TcoF overview
TcoF: PCGF1
GeneID: 5252
Name: Polycomb group RING finger protein 1
Ensembl: ENSG00000115289
Species: Human
Class: class 2
Family: PCGF
Disease: 0
Go term: 12
Pathway: --
Hallmark: --
Super Enhancer:

chr2:74666090-74693074 chr2:74679073-74686705 chr2:74667526-74693017 chr2:74666012-74693587 chr2:74666467-74693624 chr2:74777955-74784088 chr2:74724583-74744688 chr2:74732155-74743724 chr2:74731026-74743366 chr2:74725269-74744466 chr2:74725435-74743416 chr2:74731547-74743300 chr2:74731892-74743504 chr2:74725206-74745550 chr2:74732337-74743765 chr2:74732531-74743705 chr2:74732269-74743156 chr2:74732211-74743208 chr2:74732495-74743055 chr2:74732610-74743344

Enhancer:

chr2:74618370-74618600 chr2:74691850-74692020 chr2:74699380-74699480 chr2:74699600-74699690 chr2:74776300-74776490 chr2:74787420-74789340 chr2:75144320-75145720 chr2:74618740-74618920 chr2:74653700-74654290 chr2:74654400-74654550 chr2:74667100-74667470 chr2:74685800-74686760 chr2:74881650-74883660 chr2:74715360-74717150 chr2:74657160-74657370 chr2:74743000-74743090 chr2:74642750-74642830 chr2:74643060-74643130 chr2:74643370-74643750 chr2:74742330-74742750 chr2:74438990-74441200 chr2:74555310-74556140 chr2:74654720-74655390 chr2:74454260-74454640 chr2:74454690-74454930 chr2:74458440-74459590 chr2:74587430-74588000 chr2:74690510-74691620 chr2:74403510-74405790 chr2:74600070-74601440 chr2:74606860-74607130 chr2:74686870-74686990 chr2:74652880-74652980 chr2:74656070-74656950 chr2:74657500-74657590 chr2:74697540-74699080 chr2:74718800-74719130 chr2:74794240-74796460 chr2:74792820-74794230 chr2:74789550-74791000 chr2:74663880-74665120 chr2:74800570-74802340 chr2:75075610-75077430 chr2:75077780-75079580 chr2:74846710-74847850 chr2:74380040-74380750 chr2:74687180-74687340 chr2:74486770-74489260 chr2:74369490-74370110 chr2:74433020-74434830 chr2:74475610-74477460 chr2:74651110-74652000 chr2:74652360-74652540 chr2:74652620-74652690 chr2:74655520-74655750 chr2:74655860-74655970 chr2:74657650-74657740 chr2:74657800-74659590 chr2:74719180-74719260 chr2:74802710-74803580 chr2:75074320-75075090 chr2:75094910-75096080 chr2:75113800-75115020 chr2:75115190-75116370 chr2:75120480-75122700 chr2:75186020-75186460 chr2:74919220-74920410 chr2:74966810-74969260 chr2:75047220-75049090 chr2:75248450-75249300 chr2:75291700-75293780 chr2:74356740-74358190 chr2:74632100-74634410 chr2:74650660-74650980 chr2:74652100-74652200 chr2:74583200-74584730 chr2:74428610-74429980 chr2:74436570-74437060 chr2:74437180-74437500 chr2:74431090-74432830 chr2:74086490-74087170 chr2:74146780-74148950 chr2:74289970-74291890 chr2:74481830-74482900 chr2:74747290-74748220 chr2:74867460-74869370 chr2:75068900-75069170 chr2:75082420-75084440 chr2:75091840-75094060 chr2:75094620-75094760 chr2:75124790-75125460 chr2:75162800-75164990 chr2:74797940-74799120 chr2:74452120-74454080 chr2:74531810-74532420 chr2:74559290-74561150 chr2:75043170-75043850 chr2:75044120-75044900 chr2:75150380-75150810 chr2:75004250-75006450 chr2:74447850-74448560 chr2:74823720-74825470 chr2:74961760-74963320 chr2:74450080-74451960 chr2:74688020-74688180 chr2:74761980-74762410 chr2:74762580-74762710 chr2:74762880-74763120 chr2:74763280-74763410 chr2:74763600-74763830 chr2:74448630-74449990

