TcoF overview
| TcoF: | NIPBL | |
| GeneID: | 25926 | |
| Name: | Nipped-B-like protein | |
| Ensembl: | ENSG00000164190 | |
| Species: | Human | |
| Class: | class HC | |
| Family: | Others | |
| Disease: | 16 | |
| Go term: | 61 | |
| Pathway: | 2 | |
| Hallmark: | 3 | |
| Super Enhancer: |
chr5:36875213-36878396 chr5:36873215-36879718 chr5:36874351-36879863 chr5:36874406-36879459 chr5:36874513-36879808 chr5:36874890-36879230 chr5:36874562-36879419 chr5:36874696-36879334 chr5:36875051-36879256 chr5:36874499-36879436 chr5:36874959-36879594 chr5:36870093-36898825 chr5:36874560-36879073 chr5:36874363-36912593 chr5:36874316-36883041 chr5:36874261-36881238 chr5:36871947-36881360 chr5:36873084-36909474 chr5:36870059-36952108 chr5:36873960-36897861 chr5:36870682-36953035 chr5:36873178-36891010 chr5:36874424-36879475 chr5:36874607-36878226 chr5:36739329-36771047 chr5:36739672-36771046 |
|
| Enhancer: |
chr5:37090100-37091300 chr5:37247850-37249350 chr5:36606840-36608430 chr5:36481510-36482320 chr5:36482750-36483530 chr5:36573200-36573960 chr5:36575220-36575920 chr5:36657320-36659090 chr5:36501780-36504270 chr5:36684100-36686160 chr5:36492160-36492440 chr5:36569500-36571400 chr5:36462080-36463400 chr5:36526170-36527600 chr5:36489940-36491180 chr5:36654240-36656180 chr5:36885230-36886470 chr5:36947890-36949110 chr5:36950040-36952040 chr5:36981700-36982640 chr5:36673400-36673740 chr5:36435680-36435980 chr5:36441740-36443220 chr5:36452440-36453200 chr5:36595740-36597340 chr5:36612880-36613930 chr5:36614470-36616790 chr5:36623050-36625060 chr5:37087850-37088760 chr5:37196400-37198800 chr5:36617970-36619890 chr5:37271640-37273920 chr5:36681880-36683960 chr5:37080330-37081120 chr5:37103220-37104070 chr5:36443770-36444050 chr5:36444220-36445510 chr5:36493300-36495680 |
|
| Promoter: |
chr5:36876871-37066515 |
ChIP-seq based regulatory details of NIPBL
| Sample ID | Experiment target | Biosample type | Biosample term name | GSM ID | Tissue type | Source |
|---|---|---|---|---|---|---|
| TcoF_00_20843 | NIPBL | cell line | LoVo | GSM1208661 | Colon | Cistrome |
| TcoF_00_20303 | NIPBL | cell line | GP5d | GSM1240822 | Colon | Cistrome |
| TcoF_00_40778 | NIPBL | cell line | GP5D | GSM1240822 | Colon | ReMap |
| TcoF_00_20305 | NIPBL | cell line | GP5d | GSM1240836 | Colon | Cistrome |
| TcoF_00_40779 | NIPBL | cell line | GP5D_SIRAD21 | GSM1240836 | Colon | ReMap |
| TcoF_00_21264 | NIPBL | cell line | Ramos | GSM1519151 | None | Cistrome |
| TcoF_00_21265 | NIPBL | cell line | Ramos | GSM1519152 | None | Cistrome |
| TcoF_00_21118 | NIPBL | cell line | None | GSM1579363 | None | Cistrome |
| TcoF_00_40892 | NIPBL | cell line | hESC | GSM1579363 | Embryo | ReMap |
