TcoF overview
| TcoF: | KDM4B | |
| GeneID: | 9516 | |
| Name: | Lysine-specific demethylase 4B | |
| Ensembl: | ENSG00000127663 | |
| Species: | Human | |
| Class: | class 2 | |
| Family: | Lysine demethylase | |
| Disease: | 6 | |
| Go term: | 10 | |
| Pathway: | 2 | |
| Hallmark: | -- | |
| Super Enhancer: |
chr19:4909058-4928038 chr19:4908792-4930029 chr19:4909281-4929081 chr19:4908932-4931702 chr19:4908836-4933366 chr19:5125076-5133870 chr19:5127361-5133559 chr19:5121620-5132688 chr19:5097609-5105680 chr19:5125074-5134178 chr19:5077727-5104168 chr19:5120333-5144338 chr19:4970759-4993472 chr19:5106412-5136726 chr19:4968100-5006787 chr19:5092594-5141462 chr19:4969377-5005419 chr19:5121560-5144313 chr19:4969349-5026122 chr19:4968089-4990809 chr19:5133884-5151539 chr19:5110620-5119871 chr19:5133876-5151534 chr19:5110612-5119879 chr19:5082359-5082530 chr19:5122051-5140022 chr19:5089736-5099205 chr19:5109066-5133478 chr19:5123007-5133269 chr19:5123428-5133391 chr19:5084654-5100902 chr19:5122972-5132597 chr19:5123040-5133108 chr19:4970866-5002533 chr19:5125595-5143739 chr19:5126024-5133226 chr19:4968906-5003580 chr19:4969312-5024093 chr19:5139532-5170744 chr19:5062272-5078356 chr19:5089711-5152964 chr19:5079129-5144356 chr19:5003780-5157095 chr19:5089295-5157123 chr19:5024888-5068876 chr19:5003644-5158218 chr19:5082601-5157167 chr19:5003857-5069063 chr19:5023018-5174113 chr19:5078963-5151205 chr19:5090561-5131041 chr19:5090740-5128827 chr19:5110713-5137263 chr19:5090594-5142915 chr19:5127223-5131242 chr19:4966617-5003213 chr19:4908485-4990939 chr19:4950368-4989452 chr19:4943777-4989740 chr19:4909123-4989468 chr19:4908621-5156963 |
|
| Enhancer: |
chr19:4983180-4984970 chr19:4985340-4985940 chr19:5024050-5025800 chr19:5120900-5122620 chr19:4972160-4973280 chr19:5092570-5094080 chr19:5108440-5110630 chr19:5286760-5289190 chr19:5289380-5290310 chr19:5290490-5291040 chr19:5397510-5398850 chr19:4668650-4670170 chr19:5095020-5096180 chr19:5307920-5310380 chr19:4692180-4694670 chr19:4987020-4989390 chr19:5172690-5174090 chr19:4229620-4231180 chr19:5135570-5136350 chr19:4836760-4838340 chr19:4852310-4852910 chr19:4640170-4642520 chr19:4861420-4863000 chr19:5142480-5143970 chr19:5150460-5151340 chr19:5225860-5226450 chr19:5237030-5238920 chr19:5250080-5252300 chr19:5270710-5271570 chr19:5364300-5365140 chr19:5369160-5370520 chr19:5377460-5378040 chr19:5403660-5404600 chr19:5479870-5481000 chr19:5498850-5500090 chr19:5539040-5540110 chr19:5191910-5194300 chr19:4557030-4557170 chr19:4557240-4558030 chr19:4872780-4874500 chr19:4247170-4249220 chr19:4327220-4327310 chr19:4327380-4328670 chr19:4328810-4329950 chr19:4343990-4345210 chr19:4388120-4389850 chr19:4425230-4426740 chr19:4454090-4455210 chr19:4695570-4697560 chr19:4706810-4707720 chr19:4707880-4708970 chr19:4709260-4711500 chr19:4711810-4714090 chr19:4741980-4744140 chr19:4744460-4745480 chr19:5018140-5019250 chr19:5034070-5036510 chr19:5090640-5092530 chr19:5112150-5114040 chr19:5186060-5187000 chr19:4390310-4392400 chr19:4504960-4507450 chr19:4865320-4867620 chr19:5045040-5047480 chr19:4844810-4846920 chr19:4606220-4608320 chr19:4609740-4610780 chr19:4694840-4695380 chr19:4697660-4698070 chr19:4704320-4705860 chr19:4714350-4716520 chr19:4877420-4879720 chr19:4889090-4890220 chr19:5297600-5299500 chr19:5321360-5322780 chr19:4959310-4959870 chr19:4860420-4861340 chr19:5006000-5006950 chr19:5828340-5830640 chr19:4592470-4594010 chr19:5016890-5017630 chr19:5132020-5133890 chr19:4991000-4993010 chr19:4745550-4745920 chr19:4814020-4815940 chr19:4894720-4896680 chr19:5057720-5060120 chr19:5060380-5061410 chr19:5071590-5072360 chr19:4799930-4801690 chr19:5176160-5178250 chr19:4337210-4338520 chr19:4366990-4368850 chr19:4491830-4493690 chr19:4555580-4555990 chr19:4556100-4556960 chr19:4649310-4650560 chr19:4689740-4690880 chr19:4957680-4958720 chr19:5140570-5141120 chr19:5141230-5141760 chr19:5352050-5353000 chr19:4933440-4933910 chr19:5076620-5077120 chr19:5134070-5135340 chr19:5137490-5137630 chr19:5137690-5137970 chr19:5260830-5262250 |
