TcoF overview
TcoF: DNMT1
GeneID: 5977
Name: DNA methyltransferase 1
Ensembl: ENSG00000130816
Species: Human
Class: NA
Family: DNA_methylase
Disease: 60
Go term: 29
Pathway: 13
Hallmark: --
Super Enhancer:

chr19:10293938-10318316 chr19:10240791-10268531

Enhancer:

chr19:10341160-10341870 chr19:10381900-10383910 chr19:10251590-10251780 chr19:10362990-10363070 chr19:10416630-10418860 chr19:10229850-10230520 chr19:10402020-10402160 chr19:10403000-10403280 chr19:10426170-10426380 chr19:10426440-10426520 chr19:10490460-10491050 chr19:10400800-10401740 chr19:10112560-10114240 chr19:10226260-10226350 chr19:10222420-10224300 chr19:9877600-9878960 chr19:9929290-9929400 chr19:9938740-9939000 chr19:9946080-9947490 chr19:10095300-10096510 chr19:10096570-10096990 chr19:10102720-10103500 chr19:10104480-10106230 chr19:10106290-10106740 chr19:10112350-10112440 chr19:10126150-10127730 chr19:10197120-10197600 chr19:10197730-10197920 chr19:10197970-10199200 chr19:10205620-10206650 chr19:10251870-10252700 chr19:10252900-10254440 chr19:10291560-10292710 chr19:10363140-10363220 chr19:10402490-10402710 chr19:10403540-10403670 chr19:10403920-10404370 chr19:10405320-10406020 chr19:10406290-10407010 chr19:10415880-10416060 chr19:10416160-10416520 chr19:10425230-10426060 chr19:10449620-10450210 chr19:10461640-10461720 chr19:10479100-10481100 chr19:10502380-10503760 chr19:10564010-10565500 chr19:10568780-10570070 chr19:10571780-10572200 chr19:10572360-10572550 chr19:10655000-10655380 chr19:10675710-10676390 chr19:10676470-10676580 chr19:10690540-10691940 chr19:10100260-10102280 chr19:10102330-10102460 chr19:10270440-10270510 chr19:10270600-10270690 chr19:10270730-10271050 chr19:10664960-10665760 chr19:10674700-10675600 chr19:10271090-10273290 chr19:10085260-10087230 chr19:10102520-10102670 chr19:10461840-10462340 chr19:10104340-10104420 chr19:10257810-10259550 chr19:10286300-10287960 chr19:10580540-10582170 chr19:10248690-10249110 chr19:10249280-10250350 chr19:10663000-10663560 chr19:10229400-10229540 chr19:10097430-10098490 chr19:10363380-10365260 chr19:10037280-10039260 chr19:10116910-10118920 chr19:10655810-10657260 chr19:9968540-9971040 chr19:10226060-10226150 chr19:10207250-10208820 chr19:10483820-10484840 chr19:10511560-10514050 chr19:9927080-9929220 chr19:9673810-9676060 chr19:9767360-9768680 chr19:9768810-9770050 chr19:9848000-9849250 chr19:9966210-9966960 chr19:10077420-10077980 chr19:10106800-10106880 chr19:10227670-10227750 chr19:10404620-10404710 chr19:10405000-10405070 chr19:10463040-10463100 chr19:10463230-10463600 chr19:10463780-10464200 chr19:10464320-10464710 chr19:10464910-10465180 chr19:10572680-10572900 chr19:10602110-10602250 chr19:10625710-10628070 chr19:10655540-10655630 chr19:10692070-10692160 chr19:10692560-10694040 chr19:10736350-10736920 chr19:10736970-10738390 chr19:10884040-10885930 chr19:10945790-10945930 chr19:10946030-10946270 chr19:11141570-11143960 chr19:10959220-10960930 chr19:9700210-9700840 chr19:9952040-9953180 chr19:10154700-10155480 chr19:10571370-10571670 chr19:10812380-10812620 chr19:10812700-10812790 chr19:10226500-10226640 chr19:10226750-10227470 chr19:10227860-10229340 chr19:10229630-10229760 chr19:10246960-10247760 chr19:10367500-10368890 chr19:10432300-10433320 chr19:10433420-10433820 chr19:10433950-10434050 chr19:10665860-10665960 chr19:10666030-10668220 chr19:10792870-10793210 chr19:10793380-10793800 chr19:10798380-10799220 chr19:10799360-10799850 chr19:9707490-9709200 chr19:10283850-10284540 chr19:10474140-10475010 chr19:10576420-10577560 chr19:10685720-10687870 chr19:10688030-10689560 chr19:10738680-10740160 chr19:10747430-10748310 chr19:10114390-10114710 chr19:10114820-10116230 chr19:10729350-10730300 chr19:9995150-9996660 chr19:9976230-9978540 chr19:10059300-10059820 chr19:10246530-10246740 chr19:10697200-10697860 chr19:10722170-10724640 chr19:10727790-10729200 chr19:10370740-10373200 chr19:10812930-10814300 chr19:10431940-10432200 chr19:10067840-10070230 chr19:10265450-10265580 chr19:10276500-10277270 chr19:10284580-10286210 chr19:10291250-10291450 chr19:10375920-10376320 chr19:10413610-10415470 chr19:10247960-10248500 chr19:10597500-10597640 chr19:10692310-10692420 chr19:10543250-10545480 chr19:10746190-10746990 chr19:10869100-10870410 chr19:10891010-10892380 chr19:10914310-10916590

