID
DDX39B IL7R Protein-RNA 23151878 9606 9606 BIOGRID
DDX39B GSR Co-fractionation 22863883 9606 9606 BIOGRID
DDX39B HSPD1 Co-fractionation 22863883 9606 9606 BIOGRID
DDX39B RBBP4 Co-fractionation 22863883 9606 9606 BIOGRID
DDX39B ALYREF Affinity Capture-Western 23222130 9606 9606 BIOGRID
DDX39B THOC2 Affinity Capture-Western 23222130 9606 9606 BIOGRID
DDX39B THOC3 Affinity Capture-Western 23222130 9606 9606 BIOGRID
DDX39B ALYREF Reconstituted Complex 23222130 9606 9606 BIOGRID
DDX39B NCBP1 Affinity Capture-Western 23222130 9606 9606 BIOGRID
DDX39B LUZP4 Reconstituted Complex 25662211 9606 9606 BIOGRID
DDX39B DDOST Co-fractionation 26344197 9606 9606 BIOGRID
DDX39B ETFA Co-fractionation 26344197 9606 9606 BIOGRID
DDX39B MOB4 Co-fractionation 26344197 9606 9606 BIOGRID
DDX39B PABPC1 Co-fractionation 26344197 9606 9606 BIOGRID
DDX39B PABPC4 Co-fractionation 26344197 9606 9606 BIOGRID
DDX39B RPN1 Co-fractionation 26344197 9606 9606 BIOGRID
DDX39B ABLIM1 Affinity Capture-MS 27684187 9606 9606 BIOGRID
DDX39B MYO1B Affinity Capture-MS 27684187 9606 9606 BIOGRID
DDX39B PAWR Affinity Capture-MS 27684187 9606 9606 BIOGRID
DDX39B MYO6 Affinity Capture-MS 27684187 9606 9606 BIOGRID
DDX39B DLD Affinity Capture-MS 27684187 9606 9606 BIOGRID
DDX39B LRRFIP2 Affinity Capture-MS 27684187 9606 9606 BIOGRID
DDX39B MPRIP Affinity Capture-MS 27684187 9606 9606 BIOGRID
DDX39B ATAD3A Affinity Capture-MS 27684187 9606 9606 BIOGRID
DDX39B MYH10 Affinity Capture-MS 27684187 9606 9606 BIOGRID
DDX39B PRDX1 Affinity Capture-MS 27684187 9606 9606 BIOGRID
DDX39B TMOD3 Affinity Capture-MS 27684187 9606 9606 BIOGRID
DDX39B PPP1R12A Affinity Capture-MS 27684187 9606 9606 BIOGRID
DDX39B MYH14 Affinity Capture-MS 27684187 9606 9606 BIOGRID
DDX39B TUBA4A Affinity Capture-MS 27684187 9606 9606 BIOGRID
DDX39B PHGDH Affinity Capture-MS 27684187 9606 9606 BIOGRID
DDX39B SPECC1L Affinity Capture-MS 27684187 9606 9606 BIOGRID
DDX39B BCLAF1 Affinity Capture-MS 27684187 9606 9606 BIOGRID
DDX39B SPECC1 Affinity Capture-MS 27684187 9606 9606 BIOGRID
DDX39B SVIL Affinity Capture-MS 27684187 9606 9606 BIOGRID
DDX39B LUZP1 Affinity Capture-MS 27684187 9606 9606 BIOGRID
DDX39B RPL12 Affinity Capture-MS 27684187 9606 9606 BIOGRID
DDX39B LMO7 Affinity Capture-MS 27684187 9606 9606 BIOGRID
DDX39B LIMA1 Affinity Capture-MS 27684187 9606 9606 BIOGRID
DDX39B RPS3 Affinity Capture-MS 27684187 9606 9606 BIOGRID
DDX39B ATP5A1 Affinity Capture-MS 27684187 9606 9606 BIOGRID
DDX39B MYL6 Affinity Capture-MS 27684187 9606 9606 BIOGRID
DDX39B CORO1C Affinity Capture-MS 27684187 9606 9606 BIOGRID
DDX39B RAI14 Affinity Capture-MS 27684187 9606 9606 BIOGRID
DDX39B TUFM Affinity Capture-MS 27684187 9606 9606 BIOGRID
DDX39B DNAJA2 Affinity Capture-MS 27684187 9606 9606 BIOGRID
DDX39B LMNA Affinity Capture-MS 27684187 9606 9606 BIOGRID
