TcoF overview
TcoF: KDM5B
GeneID: 7403
Name: Lysine-specific demethylase 5B
Ensembl: ENSG00000117139
Species: Human
Class: NA
Family: Lysine demethylase
Disease: 3
Go term: 31
Pathway: 1
Hallmark: --
Super Enhancer:

chr1:202774940-202781425 chr1:202769622-202814205 chr1:202774913-202807500 chr1:202774000-202808972 chr1:202774937-202822335 chr1:202749934-202781880 chr1:202774978-202791100 chr1:202764740-202781330 chr1:202773052-202781084 chr1:202773051-202778007 chr1:202772589-202791614

Enhancer:

chr1:203113490-203114440 chr1:203115840-203118260 chr1:203122160-203124140 chr1:202557700-202559720 chr1:202887520-202888880 chr1:202889040-202889980 chr1:202894340-202896220 chr1:202936030-202936310 chr1:202957730-202959390 chr1:203026080-203028300 chr1:202536950-202538270 chr1:202933820-202934490 chr1:202956790-202957570 chr1:203044890-203045460 chr1:203186500-203186860 chr1:202709940-202710490 chr1:202951890-202953840 chr1:202718270-202719780 chr1:202364610-202365680 chr1:202677940-202679380 chr1:203086260-203088260 chr1:203098310-203100180 chr1:202774440-202775070 chr1:203021010-203022880 chr1:203097060-203097400 chr1:203141170-203143550 chr1:202782550-202784380 chr1:202934630-202935010 chr1:202935730-202935870 chr1:203124300-203126120 chr1:202568480-202569480 chr1:202567030-202568340 chr1:202709060-202709800 chr1:203053160-203053770 chr1:203097560-203097910 chr1:203155470-203155720 chr1:203023090-203024550 chr1:203025640-203025910 chr1:203053860-203054610 chr1:203151980-203152760 chr1:203154510-203155440 chr1:202425410-202426520 chr1:202473820-202475730 chr1:202770460-202770630 chr1:202771990-202773010 chr1:203121400-203122100 chr1:203166340-203167830 chr1:202249980-202251910 chr1:202252280-202253520 chr1:202260980-202262160 chr1:202263530-202265900 chr1:202318270-202319970 chr1:202320460-202321250 chr1:202366840-202367980 chr1:202378980-202381400 chr1:203102440-203103700 chr1:203171350-203172600 chr1:202308580-202311020 chr1:202375000-202377380 chr1:202802670-202804010 chr1:202813520-202815050 chr1:202935120-202935650 chr1:203036920-203037580 chr1:201924680-201926410 chr1:201979950-201980250 chr1:201980430-201981080 chr1:201981310-201981470 chr1:201982160-201982300 chr1:201982430-201982950 chr1:201983150-201984330 chr1:201986320-201988780 chr1:202000300-202000950 chr1:202002820-202005290 chr1:202005880-202006540 chr1:202006640-202008850 chr1:202009180-202011360 chr1:202012390-202012900 chr1:202433060-202434220 chr1:202434260-202436330 chr1:201997740-202000060 chr1:201981890-201982070 chr1:202913070-202914110 chr1:202949400-202951580 chr1:202921280-202923100 chr1:202923440-202924660 chr1:202925050-202927040 chr1:202932860-202933730 chr1:202712170-202713540 chr1:202719910-202722030 chr1:202253840-202254150 chr1:202452200-202453740 chr1:202500590-202501960 chr1:202691920-202693380 chr1:202499320-202500380 chr1:202502460-202502970 chr1:203183180-203185200 chr1:202758760-202759100 chr1:203109290-203111320 chr1:203030800-203032950 chr1:203136530-203136930 chr1:203137220-203137750 chr1:203137800-203138030 chr1:203138220-203138380 chr1:203139580-203140180 chr1:203140710-203141070 chr1:203143730-203144450 chr1:203144590-203144670 chr1:203192790-203194170 chr1:203256960-203257110 chr1:203194230-203194790 chr1:202483150-202485300