Promoter:

chr19:10244021-10341962

 ChIP-seq based regulatory details of DNMT1
Sample ID Experiment target Biosample type Biosample term name GSM ID Tissue type Source
TcoF_00_40170 DNMT1 cell line K-562 - Bone Marrow ReMap
TcoF_00_30475 DNMT1 cell line PC-3 GSM1678031 Prostate ChIP-Atlas
TcoF_00_30476 DNMT1 cell line PC-3 GSM1678032 Prostate ChIP-Atlas
TcoF_00_30943 DNMT1 cell line HBEC3-KT GSM2766553 Lung ChIP-Atlas
TcoF_00_30945 DNMT1 cell line HBEC3-KT GSM2766558 Lung ChIP-Atlas
TcoF_00_30947 DNMT1 cell line HBEC3-KT GSM2766563 Lung ChIP-Atlas
TcoF_00_30949 DNMT1 cell line HBEC3-KT GSM2766568 Lung ChIP-Atlas
TcoF_00_30640 DNMT1 cell line NCCIT GSM952455 Embryo ChIP-Atlas
TcoF_00_30642 DNMT1 cell line NCCIT GSM952463 Embryo ChIP-Atlas
 Downstream target genes of DNMT1
 Protein-protein interaction of DNMT1
OFFICIAL_SYMBOL_A OFFICIAL_SYMBOL_B EXPERIMENTAL_SYSTEM PUBMED_ID ORGANISM_A_ID ORGANISM_B_ID SOURCE
DNMT1 DNMT3B Affinity Capture-Western 12867029 9606 9606 BIOGRID
DNMT1 CBX5 Affinity Capture-Western 12867029 9606 9606 BIOGRID
DNMT1 SUV39H1 Affinity Capture-Western 12711675 9606 9606 BIOGRID
DNMT1 CBX1 Reconstituted Complex 12711675 9606 9606 BIOGRID
DNMT1 HDAC2 Two-hybrid 10888872 9606 9606 BIOGRID
DNMT1 DMAP1 Two-hybrid 10888872 9606 9606 BIOGRID
DNMT1 DMAP1 Reconstituted Complex 10888872 9606 9606 BIOGRID
DNMT1 RB1 Co-fractionation 10888886 9606 9606 BIOGRID
DNMT1 E2F1 Co-fractionation 10888886 9606 9606 BIOGRID
DNMT1 HDAC1 Co-fractionation 10888886 9606 9606 BIOGRID
DNMT1 TRIM27 Two-hybrid 16169070 9606 9606 BIOGRID
DNMT1 DNMT3A Affinity Capture-Western 12145218 9606 9606 BIOGRID
DNMT1 DNMT3B Affinity Capture-Western 12145218 9606 9606 BIOGRID
DNMT1 DNMT3A Reconstituted Complex 12145218 9606 9606 BIOGRID
DNMT1 DNMT3B Reconstituted Complex 12145218 9606 9606 BIOGRID
DNMT1 PCNA Reconstituted Complex 12354094 9606 9606 BIOGRID
DNMT1 UHRF1 Affinity Capture-Western 17934516 9606 9606 BIOGRID
DNMT1 HDAC1 Affinity Capture-Western 17934516 9606 9606 BIOGRID
DNMT1 HDAC1 Affinity Capture-Western 12473678 9606 9606 BIOGRID
DNMT1 CXXC1 Affinity Capture-Western 18680430 9606 9606 BIOGRID
DNMT1 SETD7 Affinity Capture-Western 19282482 9606 9606 BIOGRID
DNMT1 UHRF1 Co-localization 19943104 9606 9606 BIOGRID
DNMT1 SP1 Affinity Capture-Western 17124180 9606 9606 BIOGRID
DNMT1 SP3 Affinity Capture-Western 17124180 9606 9606 BIOGRID
DNMT1 EHMT2 Affinity Capture-Western 17085482 9606 9606 BIOGRID
DNMT1 SUV39H1 Affinity Capture-Western 17085482 9606 9606 BIOGRID
DNMT1 EZH2 Affinity Capture-Western 16357870 9606 9606 BIOGRID
DNMT1 RB1 Affinity Capture-Western 11847125 9606 9606 BIOGRID
DNMT1 STAT3 Affinity Capture-Western 15870198 9606 9606 BIOGRID