DDX39B MYH9 Affinity Capture-MS 27684187 9606 9606 BIOGRID
DDX39B AP2M1 Affinity Capture-MS 27684187 9606 9606 BIOGRID
DDX39B MYO1C Affinity Capture-MS 27684187 9606 9606 BIOGRID
DDX39B FLII Affinity Capture-MS 27684187 9606 9606 BIOGRID
DDX39B IMPDH2 Affinity Capture-MS 27684187 9606 9606 BIOGRID
DDX39B MYL12B Affinity Capture-MS 27684187 9606 9606 BIOGRID
DDX39B CAPZB Affinity Capture-MS 27684187 9606 9606 BIOGRID
DDX39B SPTBN1 Affinity Capture-MS 27684187 9606 9606 BIOGRID
DDX39B SPTAN1 Affinity Capture-MS 27684187 9606 9606 BIOGRID
DDX39B RPL18 Affinity Capture-MS 27684187 9606 9606 BIOGRID
DDX39B PTBP1 Affinity Capture-MS 27684187 9606 9606 BIOGRID
DDX39B COPE Affinity Capture-MS 27684187 9606 9606 BIOGRID
DDX39B THOC3 Affinity Capture-MS 27684187 9606 9606 BIOGRID
DDX39B CFL1 Affinity Capture-MS 27684187 9606 9606 BIOGRID
DDX39B AP2A1 Affinity Capture-MS 27684187 9606 9606 BIOGRID
DDX39B CRYL1 Affinity Capture-MS 27684187 9606 9606 BIOGRID
DDX39B TUBB Affinity Capture-MS 27684187 9606 9606 BIOGRID
DDX39B SRRM2 Affinity Capture-MS 27684187 9606 9606 BIOGRID
DDX39B HSPA8 Affinity Capture-MS 27684187 9606 9606 BIOGRID
DDX39B SF3B3 Affinity Capture-MS 27684187 9606 9606 BIOGRID
DDX39B BAG2 Affinity Capture-MS 27684187 9606 9606 BIOGRID
DDX39B PNN Affinity Capture-MS 27684187 9606 9606 BIOGRID
DDX39B THRAP3 Affinity Capture-MS 27684187 9606 9606 BIOGRID
DDX39B THOC6 Affinity Capture-MS 27684187 9606 9606 BIOGRID
DDX39B SF3A2 Affinity Capture-MS 27684187 9606 9606 BIOGRID
DDX39B CAD Affinity Capture-MS 27684187 9606 9606 BIOGRID
DDX39B PRPF40A Affinity Capture-MS 27684187 9606 9606 BIOGRID
DDX39B WTAP Affinity Capture-MS 27684187 9606 9606 BIOGRID
DDX39B SNRPB2 Affinity Capture-MS 27684187 9606 9606 BIOGRID
DDX39B SRRT Affinity Capture-MS 27684187 9606 9606 BIOGRID
DDX39B THOC7 Affinity Capture-MS 27684187 9606 9606 BIOGRID
DDX39B SRSF7 Affinity Capture-MS 27684187 9606 9606 BIOGRID
DDX39B RBM17 Affinity Capture-MS 27684187 9606 9606 BIOGRID
DDX39B CHTOP Affinity Capture-MS 27684187 9606 9606 BIOGRID
DDX39B THOC5 Affinity Capture-MS 27684187 9606 9606 BIOGRID
DDX39B H1F0 Affinity Capture-MS 27684187 9606 9606 BIOGRID
DDX39B ACIN1 Affinity Capture-MS 27684187 9606 9606 BIOGRID
DDX39B THOC1 Affinity Capture-MS 27684187 9606 9606 BIOGRID
DDX39B TRA2B Affinity Capture-MS 27684187 9606 9606 BIOGRID
DDX39B RBM25 Affinity Capture-MS 27684187 9606 9606 BIOGRID
DDX39B SRRM1 Affinity Capture-MS 27684187 9606 9606 BIOGRID
DDX39B RBM15 Affinity Capture-MS 27684187 9606 9606 BIOGRID
DDX39B EIF4A3 Affinity Capture-MS 27684187 9606 9606 BIOGRID
DDX39B SF3A1 Affinity Capture-MS 27684187 9606 9606 BIOGRID
DDX39B CD59 Affinity Capture-MS 27684187 9606 9606 BIOGRID
DDX39B CCDC9 Affinity Capture-MS 27684187 9606 9606 BIOGRID
DDX39B LYN Affinity Capture-MS 27684187 9606 9606 BIOGRID
DDX39B CTNNB1 Affinity Capture-MS 27684187 9606 9606 BIOGRID
