TcoF overview
| TcoF: | LDB1 | |
| GeneID: | 9404 | |
| Name: | LIM domain-binding protein 1 | |
| Ensembl: | ENSG00000198728 | |
| Species: | Human | |
| Class: | class HC | |
| Family: | LIM | |
| Disease: | 1 | |
| Go term: | 29 | |
| Pathway: | -- | |
| Hallmark: | -- | |
| Super Enhancer: |
chr10:103876204-103882217 chr10:103874658-103882740 chr10:103871646-103882837 chr10:103876920-103882552 chr10:103873507-103883030 chr10:103872101-103883317 chr10:103873540-103883099 chr10:103873474-103882265 chr10:103873689-103883292 chr10:103872757-103883566 chr10:103869687-103881649 chr10:103873467-103882941 chr10:103876434-103882669 chr10:103872429-103882282 chr10:103872747-103881470 chr10:103872071-103881566 chr10:103863964-103882143 chr10:103872409-103881341 chr10:103872303-103882500 chr10:103872628-103882238 chr10:103876059-103882327 chr10:103873447-103881355 chr10:103872524-103882487 chr10:103876209-103882198 chr10:103871869-103883221 chr10:103872470-103882444 chr10:103863782-103881500 chr10:103864017-103881756 chr10:103872695-103882023 chr10:103872110-103882241 chr10:103872110-103882241 chr10:103876579-103881530 chr10:103873616-103894720 chr10:103871522-103895029 chr10:103871304-103894946 chr10:103872865-103896781 chr10:103872425-103895235 chr10:103876244-103894115 chr10:103876531-103894376 chr10:103873452-103894324 chr10:103873685-103894689 chr10:103874548-103894562 chr10:103872726-103896310 chr10:103873530-103894748 chr10:103873660-103894099 chr10:103872951-103896658 chr10:103873615-103894748 chr10:103876778-103894647 chr10:103873581-103894590 chr10:103873847-103893890 chr10:103872949-103894148 chr10:103873716-103894136 chr10:103873667-103894613 chr10:103873570-103894411 chr10:103873591-103894404 chr10:103873738-103894614 chr10:103873610-103894489 chr10:103873778-103894083 chr10:103872816-103894831 chr10:103873729-103893698 chr10:103872268-103896491 chr10:103872078-103896886 chr10:103873639-103894936 chr10:103873597-103894884 chr10:103872692-103897415 chr10:103873497-103894898 chr10:103873492-103896236 chr10:103864083-103896153 chr10:103871795-103894952 chr10:103872663-103894094 chr10:103871665-103894918 chr10:103872517-103895029 chr10:103872243-103894085 chr10:103873561-103896420 chr10:103872345-103896198 chr10:103873548-103894110 chr10:103874808-103893272 chr10:103873791-103893404 chr10:103871610-103897725 chr10:103874779-103894362 chr10:103872048-103897685 chr10:103871970-103895178 chr10:103871941-103895171 chr10:103876347-103895220 chr10:103872031-103895114 chr10:103871852-103896404 chr10:103876453-103894808 chr10:103872227-103894854 chr10:103872149-103895041 chr10:103873266-103894898 chr10:103872292-103895084 chr10:103872168-103894982 chr10:103872507-103894925 chr10:103872418-103895288 chr10:103872244-103895002 chr10:103872465-103894971 chr10:103871840-103895804 chr10:103872598-103894871 chr10:103872599-103894884 chr10:103872475-103894858 chr10:103872080-103895421 chr10:103872240-103896024 chr10:103872823-103895008 chr10:103864467-103895942 chr10:103872601-103894842 chr10:103863372-103895020 chr10:103872270-103895042 chr10:103876315-103894994 chr10:103872161-103894985 chr10:103872117-103894811 chr10:103872760-103894663 chr10:103874794-103893413 chr10:103872146-103896105 chr10:103872058-103894935 chr10:103871855-103896079 chr10:103872611-103896425 chr10:103872364-103896082 chr10:103863672-103895246 |
|
| Enhancer: |