DNMT1 HDAC1 Affinity Capture-Western 15870198 9606 9606 BIOGRID
DNMT1 SMARCA5 Affinity Capture-Western 15313181 9606 9606 BIOGRID
DNMT1 CHEK1 Affinity Capture-Western 17991895 9606 9606 BIOGRID
DNMT1 HSPA4 Affinity Capture-MS 21745816 9606 9606 BIOGRID
DNMT1 SNRPG Affinity Capture-MS 21745816 9606 9606 BIOGRID
DNMT1 HSPA5 Affinity Capture-MS 21745816 9606 9606 BIOGRID
DNMT1 USP7 Affinity Capture-MS 21745816 9606 9606 BIOGRID
DNMT1 UHRF1 Affinity Capture-Western 21745816 9606 9606 BIOGRID
DNMT1 USP7 Affinity Capture-Western 21745816 9606 9606 BIOGRID
DNMT1 USP7 Reconstituted Complex 21745816 9606 9606 BIOGRID
DNMT1 UHRF1 Reconstituted Complex 21745816 9606 9606 BIOGRID
DNMT1 RAD9A Affinity Capture-Western 20940144 9606 9606 BIOGRID
DNMT1 PCNA Affinity Capture-Western 20940144 9606 9606 BIOGRID
DNMT1 CHEK1 Affinity Capture-Western 20940144 9606 9606 BIOGRID
DNMT1 USP7 Affinity Capture-Western 21268065 9606 9606 BIOGRID
DNMT1 HDAC1 Co-localization 17707923 9606 9606 BIOGRID
DNMT1 AKT1 Affinity Capture-Western 21151116 9606 9606 BIOGRID
DNMT1 AKT1 Reconstituted Complex 21151116 9606 9606 BIOGRID
DNMT1 USP7 Affinity Capture-MS 21045206 9606 9606 BIOGRID
DNMT1 USP7 Affinity Capture-Western 21045206 9606 9606 BIOGRID
DNMT1 UHRF1 Affinity Capture-Western 21045206 9606 9606 BIOGRID
DNMT1 DAXX Affinity Capture-Western 14978102 9606 9606 BIOGRID
DNMT1 UHRF1 Affinity Capture-Western 22064703 9606 9606 BIOGRID
DNMT1 UHRF2 Affinity Capture-Western 22064703 9606 9606 BIOGRID
DNMT1 SIRT1 Affinity Capture-Western 21947282 9606 9606 BIOGRID
DNMT1 DNMT1 Affinity Capture-Western 19173286 9606 9606 BIOGRID
DNMT1 DNMT3B Phenotypic Suppression 18095639 9606 9606 BIOGRID
DNMT1 USP7 Affinity Capture-Western 22411829 9606 9606 BIOGRID
DNMT1 RUNX1T1 Affinity Capture-Western 15735013 9606 9606 BIOGRID
DNMT1 RUNX1 Affinity Capture-Western 15735013 9606 9606 BIOGRID
DNMT1 RUNX1T1 Co-localization 15735013 9606 9606 BIOGRID
DNMT1 RUNX1 Co-localization 15735013 9606 9606 BIOGRID
DNMT1 RUNX1 Two-hybrid 15735013 9606 9606 BIOGRID
DNMT1 RUNX1T1 Two-hybrid 15735013 9606 9606 BIOGRID
DNMT1 PCNA Protein-peptide 22606318 9606 9606 BIOGRID
DNMT1 PCNA Reconstituted Complex 22606318 9606 9606 BIOGRID
DNMT1 PCNA Affinity Capture-Western 22606318 9606 9606 BIOGRID
DNMT1 KDM1A Affinity Capture-Western 22278882 9606 9606 BIOGRID
DNMT1 HDAC1 Affinity Capture-Western 22274925 9606 9606 BIOGRID
DNMT1 NR2C2 Affinity Capture-Western 21670149 9606 9606 BIOGRID
DNMT1 NR2C1 Affinity Capture-Western 21670149 9606 9606 BIOGRID
DNMT1 KDM1A Affinity Capture-Western 21670149 9606 9606 BIOGRID
DNMT1 HDAC1 Affinity Capture-Western 21670149 9606 9606 BIOGRID