Promoter:

chr2:74732170-74734822

 ChIP-seq based regulatory details of PCGF1
Sample ID Experiment target Biosample type Biosample term name GSM ID Tissue type Source
TcoF_00_20689 PCGF1 cell line K562 GSM1319304 Bone Marrow Cistrome
TcoF_00_21208 PCGF1 cell line None GSM2805869 None Cistrome
TcoF_00_40621 PCGF1 cell line WA01 GSM2805869 None ReMap
TcoF_00_20466 PCGF1 cell line HEK293T GSM855009 Embryonic Kidney Cistrome
 Downstream target genes of PCGF1
 Protein-protein interaction of PCGF1
OFFICIAL_SYMBOL_A OFFICIAL_SYMBOL_B EXPERIMENTAL_SYSTEM PUBMED_ID ORGANISM_A_ID ORGANISM_B_ID SOURCE
PCGF1 BCOR Affinity Capture-MS 16943429 9606 9606 BIOGRID
PCGF1 KDM2B Affinity Capture-MS 16943429 9606 9606 BIOGRID
PCGF1 HSPA4 Affinity Capture-MS 16943429 9606 9606 BIOGRID
PCGF1 RING1 Affinity Capture-MS 16943429 9606 9606 BIOGRID
PCGF1 RNF2 Affinity Capture-MS 16943429 9606 9606 BIOGRID
PCGF1 RYBP Affinity Capture-MS 16943429 9606 9606 BIOGRID
PCGF1 SKP1 Affinity Capture-MS 16943429 9606 9606 BIOGRID
PCGF1 BCOR Reconstituted Complex 16943429 9606 9606 BIOGRID
PCGF1 RING1 Reconstituted Complex 16943429 9606 9606 BIOGRID
PCGF1 RNF2 Reconstituted Complex 16943429 9606 9606 BIOGRID
PCGF1 RNF2 Affinity Capture-MS 22325352 9606 9606 BIOGRID
PCGF1 RING1 Affinity Capture-MS 22325352 9606 9606 BIOGRID
PCGF1 RYBP Affinity Capture-MS 22325352 9606 9606 BIOGRID
PCGF1 YAF2 Affinity Capture-MS 22325352 9606 9606 BIOGRID
PCGF1 SKP1 Affinity Capture-MS 22325352 9606 9606 BIOGRID
PCGF1 BCOR Affinity Capture-MS 22325352 9606 9606 BIOGRID
PCGF1 BCORL1 Affinity Capture-MS 22325352 9606 9606 BIOGRID
PCGF1 KDM2B Affinity Capture-MS 22325352 9606 9606 BIOGRID
PCGF1 USP7 Affinity Capture-MS 22325352 9606 9606 BIOGRID
PCGF1 RNF2 Affinity Capture-Western 22325352 9606 9606 BIOGRID
PCGF1 RYBP Affinity Capture-Western 22325352 9606 9606 BIOGRID
PCGF1 KDM2B Affinity Capture-Western 22325352 9606 9606 BIOGRID
PCGF1 BCOR Two-hybrid 23523425 9606 9606 BIOGRID
PCGF1 BCORL1 Two-hybrid 23523425 9606 9606 BIOGRID
PCGF1 BCOR Co-crystal Structure 23523425 9606 9606 BIOGRID
PCGF1 RING1 Two-hybrid 22493164 9606 9606 BIOGRID
PCGF1 RNF2 Two-hybrid 22493164 9606 9606 BIOGRID
PCGF1 PCGF5 Two-hybrid 22493164 9606 9606 BIOGRID
PCGF1 TRIM55 Two-hybrid 22493164 9606 9606 BIOGRID
PCGF1 RNF125 Two-hybrid 22493164 9606 9606 BIOGRID
PCGF1 RNF2 Reconstituted Complex 26151332 9606 9606 BIOGRID
