TcoF overview
| TcoF: | NUP98 | |
| GeneID: | 80336 | |
| Name: | Nuclear pore complex protein Nup98-Nup96 | |
| Ensembl: | ENSG00000110713 | |
| Species: | Human | |
| Class: | NA | |
| Family: | Others | |
| Disease: | 7 | |
| Go term: | 39 | |
| Pathway: | 26 | |
| Hallmark: | 3 | |
| Super Enhancer: |
-- |
|
| Enhancer: |
chr11:3641290-3642680 chr11:3768550-3769580 chr11:3421510-3422980 chr11:3423100-3423840 chr11:3613660-3615760 chr11:3625360-3627750 chr11:3647810-3647900 chr11:3742060-3744380 chr11:3744690-3745580 chr11:3801750-3803270 chr11:3845690-3846020 chr11:3846360-3846550 chr11:3795420-3797110 chr11:3609680-3610060 chr11:4186750-4188330 chr11:3406980-3409460 chr11:3730620-3732600 chr11:3765880-3767300 chr11:3844220-3844840 chr11:3844970-3845110 chr11:3886170-3888310 chr11:3888430-3889810 chr11:3924450-3925290 chr11:3969610-3971210 chr11:4116260-4118650 chr11:3914640-3916890 chr11:3805620-3807640 chr11:3892240-3892820 chr11:3899710-3900170 chr11:3900570-3902640 chr11:3912800-3914170 chr11:3898250-3899660 chr11:3847600-3848200 chr11:3580860-3581620 chr11:3940480-3942680 chr11:3959990-3962280 chr11:3982900-3984080 chr11:4016510-4018780 chr11:4065080-4067500 chr11:4412510-4414860 chr11:4078080-4080510 chr11:3648060-3648960 chr11:3923560-3924190 chr11:3928500-3929660 chr11:4211140-4212930 chr11:3948480-3950050 chr11:3836230-3838580 chr11:3936890-3937870 chr11:4155440-4156310 chr11:3882880-3883300 chr11:3997850-3998850 chr11:3937970-3939110 chr11:3939190-3940190 chr11:3973850-3976180 chr11:3994020-3994640 chr11:4039720-4040500 chr11:4040690-4042730 chr11:4080630-4082620 chr11:4145330-4147520 chr11:3845370-3845490 chr11:3477040-3477310 chr11:3971760-3973590 chr11:4086800-4087830 chr11:3722220-3723690 chr11:3921630-3921930 chr11:3922580-3922900 chr11:3922960-3923240 |
|
| Promoter: |
chr11:3692313-3819022 |
ChIP-seq based regulatory details of NUP98
| Sample ID | Experiment target | Biosample type | Biosample term name | GSM ID | Tissue type | Source |
|---|---|---|---|---|---|---|
| TcoF_00_30969 | NUP98 | cell line | hESC HUES6 | GSM1191931 | Embryo | ChIP-Atlas |
| TcoF_00_30970 | NUP98 | cell line | hESC derived neural cells | GSM1191933 | Embryo | ChIP-Atlas |
| TcoF_00_30971 | NUP98 | cell line | hESC derived neural cells | GSM1191935 | Embryo | ChIP-Atlas |
| TcoF_00_30972 | NUP98 | cell line | IMR-90 | GSM1191936 | Lung | ChIP-Atlas |
| TcoF_00_30973 | NUP98 | cell line | IMR-90 | GSM1191937 | Lung | ChIP-Atlas |
| TcoF_00_31273 | NUP98 | cell line | 293 | GSM1529676 | Kidney | ChIP-Atlas |
| TcoF_00_30901 | NUP98 | cell line | K-562 | GSM2635255 | Bone Marrow | ChIP-Atlas |
Downstream target genes of NUP98