DNMT1 HDAC2 Affinity Capture-Western 21670149 9606 9606 BIOGRID
DNMT1 MTA1 Affinity Capture-Western 21670149 9606 9606 BIOGRID
DNMT1 MTA2 Affinity Capture-Western 21670149 9606 9606 BIOGRID
DNMT1 CHD4 Affinity Capture-Western 21670149 9606 9606 BIOGRID
DNMT1 RBBP4 Affinity Capture-Western 21670149 9606 9606 BIOGRID
DNMT1 MBD3 Affinity Capture-Western 21670149 9606 9606 BIOGRID
DNMT1 POLD3 Affinity Capture-Western 21670149 9606 9606 BIOGRID
DNMT1 HDAC3 Affinity Capture-Western 21670149 9606 9606 BIOGRID
DNMT1 UHRF1 Affinity Capture-Western 17673620 9606 9606 BIOGRID
DNMT1 UHRF1 Reconstituted Complex 17673620 9606 9606 BIOGRID
DNMT1 PCNA Affinity Capture-Western 20613874 9606 9606 BIOGRID
DNMT1 UHRF1 Affinity Capture-Western 20613874 9606 9606 BIOGRID
DNMT1 SIRT1 Affinity Capture-Western 22094255 9606 9606 BIOGRID
DNMT1 EZH2 Affinity Capture-Western 22094255 9606 9606 BIOGRID
DNMT1 EED Affinity Capture-Western 22094255 9606 9606 BIOGRID
DNMT1 DAXX Affinity Capture-Western 23548901 9606 9606 BIOGRID
DNMT1 NRIP1 Co-localization 17972916 9606 9606 BIOGRID
DNMT1 TP53 Affinity Capture-Western 23038753 9606 9606 BIOGRID
DNMT1 DAXX Affinity Capture-Western 23038753 9606 9606 BIOGRID
DNMT1 CHD4 Affinity Capture-MS 23708667 9606 9606 BIOGRID
DNMT1 EHMT2 Affinity Capture-MS 23708667 9606 9606 BIOGRID
DNMT1 PARP1 Affinity Capture-MS 23708667 9606 9606 BIOGRID
DNMT1 MTA2 Affinity Capture-MS 23708667 9606 9606 BIOGRID
DNMT1 PCNA Affinity Capture-MS 23708667 9606 9606 BIOGRID
DNMT1 CHD4 Affinity Capture-Western 23708667 9606 9606 BIOGRID
DNMT1 HDAC1 Affinity Capture-Western 23708667 9606 9606 BIOGRID
DNMT1 HDAC2 Affinity Capture-Western 23708667 9606 9606 BIOGRID
DNMT1 MTA1 Affinity Capture-Western 23708667 9606 9606 BIOGRID
DNMT1 MTA2 Affinity Capture-Western 23708667 9606 9606 BIOGRID
DNMT1 CHD4 Co-localization 23708667 9606 9606 BIOGRID
DNMT1 MTA1 Co-fractionation 26344197 9606 9606 BIOGRID
DNMT1 UHRF1 Affinity Capture-Western 26065575 9606 9606 BIOGRID
DNMT1 HIST3H3 Affinity Capture-Western 26065575 9606 9606 BIOGRID
DNMT1 HIST2H2AC Affinity Capture-Western 26065575 9606 9606 BIOGRID
DNMT1 MKL1 Affinity Capture-Western 25854163 9606 9606 BIOGRID
DNMT1 STAT3 Affinity Capture-Western 25854163 9606 9606 BIOGRID
DNMT1 USP7 Reconstituted Complex 25960197 9606 9606 BIOGRID
DNMT1 USP7 Co-crystal Structure 25960197 9606 9606 BIOGRID
DNMT1 USP7 Affinity Capture-Western 25960197 9606 9606 BIOGRID
DNMT1 UHRF1 Co-localization 27049577 9606 9606 BIOGRID
DNMT1 SNAI1 Affinity Capture-Western 26794444 9606 9606 BIOGRID
DNMT1 HDAC1 Affinity Capture-Western 26794444 9606 9606 BIOGRID
DNMT1 UHRF1 Reconstituted Complex 27045799 9606 9606 BIOGRID
