TcoF overview
TcoF: KDM1B
GeneID: 390245
Name: Lysine-specific histone demethylase 1B
Ensembl: ENSG00000165097
Species: Human
Class: NA
Family: Lysine demethylase
Disease: 0
Go term: 22
Pathway: 1
Hallmark: --
Super Enhancer:

chr6:18179054-18213054 chr6:18148292-18188310 chr6:18147456-18187018

--
Enhancer:

chr6:17987380-17987630 chr6:18264230-18264610 chr6:18276670-18278890 chr6:18148150-18149210 chr6:18171710-18173630 chr6:18186040-18188450 chr6:18184520-18186000 chr6:18279540-18281670 chr6:17984840-17987280 chr6:17875860-17878120 chr6:17904760-17905310 chr6:18215360-18217620 chr6:18361570-18363390 chr6:18432200-18433560 chr6:18433740-18435600 chr6:18488010-18489370 chr6:18491500-18492310 chr6:18493350-18494510 chr6:18495550-18495850 chr6:17907350-17908890 chr6:18496420-18498510 chr6:18214010-18215230 chr6:18302810-18303740 chr6:18294810-18295860 chr6:18284260-18285280 chr6:17908920-17909500 chr6:17927950-17929290 chr6:17929360-17929710 chr6:17929820-17931270 chr6:17931720-17933780 chr6:17933980-17934220 chr6:17964480-17966700 chr6:17967710-17968050 chr6:17968200-17969560 chr6:18226470-18228410 chr6:18241770-18244010 chr6:18343310-18345720 chr6:17983580-17984560 chr6:17938810-17941060 chr6:17971540-17973440 chr6:17980860-17982310 chr6:18015820-18017350 chr6:18027540-18029880 chr6:18047060-18048980 chr6:18052680-18055080 chr6:18055600-18057850 chr6:18146910-18148050 chr6:18341270-18341720 chr6:18350300-18351690 chr6:18409280-18411520 chr6:18500660-18503030 chr6:18022200-18024600 chr6:18160750-18161550 chr6:18161690-18162960 chr6:18042220-18044090 chr6:18051370-18052650 chr6:18245620-18246520 chr6:18293400-18294140 chr6:17601350-17602820 chr6:17850690-17852180 chr6:17878960-17880510 chr6:17937100-17937440 chr6:17973500-17974240 chr6:17974440-17976340 chr6:18119350-18120250 chr6:18325720-18326930 chr6:18346300-18348570 chr6:18349490-18350070 chr6:18421410-18423580 chr6:18424610-18426130 chr6:18457590-18459400 chr6:18515580-18516520 chr6:17579800-17581340 chr6:17913730-17914350 chr6:18394520-18396290 chr6:18399930-18402150 chr6:18115360-18116160 chr6:18584250-18586560

--
Promoter:

chr6:18155560-18224085

False
 ChIP-seq based regulatory details of KDM1B
select * from encode where Experiment_target='KDM1B'
Sample ID Experiment target Biosample type Biosample term name GSM ID Tissue type Source
TcoF_00_21449 KDM1B cell line HepG2 GSM1442984 Liver Cistrome
 Downstream target genes of KDM1B
 Protein-protein interaction of KDM1B
OFFICIAL_SYMBOL_A OFFICIAL_SYMBOL_B EXPERIMENTAL_SYSTEM PUBMED_ID ORGANISM_A_ID ORGANISM_B_ID SOURCE
KDM1B WHSC1L1 Affinity Capture-MS 20670891 9606 9606 BIOGRID
KDM1B EHMT2 Affinity Capture-MS 20670891 9606 9606 BIOGRID
KDM1B PAXIP1 Affinity Capture-MS 20670891 9606 9606 BIOGRID
KDM1B CCNT1 Affinity Capture-MS 20670891 9606 9606 BIOGRID
KDM1B WDR5 Affinity Capture-MS 20670891 9606 9606 BIOGRID
KDM1B DYNC1I2 Affinity Capture-MS 26496610 9606 9606 BIOGRID
KDM1B BAP1 Affinity Capture-MS 26496610 9606 9606 BIOGRID
KDM1B COX5A Affinity Capture-MS 26496610 9606 9606 BIOGRID
KDM1B CASC3 Affinity Capture-MS 26496610 9606 9606 BIOGRID
KDM1B CPSF3 Affinity Capture-MS 26496610 9606 9606 BIOGRID
KDM1B WHSC1L1 Affinity Capture-MS 26496610 9606 9606 BIOGRID
KDM1B HEATR3 Affinity Capture-MS 26496610 9606 9606 BIOGRID
KDM1B CEP192 Affinity Capture-MS 26496610 9606 9606 BIOGRID
KDM1B ASXL2 Affinity Capture-MS 26496610 9606 9606 BIOGRID
KDM1B KDM1B Biochemical Activity 25773598 9606 9606 BIOGRID
KDM1B UBE2D3 Reconstituted Complex 25773598 9606 9606 BIOGRID
KDM1B OGT Biochemical Activity 25773598 9606 9606 BIOGRID
KDM1B OGT Affinity Capture-Western 25773598 9606 9606 BIOGRID
KDM1B HIST3H3 Biochemical Activity 25773598 9606 9606 BIOGRID
KDM1B HIST1H3A Co-crystal Structure 23266887 9606 9606 BIOGRID
 Annotation of KDM1B
 TCGA cancer survival map of KDM1B


Calculate the hazards ratio based on Cox PH Model.
Add the 95% CI as dotted line.
Reset Add The plot axis-x order will follow the list.


Calculate the hazards ratio based on Cox PH Model.
We use log2(TPM + 1) for log-scale.
All Add
Reset The plot is based on the datasets of list.


 Disease information of  KDM1B