Promoter:

chr1:202693623-202778598

 ChIP-seq based regulatory details of KDM5B
Sample ID Experiment target Biosample type Biosample term name GSM ID Tissue type Source
TcoF_00_30690 KDM5B cell line hESC H1 GSM1003457 Embryo ChIP-Atlas
TcoF_00_30714 KDM5B cell line K-562 GSM1003586 Bone Marrow ChIP-Atlas
TcoF_00_40002 KDM5B cell line K-562 GSM1003586 Bone Marrow ReMap
TcoF_00_30861 KDM5B cell line MCF-7 GSM1122651 Breast ChIP-Atlas
TcoF_00_40261 KDM5B cell line MCF-7 GSM1122651 Breast ReMap
TcoF_00_30862 KDM5B cell line MCF-7 GSM1122652 Breast ChIP-Atlas
TcoF_00_30863 KDM5B cell line MCF-7 GSM1122653 Breast ChIP-Atlas
TcoF_00_30864 KDM5B cell line T-47D GSM1122659 Breast ChIP-Atlas
TcoF_00_40266 KDM5B cell line T-47D GSM1122659 Breast ReMap
TcoF_00_30865 KDM5B cell line SUM 185PE GSM1122661 Breast ChIP-Atlas
TcoF_00_40264 KDM5B cell line SUM185 GSM1122661 None ReMap
TcoF_00_30866 KDM5B cell line SUM 185PE GSM1122662 Breast ChIP-Atlas
TcoF_00_40265 KDM5B cell line SUM185_SHCTCF GSM1122662 None ReMap
TcoF_00_30867 KDM5B cell line SUM 159PT GSM1122664 Breast ChIP-Atlas
TcoF_00_40263 KDM5B cell line SUM159 GSM1122664 Breast ReMap
TcoF_00_30868 KDM5B cell line MDA-MB-231 GSM1122669 Breast ChIP-Atlas
TcoF_00_40262 KDM5B cell line MDA-MB-231 GSM1122669 Breast ReMap
TcoF_00_30869 KDM5B cell line HCC2157 GSM1122671 Breast ChIP-Atlas
TcoF_00_40260 KDM5B cell line HCC2157 GSM1122671 Breast ReMap
TcoF_00_40025 KDM5B cell line WA01 GSM2698661/GSM2698662 None ReMap
TcoF_00_30976 KDM5B cell line MCF-7 GSM2813075 Breast ChIP-Atlas
TcoF_00_30977 KDM5B cell line C49R GSM2813077 Breast ChIP-Atlas
TcoF_00_30978 KDM5B cell line C70R GSM2813079 Breast ChIP-Atlas
TcoF_00_30979 KDM5B cell line FULR GSM2813090 Breast ChIP-Atlas
TcoF_00_30980 KDM5B cell line MCF-7 GSM2813092 Breast ChIP-Atlas
TcoF_00_30981 KDM5B cell line MCF-7 GSM2813094 Breast ChIP-Atlas
TcoF_00_30982 KDM5B cell line MCF-7 GSM2813096 Breast ChIP-Atlas
TcoF_00_30983 KDM5B cell line MCF-7 GSM2813098 Breast ChIP-Atlas
TcoF_00_30984 KDM5B cell line TAMR GSM2813100 Breast ChIP-Atlas
TcoF_00_30985 KDM5B cell line C70R GSM2813102 Breast ChIP-Atlas
TcoF_00_30986 KDM5B cell line C70R GSM2813103 Breast ChIP-Atlas
TcoF_00_30987 KDM5B cell line FULR GSM2813105 Breast ChIP-Atlas
TcoF_00_30988 KDM5B cell line FULR GSM2813106 Breast ChIP-Atlas
TcoF_00_30989 KDM5B cell line MCF-7 GSM2813108 Breast ChIP-Atlas
TcoF_00_30990 KDM5B cell line MCF-7 GSM2813109 Breast ChIP-Atlas
TcoF_00_30991 KDM5B cell line TAMR GSM2813111 Breast ChIP-Atlas
TcoF_00_30992 KDM5B cell line TAMR GSM2813112 Breast ChIP-Atlas
TcoF_00_30993 KDM5B cell line FULR GSM2813118 Breast ChIP-Atlas
TcoF_00_30994 KDM5B cell line FULR GSM2813119 Breast ChIP-Atlas
TcoF_00_30995 KDM5B cell line FULR GSM2813120 Breast ChIP-Atlas
TcoF_00_30996 KDM5B cell line FULR GSM2813122 Breast ChIP-Atlas
TcoF_00_30997 KDM5B cell line MCF-7 GSM2813124 Breast ChIP-Atlas
TcoF_00_30998 KDM5B cell line MCF-7 GSM2813125 Breast ChIP-Atlas
TcoF_00_30999 KDM5B cell line C70R GSM2813127 Breast ChIP-Atlas