DNMT1 RBBP7 Affinity Capture-Western 28143904 9606 9606 BIOGRID
DNMT1 CUL4B Affinity Capture-Western 24292684 9606 9606 BIOGRID
DNMT1 HIC1 Affinity Capture-Western 27720955 9606 9606 BIOGRID
DNMT1 NDUFA4L2 Positive Genetic 28319085 9606 9606 BIOGRID
DNMT1 RNF4 Affinity Capture-Western 29634367 9606 9606 BIOGRID
DNMT1 DCAF5 Affinity Capture-MS 29691401 9606 9606 BIOGRID
DNMT1 DDB1 Affinity Capture-MS 29691401 9606 9606 BIOGRID
DNMT1 L3MBTL3 Affinity Capture-MS 29691401 9606 9606 BIOGRID
DNMT1 PHF20L1 Affinity Capture-MS 29691401 9606 9606 BIOGRID
DNMT1 DNMT3A Affinity Capture-MS 29691401 9606 9606 BIOGRID
DNMT1 UHRF1 Affinity Capture-MS 29691401 9606 9606 BIOGRID
DNMT1 UHRF1BP1 Affinity Capture-MS 29691401 9606 9606 BIOGRID
DNMT1 DNMT3B Affinity Capture-MS 29691401 9606 9606 BIOGRID
DNMT1 UHRF2 Affinity Capture-MS 29691401 9606 9606 BIOGRID
DNMT1 UHRF1BP1L Affinity Capture-MS 29691401 9606 9606 BIOGRID
DNMT1 CUL4B Affinity Capture-MS 29691401 9606 9606 BIOGRID
DNMT1 COPS2 Affinity Capture-MS 29691401 9606 9606 BIOGRID
DNMT1 DCAF5 Affinity Capture-Western 29691401 9606 9606 BIOGRID
DNMT1 L3MBTL3 Affinity Capture-Western 29691401 9606 9606 BIOGRID
DNMT1 L3MBTL3 Protein-peptide 29691401 9606 9606 BIOGRID
DNMT1 DCAF5 Protein-peptide 29691401 9606 9606 BIOGRID
DNMT1 EZH2 Co-localization 31130994 9606 9606 BIOGRID
DNMT1 TMC6 Affinity Capture-RNA 30938030 9606 9606 BIOGRID
DNMT1 CDK5 Affinity Capture-Western 26602018 9606 9606 BIOGRID
DNMT1 FKBP4 Affinity Capture-Western 26602018 9606 9606 BIOGRID
DNMT1 CDK5R1 Affinity Capture-Western 26602018 9606 9606 BIOGRID
DNMT1 UHRF1 Affinity Capture-Western 31322780 9606 9606 BIOGRID
DNMT1 UHRF1 FRET 31322780 9606 9606 BIOGRID
DNMT1 HIST1H2BH Proximity Label-MS 30021884 9606 9606 BIOGRID
DNMT1 KIAA0101 Protein-peptide 32144273 9606 9606 BIOGRID
DNMT1 HIST1H3A Protein-peptide 32144273 9606 9606 BIOGRID
DNMT1 DDX11 Affinity Capture-RNA 31097223 9606 9606 BIOGRID
DNMT1 RELN Co-localization 25476119 9606 9606 BIOGRID
DNMT1 GAD1 Co-localization 25476119 9606 9606 BIOGRID
DNMT1 BDNF Co-localization 25476119 9606 9606 BIOGRID
DNMT1 HHT1 Affinity Capture-Western 18158899 9606 559292 BIOGRID
DNMT1 HHT2 Affinity Capture-Western 18158899 9606 559292 BIOGRID
DNMT1 ezh2-a Co-localization 31130994 9606 8355 BIOGRID
 Annotation of DNMT1
 TCGA cancer survival map of DNMT1


Calculate the hazards ratio based on Cox PH Model.
Add the 95% CI as dotted line.
Reset Add The plot axis-x order will follow the list.


Calculate the hazards ratio based on Cox PH Model.
We use log2(TPM + 1) for log-scale.
All Add
Reset The plot is based on the datasets of list.


 Disease information of  DNMT1