| TcoF_00_21119 | NIPBL | cell line | None | GSM1579364 | None | Cistrome |
| TcoF_00_40894 | NIPBL | cell line | hESC_WNT3A | GSM1579364 | Embryo | ReMap |
| TcoF_00_21120 | NIPBL | cell line | None | GSM1579365 | None | Cistrome |
| TcoF_00_40895 | NIPBL | cell line | hESC_WNT3A_ACTIVIN | GSM1579365 | Embryo | ReMap |
| TcoF_00_21121 | NIPBL | cell line | None | GSM1579366 | None | Cistrome |
| TcoF_00_40893 | NIPBL | cell line | hESC_activin | GSM1579366 | Embryo | ReMap |
| TcoF_00_20572 | NIPBL | cell line | HepG2 | GSM2040024 | Liver | Cistrome |
| TcoF_00_40973 | NIPBL | cell line | Hep-G2 | GSM2040024 | Liver | ReMap |
| TcoF_00_20570 | NIPBL | cell line | HepG2 | GSM2040028 | Liver | Cistrome |
| TcoF_00_20135 | NIPBL | cell line | A549 | GSM2040032 | Lung | Cistrome |
| TcoF_00_40972 | NIPBL | cell line | A-549 | GSM2040032 | Lung | ReMap |
| TcoF_00_20133 | NIPBL | cell line | A549 | GSM2040036 | Lung | Cistrome |
| TcoF_00_20949 | NIPBL | cell line | MCF-7 | GSM2040040 | Breast | Cistrome |
| TcoF_00_40974 | NIPBL | cell line | MCF-7 | GSM2040040 | Breast | ReMap |
| TcoF_00_20947 | NIPBL | cell line | MCF-7 | GSM2040045 | Breast | Cistrome |
| TcoF_00_20787 | NIPBL | cell line | LCL | GSM2443453 | Blood | Cistrome |
| TcoF_00_41070 | NIPBL | cell line | GM12878 | GSM2443453 | Blood | ReMap |
| TcoF_00_20786 | NIPBL | cell line | LCL | GSM2443454 | Blood | Cistrome |
| TcoF_00_20401 | NIPBL | cell line | HCT-116 | GSM2809637 | Colon | Cistrome |
| TcoF_00_40626 | NIPBL | cell line | HCT-116_RAD21-mAC | GSM2809637 | Colon | ReMap |
| TcoF_00_20390 | NIPBL | cell line | HCT-116 | GSM2809638 | Colon | Cistrome |
| TcoF_00_40627 | NIPBL | cell line | HCT-116_RAD21-mAC_500uM_auxin | GSM2809638 | Colon | ReMap |
| TcoF_00_30107 | NIPBL | cell line | hESC H9 | GSM2816642 | Embryo | ChIP-Atlas |
| TcoF_00_40630 | NIPBL | cell line | WA09 | GSM2816642 | None | ReMap |
| TcoF_00_30108 | NIPBL | cell line | hESC H9 | GSM2816643 | Embryo | ChIP-Atlas |
| TcoF_00_40631 | NIPBL | cell line | WA09_heat-shock | GSM2816643 | None | ReMap |
| TcoF_00_30088 | NIPBL | cell line | HeLa | GSM3053249 | Uterus | ChIP-Atlas |
| TcoF_00_30090 | NIPBL | cell line | HeLa | GSM3053252 | Uterus | ChIP-Atlas |
| TcoF_00_20792 | NIPBL | cell line | LCL | GSM941219 | Blood | Cistrome |
| TcoF_00_40711 | NIPBL | cell line | LCL | GSM941219 | Blood | ReMap |
Downstream target genes of NIPBL
Upstream regulatory details of NIPBL
Protein-protein interaction of NIPBL
| OFFICIAL_SYMBOL_A | OFFICIAL_SYMBOL_B | EXPERIMENTAL_SYSTEM | PUBMED_ID | ORGANISM_A_ID | ORGANISM_B_ID | SOURCE |
|---|---|---|---|---|---|---|
| NIPBL | SP100 | Reconstituted Complex | 15882967 | 9606 | 9606 | BIOGRID |