TcoF_00_31000 KDM5B cell line C70R GSM2813128 Breast ChIP-Atlas
TcoF_00_30399 KDM5B cell line U-937 GSM700536 Blood ChIP-Atlas
TcoF_00_30400 KDM5B cell line U-937 GSM700537 Blood ChIP-Atlas
TcoF_00_30401 KDM5B cell line U-937 GSM700538 Blood ChIP-Atlas
TcoF_00_30402 KDM5B cell line U-937 GSM700539 Blood ChIP-Atlas
TcoF_00_30403 KDM5B cell line MCF-7 GSM700754 Breast ChIP-Atlas
TcoF_00_30404 KDM5B cell line MCF-7 GSM700755 Breast ChIP-Atlas
TcoF_00_30405 KDM5B cell line MCF-7 GSM700756 Breast ChIP-Atlas
TcoF_00_30406 KDM5B cell line MCF-7 GSM700757 Breast ChIP-Atlas
TcoF_00_30407 KDM5B cell line MCF-7 GSM700758 Breast ChIP-Atlas
TcoF_00_30542 KDM5B cell line K-562 GSM831000 Bone Marrow ChIP-Atlas
TcoF_00_30546 KDM5B cell line K-562 GSM831010 Bone Marrow ChIP-Atlas
TcoF_00_30547 KDM5B cell line K-562 GSM831011 Bone Marrow ChIP-Atlas
TcoF_00_30555 KDM5B cell line hESC H1 GSM831033 Embryo ChIP-Atlas
TcoF_00_30556 KDM5B cell line hESC H1 GSM831034 Embryo ChIP-Atlas
 Downstream target genes of KDM5B
 Protein-protein interaction of KDM5B
OFFICIAL_SYMBOL_A OFFICIAL_SYMBOL_B EXPERIMENTAL_SYSTEM PUBMED_ID ORGANISM_A_ID ORGANISM_B_ID SOURCE
KDM5B FOXG1 Two-hybrid 12657635 9606 9606 BIOGRID
KDM5B PAX9 Two-hybrid 12657635 9606 9606 BIOGRID
KDM5B PAX9 Affinity Capture-Western 12657635 9606 9606 BIOGRID
KDM5B FOXG1 Affinity Capture-Western 12657635 9606 9606 BIOGRID
KDM5B CACNA1H Affinity Capture-MS 19336002 9606 9606 BIOGRID
KDM5B CDC20 Affinity Capture-MS 19336002 9606 9606 BIOGRID
KDM5B PCNX Affinity Capture-MS 19336002 9606 9606 BIOGRID
KDM5B SMARCC2 Affinity Capture-MS 19336002 9606 9606 BIOGRID
KDM5B DGKQ Affinity Capture-MS 19336002 9606 9606 BIOGRID
KDM5B CACNA1A Affinity Capture-MS 19336002 9606 9606 BIOGRID
KDM5B NR4A3 Affinity Capture-MS 19336002 9606 9606 BIOGRID
KDM5B BMP2K Affinity Capture-MS 19336002 9606 9606 BIOGRID
KDM5B VGLL3 Affinity Capture-MS 19336002 9606 9606 BIOGRID
KDM5B CDX2 Affinity Capture-MS 19336002 9606 9606 BIOGRID
KDM5B CBX4 Affinity Capture-MS 19336002 9606 9606 BIOGRID
KDM5B SLITRK3 Affinity Capture-MS 19336002 9606 9606 BIOGRID
KDM5B AXIN2 Affinity Capture-MS 19336002 9606 9606 BIOGRID
KDM5B FOXC2 Affinity Capture-MS 19336002 9606 9606 BIOGRID
KDM5B ONECUT2 Affinity Capture-MS 19336002 9606 9606 BIOGRID
KDM5B MAF Affinity Capture-MS 19336002 9606 9606 BIOGRID
KDM5B ELF4 Affinity Capture-MS 19336002 9606 9606 BIOGRID
KDM5B SLC39A6 Affinity Capture-MS 19336002 9606 9606 BIOGRID
KDM5B BRD4 Affinity Capture-MS 19336002 9606 9606 BIOGRID
KDM5B RNF43 Affinity Capture-MS 19336002 9606 9606 BIOGRID
KDM5B RBM15B Affinity Capture-MS 19336002 9606 9606 BIOGRID
KDM5B PRDM13 Affinity Capture-MS 19336002 9606 9606 BIOGRID
KDM5B GTF2A1 Affinity Capture-MS 19336002 9606 9606 BIOGRID
KDM5B DBNL Affinity Capture-MS 19336002 9606 9606 BIOGRID
KDM5B CECR6 Affinity Capture-MS 19336002 9606 9606 BIOGRID
KDM5B RHOBTB2 Affinity Capture-MS 19336002 9606 9606 BIOGRID
KDM5B TAF2 Affinity Capture-MS 19336002 9606 9606 BIOGRID