|
| Promoter: |
chr19:4969124-5153609 |
ChIP-seq based regulatory details of KDM4B
| Sample ID | Experiment target | Biosample type | Biosample term name | GSM ID | Tissue type | Source |
|---|---|---|---|---|---|---|
| TcoF_00_10062 | KDM4B | cell line | K562 | - | Bone Marrow | ENCODE |
| TcoF_00_10079 | KDM4B | cell line | K562 | - | Bone Marrow | ENCODE |
| TcoF_00_40510 | KDM4B | cell line | K-562 | - | Bone Marrow | ReMap |
| TcoF_00_20700 | KDM4B | cell line | K562 | - | Bone Marrow | Cistrome |
Downstream target genes of KDM4B
Upstream regulatory details of KDM4B
Protein-protein interaction of KDM4B
| OFFICIAL_SYMBOL_A | OFFICIAL_SYMBOL_B | EXPERIMENTAL_SYSTEM | PUBMED_ID | ORGANISM_A_ID | ORGANISM_B_ID | SOURCE |
|---|---|---|---|---|---|---|
| KDM4B | KMT2D | Affinity Capture-MS | 21502505 | 9606 | 9606 | BIOGRID |
| KDM4B | ASH2L | Affinity Capture-MS | 21502505 | 9606 | 9606 | BIOGRID |
| KDM4B | RBBP5 | Affinity Capture-MS | 21502505 | 9606 | 9606 | BIOGRID |
| KDM4B | WDR5 | Affinity Capture-MS | 21502505 | 9606 | 9606 | BIOGRID |
| KDM4B | HNRNPU | Affinity Capture-MS | 21502505 | 9606 | 9606 | BIOGRID |
| KDM4B | HSPA4 | Affinity Capture-MS | 21502505 | 9606 | 9606 | BIOGRID |
| KDM4B | ESR1 | Affinity Capture-MS | 21502505 | 9606 | 9606 | BIOGRID |
| KDM4B | WDR5 | Affinity Capture-Western | 21502505 | 9606 | 9606 | BIOGRID |
| KDM4B | RBBP5 | Affinity Capture-Western | 21502505 | 9606 | 9606 | BIOGRID |
| KDM4B | ASH2L | Affinity Capture-Western | 21502505 | 9606 | 9606 | BIOGRID |
| KDM4B | KMT2D | Affinity Capture-Western | 21502505 | 9606 | 9606 | BIOGRID |
| KDM4B | KMT2C | Affinity Capture-Western | 21502505 | 9606 | 9606 | BIOGRID |
| KDM4B | WDR5 | Co-fractionation | 21502505 | 9606 | 9606 | BIOGRID |
| KDM4B | RBBP5 | Co-fractionation | 21502505 | 9606 | 9606 | BIOGRID |
| KDM4B | ASH2L | Co-fractionation | 21502505 | 9606 | 9606 | BIOGRID |
| KDM4B | KMT2D | Co-fractionation | 21502505 | 9606 | 9606 | BIOGRID |
| KDM4B | ESR1 | Co-fractionation | 21502505 | 9606 | 9606 | BIOGRID |
| KDM4B | ESR1 | Affinity Capture-Western | 21502505 | 9606 | 9606 | BIOGRID |
| KDM4B | SMU1 | Co-fractionation | 22939629 | 9606 | 9606 | BIOGRID |
| KDM4B | HSP90AA2P | Affinity Capture-MS | 23589305 | 9606 | 9606 | BIOGRID |
| KDM4B | HSP90B1 | Affinity Capture-MS | 23589305 | 9606 | 9606 | BIOGRID |
| KDM4B | HSP90AA2P | Affinity Capture-Western | 23589305 | 9606 | 9606 | BIOGRID |
| KDM4B | HSP90B1 | Affinity Capture-Western | 23589305 | 9606 | 9606 | BIOGRID |
| KDM4B | DDX3X | Co-fractionation | 26344197 | 9606 | 9606 | BIOGRID |
| KDM4B | KDM4A | Affinity Capture-MS | 28514442 | 9606 | 9606 | BIOGRID |
| KDM4B | CCT3 | Affinity Capture-MS | 28514442 | 9606 | 9606 | BIOGRID |
| KDM4B | CCT4 | Affinity Capture-MS | 28514442 | 9606 | 9606 | BIOGRID |
| KDM4B | CCT6B | Affinity Capture-MS | 28514442 | 9606 | 9606 | BIOGRID |
| KDM4B | CCT2 | Affinity Capture-MS | 28514442 | 9606 | 9606 | BIOGRID |
| KDM4B | CCT7 | Affinity Capture-MS | 28514442 | 9606 | 9606 | BIOGRID |
| KDM4B | CCDC85C | Affinity Capture-MS | 28514442 | 9606 | 9606 | BIOGRID |
| KDM4B | CCT5 | Affinity Capture-MS | 28514442 | 9606 | 9606 | BIOGRID |
| KDM4B | TCP1 | Affinity Capture-MS | 28514442 | 9606 | 9606 | BIOGRID |
| KDM4B | CCT6A | Affinity Capture-MS | 28514442 | 9606 | 9606 | BIOGRID |
| KDM4B | CCT8 | Affinity Capture-MS | 28514442 | 9606 | 9606 | BIOGRID |
| KDM4B | ESR1 | Affinity Capture-Western | 30418174 | 9606 | 9606 | BIOGRID |
Annotation of KDM4B
TCGA cancer survival map of KDM4B
Expression of KDM4B
Disease information of KDM4B