| NIPBL | CBX3 | Reconstituted Complex | 15882967 | 9606 | 9606 | BIOGRID |
| NIPBL | SMC1A | Affinity Capture-Western | 20720539 | 9606 | 9606 | BIOGRID |
| NIPBL | SMC3 | Affinity Capture-Western | 20720539 | 9606 | 9606 | BIOGRID |
| NIPBL | MED23 | Affinity Capture-Western | 20720539 | 9606 | 9606 | BIOGRID |
| NIPBL | TOMM40 | Co-fractionation | 22939629 | 9606 | 9606 | BIOGRID |
| NIPBL | PPT1 | Co-fractionation | 22939629 | 9606 | 9606 | BIOGRID |
| NIPBL | SF3A2 | Co-fractionation | 22939629 | 9606 | 9606 | BIOGRID |
| NIPBL | RAD21 | Co-fractionation | 22939629 | 9606 | 9606 | BIOGRID |
| NIPBL | MAU2 | Affinity Capture-Western | 16802858 | 9606 | 9606 | BIOGRID |
| NIPBL | MAU2 | Two-hybrid | 16802858 | 9606 | 9606 | BIOGRID |
| NIPBL | MAU2 | Co-fractionation | 26344197 | 9606 | 9606 | BIOGRID |
| NIPBL | MAU2 | Affinity Capture-Western | 28167679 | 9606 | 9606 | BIOGRID |
| NIPBL | CBX3 | Affinity Capture-Western | 28167679 | 9606 | 9606 | BIOGRID |
| NIPBL | STAG2 | Affinity Capture-Western | 31010829 | 9606 | 9606 | BIOGRID |
| NIPBL | STAG1 | Affinity Capture-Western | 31010829 | 9606 | 9606 | BIOGRID |
| NIPBL | WAPAL | Affinity Capture-Western | 31010829 | 9606 | 9606 | BIOGRID |
| NIPBL | MAU2 | Affinity Capture-Western | 31010829 | 9606 | 9606 | BIOGRID |
| NIPBL | NIPBL | Affinity Capture-MS | 31010829 | 9606 | 9606 | BIOGRID |
| NIPBL | MAU2 | Affinity Capture-MS | 31010829 | 9606 | 9606 | BIOGRID |
| NIPBL | PKP3 | Affinity Capture-MS | 31010829 | 9606 | 9606 | BIOGRID |
| NIPBL | HSPA8 | Affinity Capture-MS | 31010829 | 9606 | 9606 | BIOGRID |
| NIPBL | MED12 | Affinity Capture-MS | 31010829 | 9606 | 9606 | BIOGRID |
| NIPBL | MGA | Affinity Capture-MS | 31010829 | 9606 | 9606 | BIOGRID |
| NIPBL | LMNA | Affinity Capture-MS | 31010829 | 9606 | 9606 | BIOGRID |
| NIPBL | THRAP3 | Affinity Capture-MS | 31010829 | 9606 | 9606 | BIOGRID |
| NIPBL | PRMT5 | Affinity Capture-MS | 31010829 | 9606 | 9606 | BIOGRID |
| NIPBL | KPRP | Affinity Capture-MS | 31010829 | 9606 | 9606 | BIOGRID |
| NIPBL | SETX | Affinity Capture-MS | 31010829 | 9606 | 9606 | BIOGRID |
| NIPBL | MED13 | Affinity Capture-MS | 31010829 | 9606 | 9606 | BIOGRID |
| NIPBL | SNRNP200 | Affinity Capture-MS | 31010829 | 9606 | 9606 | BIOGRID |
| NIPBL | FLNA | Affinity Capture-MS | 31010829 | 9606 | 9606 | BIOGRID |
| NIPBL | AKAP8 | Affinity Capture-MS | 31010829 | 9606 | 9606 | BIOGRID |
| NIPBL | KHSRP | Affinity Capture-MS | 31010829 | 9606 | 9606 | BIOGRID |
| NIPBL | STK38 | Affinity Capture-MS | 31010829 | 9606 | 9606 | BIOGRID |
| NIPBL | RUVBL2 | Affinity Capture-MS | 31010829 | 9606 | 9606 | BIOGRID |
| NIPBL | RUVBL1 | Affinity Capture-MS | 31010829 | 9606 | 9606 | BIOGRID |