KDM5B SHOX2 Affinity Capture-MS 19336002 9606 9606 BIOGRID
KDM5B ARID1B Affinity Capture-MS 19336002 9606 9606 BIOGRID
KDM5B HOXA1 Affinity Capture-MS 19336002 9606 9606 BIOGRID
KDM5B GRIN2B Affinity Capture-MS 19336002 9606 9606 BIOGRID
KDM5B MEOX2 Affinity Capture-MS 19336002 9606 9606 BIOGRID
KDM5B CBX4 Affinity Capture-Western 19336002 9606 9606 BIOGRID
KDM5B CBX4 Reconstituted Complex 19336002 9606 9606 BIOGRID
KDM5B RB1 Affinity Capture-Western 16645588 9606 9606 BIOGRID
KDM5B AR Affinity Capture-Western 18048344 9606 9606 BIOGRID
KDM5B FOXG1 Affinity Capture-Western 17973255 9606 9606 BIOGRID
KDM5B PAX9 Affinity Capture-Western 17973255 9606 9606 BIOGRID
KDM5B LMO2 Affinity Capture-Western 17973255 9606 9606 BIOGRID
KDM5B KLF10 Reconstituted Complex 20863814 9606 9606 BIOGRID
KDM5B KLF10 Affinity Capture-Western 20863814 9606 9606 BIOGRID
KDM5B HDAC1 Affinity Capture-Western 21502505 9606 9606 BIOGRID
KDM5B RB1 Affinity Capture-Western 21980403 9606 9606 BIOGRID
KDM5B CHD3 Affinity Capture-Western 21937684 9606 9606 BIOGRID
KDM5B KDM1A Affinity Capture-Western 21937684 9606 9606 BIOGRID
KDM5B MTA2 Affinity Capture-Western 21937684 9606 9606 BIOGRID
KDM5B MTA3 Affinity Capture-Western 21937684 9606 9606 BIOGRID
KDM5B HDAC1 Affinity Capture-Western 21937684 9606 9606 BIOGRID
KDM5B HDAC2 Affinity Capture-Western 21937684 9606 9606 BIOGRID
KDM5B RBBP7 Affinity Capture-Western 21937684 9606 9606 BIOGRID
KDM5B RBBP4 Affinity Capture-Western 21937684 9606 9606 BIOGRID
KDM5B MBD2 Affinity Capture-Western 21937684 9606 9606 BIOGRID
KDM5B MBD3 Affinity Capture-Western 21937684 9606 9606 BIOGRID
KDM5B KDM1A Reconstituted Complex 21937684 9606 9606 BIOGRID
KDM5B MBD3 Reconstituted Complex 21937684 9606 9606 BIOGRID
KDM5B HDAC1 Reconstituted Complex 21937684 9606 9606 BIOGRID
KDM5B PAX9 Affinity Capture-Western 17373667 9606 9606 BIOGRID
KDM5B HDAC1 Affinity Capture-Western 17373667 9606 9606 BIOGRID
KDM5B HDAC4 Affinity Capture-Western 17373667 9606 9606 BIOGRID
KDM5B HDAC5 Affinity Capture-Western 17373667 9606 9606 BIOGRID
KDM5B HDAC7 Affinity Capture-Western 17373667 9606 9606 BIOGRID
KDM5B MYC Affinity Capture-Western 22371483 9606 9606 BIOGRID
KDM5B TFAP2C Affinity Capture-Western 22371483 9606 9606 BIOGRID
KDM5B CDX2 Affinity Capture-Western 23202735 9606 9606 BIOGRID
KDM5B CBX4 Affinity Capture-Western 23970103 9606 9606 BIOGRID
KDM5B KMT2A Negative Genetic 26864203 9606 9606 BIOGRID
KDM5B DHX37 Affinity Capture-MS 24981860 9606 9606 BIOGRID
KDM5B PROSC Affinity Capture-MS 24981860 9606 9606 BIOGRID
KDM5B KDM4A Affinity Capture-MS 24981860 9606 9606 BIOGRID
KDM5B CHTOP Affinity Capture-MS 24981860 9606 9606 BIOGRID
 Annotation of KDM5B
 TCGA cancer survival map of KDM5B


Calculate the hazards ratio based on Cox PH Model.
Add the 95% CI as dotted line.
Reset Add The plot axis-x order will follow the list.


Calculate the hazards ratio based on Cox PH Model.
We use log2(TPM + 1) for log-scale.
All Add
Reset The plot is based on the datasets of list.


 Disease information of  KDM5B