Upstream regulatory details of NUP98
Protein-protein interaction of NUP98
| OFFICIAL_SYMBOL_A | OFFICIAL_SYMBOL_B | EXPERIMENTAL_SYSTEM | PUBMED_ID | ORGANISM_A_ID | ORGANISM_B_ID | SOURCE |
|---|---|---|---|---|---|---|
| NUP98 | MOB1A | Affinity Capture-MS | 17353931 | 9606 | 9606 | BIOGRID |
| NUP98 | PARP11 | Affinity Capture-MS | 17353931 | 9606 | 9606 | BIOGRID |
| NUP98 | QRICH2 | Affinity Capture-MS | 17353931 | 9606 | 9606 | BIOGRID |
| NUP98 | NUP88 | Reconstituted Complex | 12589057 | 9606 | 9606 | BIOGRID |
| NUP98 | NUP88 | Affinity Capture-Western | 12589057 | 9606 | 9606 | BIOGRID |
| NUP98 | CREBBP | Affinity Capture-Western | 9858599 | 9606 | 9606 | BIOGRID |
| NUP98 | EP300 | Affinity Capture-Western | 9858599 | 9606 | 9606 | BIOGRID |
| NUP98 | KPNB1 | Reconstituted Complex | 9275187 | 9606 | 9606 | BIOGRID |
| NUP98 | RAE1 | Affinity Capture-Western | 10209021 | 9606 | 9606 | BIOGRID |
| NUP98 | RAE1 | Reconstituted Complex | 10209021 | 9606 | 9606 | BIOGRID |
| NUP98 | TNPO2 | Reconstituted Complex | 10875935 | 9606 | 9606 | BIOGRID |
| NUP98 | TPR | Reconstituted Complex | 11248057 | 9606 | 9606 | BIOGRID |
| NUP98 | PTTG1 | Affinity Capture-Western | 16479161 | 9606 | 9606 | BIOGRID |
| NUP98 | RAE1 | Affinity Capture-Western | 21467841 | 9606 | 9606 | BIOGRID |
| NUP98 | RAE1 | Reconstituted Complex | 21467841 | 9606 | 9606 | BIOGRID |
| NUP98 | HNRNPUL1 | Affinity Capture-Western | 19745842 | 9606 | 9606 | BIOGRID |
| NUP98 | ARFGEF2 | Co-fractionation | 22863883 | 9606 | 9606 | BIOGRID |
| NUP98 | CDC73 | Co-fractionation | 22863883 | 9606 | 9606 | BIOGRID |
| NUP98 | PAF1 | Co-fractionation | 22863883 | 9606 | 9606 | BIOGRID |
| NUP98 | NUP107 | Co-fractionation | 26344197 | 9606 | 9606 | BIOGRID |
| NUP98 | TNPO1 | Co-fractionation | 26344197 | 9606 | 9606 | BIOGRID |
| NUP98 | MAD2L1 | Affinity Capture-Western | 27097363 | 9606 | 9606 | BIOGRID |
| NUP98 | PIN1 | Affinity Capture-Western | 27097363 | 9606 | 9606 | BIOGRID |
| NUP98 | NUP155 | Reconstituted Complex | 29899397 | 9606 | 9606 | BIOGRID |
| NUP98 | TTC9 | Proximity Label-MS | 30021884 | 9606 | 9606 | BIOGRID |
| NUP98 | HIST1H2BH | Proximity Label-MS | 30021884 | 9606 | 9606 | BIOGRID |
| NUP98 | HIST3H3 | Proximity Label-MS | 30021884 | 9606 | 9606 | BIOGRID |
| NUP98 | NUP37 | Affinity Capture-MS | 24981860 | 9606 | 9606 | BIOGRID |
| NUP98 | NUP43 | Affinity Capture-MS | 24981860 | 9606 | 9606 | BIOGRID |
| NUP98 | NUP133 | Affinity Capture-MS | 24981860 | 9606 | 9606 | BIOGRID |
| NUP98 | Rae1 | Reconstituted Complex | 11352911 | 9606 | 10090 | BIOGRID |
Annotation of NUP98
TCGA cancer survival map of NUP98
Expression of NUP98
Disease information of NUP98