chr10:103912290-103914730 chr10:103917310-103917800 chr10:103917970-103918940 chr10:103989340-103989940 chr10:104120880-104121470 chr10:104155740-104156000 chr10:104163190-104163590 chr10:104287500-104289250 chr10:104267510-104268920 chr10:103879720-103879840 chr10:103769210-103769730 chr10:103769780-103771470 chr10:103783510-103784910 chr10:103827800-103829650 chr10:103986410-103987380 chr10:104158620-104159040 chr10:104228960-104229740 chr10:104231150-104232610 chr10:104236800-104238980 chr10:104245490-104247900 chr10:104488290-104489070 chr10:103416830-103417180 chr10:103503980-103505630 chr10:103583380-103585730 chr10:103589700-103590820 chr10:103686020-103686570 chr10:103712820-103713350 chr10:103771540-103772580 chr10:103772630-103773430 chr10:103779310-103780180 chr10:103799960-103801700 chr10:103845030-103847070 chr10:103859020-103859520 chr10:103366300-103368590 chr10:103590920-103593410 chr10:103813970-103815840 chr10:103991550-103991710 chr10:103732180-103732870 chr10:103763580-103764950 chr10:103726370-103727240 chr10:103432410-103432670 chr10:103484090-103486540 chr10:103615780-103618130 chr10:103618310-103619780 chr10:103682650-103683790 chr10:103733040-103734960 chr10:103745160-103747230 chr10:103760320-103761720 chr10:103554710-103556210 chr10:103736750-103737170 chr10:103839600-103841530 chr10:104233770-104235470 chr10:103527260-103528110 chr10:103870460-103870620 chr10:103870730-103870820 chr10:103990860-103991340 chr10:104117940-104118260 chr10:104159950-104160030 chr10:104161280-104161500 chr10:104161680-104161800 chr10:104161920-104162000 chr10:104210900-104211140 chr10:103441820-103443860 chr10:103572410-103572700 chr10:103588960-103589600 chr10:103597000-103599500 chr10:103695270-103697310 chr10:103697440-103699610 chr10:103699700-103701010 chr10:103701120-103701410 chr10:103720570-103722150 chr10:103919100-103919180 chr10:103934730-103936080 chr10:104006230-104007400 chr10:104007530-104008000 chr10:104027200-104029430 chr10:104039280-104041470 chr10:104058700-104060900 chr10:104072310-104073800 chr10:104098400-104100430 chr10:104101970-104103800 chr10:104103940-104105170 chr10:104167020-104168650 chr10:104276240-104278510 chr10:104282740-104283770 chr10:104307700-104309280 chr10:104315210-104316760 chr10:104352480-104353390 chr10:104353480-104353740 chr10:104363510-104364980 chr10:104387000-104388760 chr10:104388820-104389820 chr10:104432220-104433480 chr10:104466890-104468180 chr10:104486010-104486360 chr10:104503900-104506390 chr10:104536180-104538440 chr10:104538580-104539040 chr10:104365420-104366220 chr10:104069720-104071920 chr10:104464170-104465100 chr10:103608680-103609530 chr10:103755110-103756200 chr10:104250790-104251680 chr10:104042940-104043380 chr10:104044290-104045440 chr10:104191160-104191270 chr10:103738890-103740490 chr10:103838500-103839530 chr10:103849340-103851760 chr10:103851880-103853250 chr10:103915080-103916770 chr10:103958390-103959120 chr10:104156090-104156200 chr10:104156240-104156480 chr10:103271580-103274070 chr10:103615160-103615760 chr10:103708800-103709670 chr10:103715400-103716350 chr10:103781090-103782170 chr10:103610930-103613220 chr10:103792600-103792780 chr10:104441230-104442300 chr10:103957530-103958330 chr10:104045530-104046980 chr10:104136900-104139040 chr10:103716480-103717400 chr10:103789500-103790260 chr10:104418080-104419450 chr10:103588650-103588830 chr10:103507810-103510010 chr10:103518920-103519880 chr10:104093240-104095620 chr10:104127320-104127970 chr10:103668020-103669530 chr10:103917090-103917180 chr10:103780690-103781040 chr10:103811040-103812810 chr10:103813100-103813360 |
|
| Promoter: |
chr10:103867317-103880210 |
ChIP-seq based regulatory details of LDB1