| NIPBL | HNRNPH1 | Affinity Capture-MS | 31010829 | 9606 | 9606 | BIOGRID |
| NIPBL | CKAP5 | Affinity Capture-MS | 31010829 | 9606 | 9606 | BIOGRID |
| NIPBL | ZDBF2 | Affinity Capture-MS | 31010829 | 9606 | 9606 | BIOGRID |
| NIPBL | EEF1A1 | Affinity Capture-MS | 31010829 | 9606 | 9606 | BIOGRID |
| NIPBL | SF3B1 | Affinity Capture-MS | 31010829 | 9606 | 9606 | BIOGRID |
| NIPBL | PRPF31 | Affinity Capture-MS | 31010829 | 9606 | 9606 | BIOGRID |
| NIPBL | STK38L | Affinity Capture-MS | 31010829 | 9606 | 9606 | BIOGRID |
| NIPBL | NONO | Affinity Capture-MS | 31010829 | 9606 | 9606 | BIOGRID |
| NIPBL | HNRNPK | Affinity Capture-MS | 31010829 | 9606 | 9606 | BIOGRID |
| NIPBL | DCAF7 | Affinity Capture-MS | 31010829 | 9606 | 9606 | BIOGRID |
| NIPBL | MED13L | Affinity Capture-MS | 31010829 | 9606 | 9606 | BIOGRID |
| NIPBL | TET2 | Affinity Capture-MS | 31010829 | 9606 | 9606 | BIOGRID |
| NIPBL | GAPDH | Affinity Capture-MS | 31010829 | 9606 | 9606 | BIOGRID |
| NIPBL | ANXA2 | Affinity Capture-MS | 31010829 | 9606 | 9606 | BIOGRID |
| NIPBL | RBM10 | Affinity Capture-MS | 31010829 | 9606 | 9606 | BIOGRID |
| NIPBL | SMC1A | Affinity Capture-MS | 31010829 | 9606 | 9606 | BIOGRID |
| NIPBL | TUBB3 | Affinity Capture-MS | 31010829 | 9606 | 9606 | BIOGRID |
| NIPBL | TUBB8 | Affinity Capture-MS | 31010829 | 9606 | 9606 | BIOGRID |
| NIPBL | NFATC1 | Affinity Capture-MS | 31010829 | 9606 | 9606 | BIOGRID |
| NIPBL | HSP90AA1 | Affinity Capture-MS | 31010829 | 9606 | 9606 | BIOGRID |
| NIPBL | C11orf84 | Affinity Capture-MS | 31010829 | 9606 | 9606 | BIOGRID |
| NIPBL | DDX17 | Affinity Capture-MS | 31010829 | 9606 | 9606 | BIOGRID |
| NIPBL | NFIL3 | Affinity Capture-MS | 31010829 | 9606 | 9606 | BIOGRID |
| NIPBL | SNX9 | Affinity Capture-MS | 31010829 | 9606 | 9606 | BIOGRID |
| NIPBL | POLDIP3 | Affinity Capture-MS | 31010829 | 9606 | 9606 | BIOGRID |
| NIPBL | AZGP1 | Affinity Capture-MS | 31010829 | 9606 | 9606 | BIOGRID |
| NIPBL | PCBP2 | Affinity Capture-MS | 31010829 | 9606 | 9606 | BIOGRID |
| NIPBL | SNRNP200 | Affinity Capture-Western | 31010829 | 9606 | 9606 | BIOGRID |
| NIPBL | HNRNPH1 | Affinity Capture-Western | 31010829 | 9606 | 9606 | BIOGRID |
| NIPBL | SF3B1 | Affinity Capture-Western | 31010829 | 9606 | 9606 | BIOGRID |
| NIPBL | SF3B3 | Affinity Capture-Western | 31010829 | 9606 | 9606 | BIOGRID |
| NIPBL | PRPF31 | Affinity Capture-Western | 31010829 | 9606 | 9606 | BIOGRID |
| NIPBL | ADAR | Affinity Capture-Western | 31010829 | 9606 | 9606 | BIOGRID |
| NIPBL | DDX47 | Affinity Capture-Western | 31010829 | 9606 | 9606 | BIOGRID |
Annotation of NIPBL
TCGA cancer survival map of NIPBL
Expression of NIPBL
Disease information of NIPBL