DDX39B C15orf52 Affinity Capture-MS 27684187 9606 9606 BIOGRID
DDX39B PCBP1 Affinity Capture-MS 27684187 9606 9606 BIOGRID
DDX39B SLC25A5 Affinity Capture-MS 27684187 9606 9606 BIOGRID
DDX39B RALY Affinity Capture-MS 27684187 9606 9606 BIOGRID
DDX39B HNRNPC Affinity Capture-MS 27684187 9606 9606 BIOGRID
DDX39B DYNC1LI2 Affinity Capture-MS 27684187 9606 9606 BIOGRID
DDX39B RPS2 Affinity Capture-MS 27684187 9606 9606 BIOGRID
DDX39B GNG12 Affinity Capture-MS 27684187 9606 9606 BIOGRID
DDX39B DHX15 Affinity Capture-MS 27684187 9606 9606 BIOGRID
DDX39B ERBB2IP Affinity Capture-MS 27684187 9606 9606 BIOGRID
DDX39B FASN Affinity Capture-MS 27684187 9606 9606 BIOGRID
DDX39B GPT2 Affinity Capture-MS 27684187 9606 9606 BIOGRID
DDX39B CALM1 Affinity Capture-MS 27684187 9606 9606 BIOGRID
DDX39B GNAI2 Affinity Capture-MS 27684187 9606 9606 BIOGRID
DDX39B CDH1 Affinity Capture-MS 27684187 9606 9606 BIOGRID
DDX39B GNAI3 Affinity Capture-MS 27684187 9606 9606 BIOGRID
DDX39B CDC5L Affinity Capture-MS 27684187 9606 9606 BIOGRID
DDX39B DDX39B Two-hybrid 32296183 9606 9606 BIOGRID
DDX39B SARNP Two-hybrid 32296183 9606 9606 BIOGRID
DDX39B API5 Proximity Label-MS 30021884 9606 9606 BIOGRID
DDX39B CHTOP Proximity Label-MS 30021884 9606 9606 BIOGRID
DDX39B NEDD4 Affinity Capture-MS 24981860 9606 9606 BIOGRID
DDX39B SUMO2 Affinity Capture-MS 24981860 9606 9606 BIOGRID
DDX39B ANP32B Affinity Capture-MS 24981860 9606 9606 BIOGRID
DDX39B ANXA5 Affinity Capture-MS 24981860 9606 9606 BIOGRID
DDX39B STMN1 Affinity Capture-MS 24981860 9606 9606 BIOGRID
DDX39B PTMS Affinity Capture-MS 24981860 9606 9606 BIOGRID
DDX39B PGK1 Affinity Capture-MS 24981860 9606 9606 BIOGRID
DDX39B CALR Affinity Capture-MS 24981860 9606 9606 BIOGRID
DDX39B MARCKS Affinity Capture-MS 24981860 9606 9606 BIOGRID
DDX39B BASP1 Affinity Capture-MS 24981860 9606 9606 BIOGRID
DDX39B PDIA4 Affinity Capture-MS 24981860 9606 9606 BIOGRID
DDX39B PEBP1 Affinity Capture-MS 24981860 9606 9606 BIOGRID
DDX39B PGAM1 Affinity Capture-MS 24981860 9606 9606 BIOGRID
DDX39B ALDOA Affinity Capture-MS 24981860 9606 9606 BIOGRID
DDX39B PFN1 Affinity Capture-MS 24981860 9606 9606 BIOGRID
DDX39B HSPE1 Affinity Capture-MS 24981860 9606 9606 BIOGRID
DDX39B HSP90B1 Affinity Capture-MS 24981860 9606 9606 BIOGRID
DDX39B TRIM24 Affinity Capture-MS 24981860 9606 9606 BIOGRID
DDX39B PARK7 Affinity Capture-MS 24981860 9606 9606 BIOGRID
DDX39B ORF57 Affinity Capture-Western 18974867 9606 37296 BIOGRID
 Annotation of DDX39B
 TCGA cancer survival map of DDX39B


Calculate the hazards ratio based on Cox PH Model.
Add the 95% CI as dotted line.
Reset Add The plot axis-x order will follow the list.


Calculate the hazards ratio based on Cox PH Model.
We use log2(TPM + 1) for log-scale.
All Add
Reset The plot is based on the datasets of list.


 Disease information of  DDX39B