| Sample ID | Experiment target | Biosample type | Biosample term name | GSM ID | Tissue type | Source |
|---|---|---|---|---|---|---|
| TcoF_00_21091 | LDB1 | cell line | None | GSM1273197 | Blood | Cistrome |
| TcoF_00_40792 | LDB1 | cell line | HEP | GSM1273197 | None | ReMap |
| TcoF_00_30163 | LDB1 | cell line | Macrophages | GSM3394844 | Blood | ChIP-Atlas |
| TcoF_00_30164 | LDB1 | cell line | Macrophages | GSM3394845 | Blood | ChIP-Atlas |
Downstream target genes of LDB1
Upstream regulatory details of LDB1
Protein-protein interaction of LDB1
| OFFICIAL_SYMBOL_A | OFFICIAL_SYMBOL_B | EXPERIMENTAL_SYSTEM | PUBMED_ID | ORGANISM_A_ID | ORGANISM_B_ID | SOURCE |
|---|---|---|---|---|---|---|
| LDB1 | SSBP4 | Two-hybrid | 16189514 | 9606 | 9606 | BIOGRID |
| LDB1 | LMO3 | Two-hybrid | 16189514 | 9606 | 9606 | BIOGRID |
| LDB1 | SSBP2 | Two-hybrid | 16189514 | 9606 | 9606 | BIOGRID |
| LDB1 | TOLLIP | Two-hybrid | 16189514 | 9606 | 9606 | BIOGRID |
| LDB1 | LMO2 | Affinity Capture-Western | 12727888 | 9606 | 9606 | BIOGRID |
| LDB1 | LMO4 | Affinity Capture-Western | 12727888 | 9606 | 9606 | BIOGRID |
| LDB1 | TAL1 | Affinity Capture-Western | 16407974 | 9606 | 9606 | BIOGRID |
| LDB1 | TCF3 | Affinity Capture-Western | 16407974 | 9606 | 9606 | BIOGRID |
| LDB1 | CBFA2T3 | Affinity Capture-Western | 16407974 | 9606 | 9606 | BIOGRID |
| LDB1 | ESR1 | Reconstituted Complex | 19117995 | 9606 | 9606 | BIOGRID |
| LDB1 | RLIM | Affinity Capture-Western | 17437998 | 9606 | 9606 | BIOGRID |
| LDB1 | LMO2 | Affinity Capture-Western | 17437998 | 9606 | 9606 | BIOGRID |
| LDB1 | LHX2 | Two-hybrid | 20211142 | 9606 | 9606 | BIOGRID |
| LDB1 | RB1 | Affinity Capture-Western | 10866689 | 9606 | 9606 | BIOGRID |
| LDB1 | RNF6 | Affinity Capture-Western | 12874135 | 9606 | 9606 | BIOGRID |
| LDB1 | RNF38 | Affinity Capture-Western | 12874135 | 9606 | 9606 | BIOGRID |
| LDB1 | PSMD10 | Two-hybrid | 21988832 | 9606 | 9606 | BIOGRID |
| LDB1 | LMO2 | Two-hybrid | 21988832 | 9606 | 9606 | BIOGRID |
| LDB1 | PSMA1 | Two-hybrid | 21988832 | 9606 | 9606 | BIOGRID |
| LDB1 | LSM7 | Two-hybrid | 21988832 | 9606 | 9606 | BIOGRID |
| LDB1 | POLR1B | Two-hybrid | 21988832 | 9606 | 9606 | BIOGRID |
| LDB1 | SSBP3 | Two-hybrid | 25416956 | 9606 | 9606 | BIOGRID |
| LDB1 | LHX6 | Two-hybrid | 25416956 | 9606 | 9606 | BIOGRID |
| LDB1 | LHX8 | Two-hybrid | 25416956 | 9606 | 9606 | BIOGRID |
| LDB1 | BEX2 | Affinity Capture-Western | 16314316 | 9606 | 9606 | BIOGRID |
| LDB1 | TAF1 | Affinity Capture-Western | 16314316 | 9606 | 9606 | BIOGRID |
| LDB1 | LMO2 | Affinity Capture-Western | 16314316 | 9606 | 9606 | BIOGRID |
| LDB1 | LHX1 | Two-hybrid | 32296183 | 9606 | 9606 | BIOGRID |
| LDB1 | RNF38 | Affinity Capture-Western | 32021282 | 9606 | 9606 | BIOGRID |
| LDB1 | BCL9 | Affinity Capture-MS | 24981860 | 9606 | 9606 | BIOGRID |
| LDB1 | SSBP3 | Affinity Capture-MS | 24981860 | 9606 | 9606 | BIOGRID |
| LDB1 | SSBP2 | Affinity Capture-MS | 24981860 | 9606 | 9606 | BIOGRID |
| LDB1 | ORC6 | Affinity Capture-MS | 24981860 | 9606 | 9606 | BIOGRID |
| LDB1 | BCL9L | Affinity Capture-MS | 24981860 | 9606 | 9606 | BIOGRID |
| LDB1 | ISL2 | Affinity Capture-MS | 24981860 | 9606 | 9606 | BIOGRID |
| LDB1 | LHX4 | Affinity Capture-MS | 24981860 | 9606 | 9606 | BIOGRID |
| LDB1 | SSBP4 | Affinity Capture-MS | 24981860 | 9606 | 9606 | BIOGRID |
| LDB1 | rlim-a | Affinity Capture-Western | 12874135 | 9606 | 8355 | BIOGRID |
Annotation of LDB1
TCGA cancer survival map of LDB1
Expression of LDB1
Disease information of LDB1