PCGF1 PCGF1 Biochemical Activity 26151332 9606 9606 BIOGRID
PCGF1 UBE2D3 Reconstituted Complex 26151332 9606 9606 BIOGRID
PCGF1 RYBP Affinity Capture-MS 26687479 9606 9606 BIOGRID
PCGF1 IBTK Affinity Capture-MS 26687479 9606 9606 BIOGRID
PCGF1 LETMD1 Affinity Capture-MS 26687479 9606 9606 BIOGRID
PCGF1 DIDO1 Affinity Capture-MS 26687479 9606 9606 BIOGRID
PCGF1 PCGF1 Affinity Capture-MS 26687479 9606 9606 BIOGRID
PCGF1 PCMTD2 Affinity Capture-MS 26687479 9606 9606 BIOGRID
PCGF1 NSF Affinity Capture-MS 26687479 9606 9606 BIOGRID
PCGF1 ERCC8 Affinity Capture-MS 26687479 9606 9606 BIOGRID
PCGF1 NAA50 Affinity Capture-MS 26687479 9606 9606 BIOGRID
PCGF1 USP42 Affinity Capture-MS 26687479 9606 9606 BIOGRID
PCGF1 SASS6 Affinity Capture-MS 26687479 9606 9606 BIOGRID
PCGF1 FABP5 Affinity Capture-MS 26687479 9606 9606 BIOGRID
PCGF1 ERBB3 Affinity Capture-MS 26687479 9606 9606 BIOGRID
PCGF1 GPATCH8 Affinity Capture-MS 26687479 9606 9606 BIOGRID
PCGF1 DPPA4 Affinity Capture-MS 26687479 9606 9606 BIOGRID
PCGF1 ZNF157 Affinity Capture-MS 26687479 9606 9606 BIOGRID
PCGF1 RNF2 Affinity Capture-MS 26687479 9606 9606 BIOGRID
PCGF1 ATG13 Affinity Capture-MS 26687479 9606 9606 BIOGRID
PCGF1 USP9X Affinity Capture-MS 26687479 9606 9606 BIOGRID
PCGF1 DPPA2 Affinity Capture-MS 26687479 9606 9606 BIOGRID
PCGF1 TXN Affinity Capture-MS 26687479 9606 9606 BIOGRID
PCGF1 SPECC1 Affinity Capture-MS 26687479 9606 9606 BIOGRID
PCGF1 SIPA1L2 Affinity Capture-MS 26687479 9606 9606 BIOGRID
PCGF1 SMARCC2 Affinity Capture-MS 26687479 9606 9606 BIOGRID
PCGF1 TOR3A Affinity Capture-MS 26687479 9606 9606 BIOGRID
PCGF1 CLIP1 Affinity Capture-MS 26687479 9606 9606 BIOGRID
PCGF1 ATG101 Affinity Capture-MS 26687479 9606 9606 BIOGRID
PCGF1 PGAM1 Affinity Capture-MS 26687479 9606 9606 BIOGRID
PCGF1 BCOR Affinity Capture-MS 26687479 9606 9606 BIOGRID
PCGF1 HMGA2 Affinity Capture-MS 26687479 9606 9606 BIOGRID
PCGF1 ING4 Affinity Capture-MS 26687479 9606 9606 BIOGRID
PCGF1 ACACB Affinity Capture-MS 26687479 9606 9606 BIOGRID
PCGF1 MRE11A Affinity Capture-MS 26687479 9606 9606 BIOGRID
PCGF1 KDM2B Affinity Capture-MS 26687479 9606 9606 BIOGRID
PCGF1 TCEB1 Affinity Capture-MS 26687479 9606 9606 BIOGRID
PCGF1 PHC2 Affinity Capture-MS 26687479 9606 9606 BIOGRID
PCGF1 HMGA1 Affinity Capture-MS 26687479 9606 9606 BIOGRID
PCGF1 SKP1 Affinity Capture-MS 26687479 9606 9606 BIOGRID
PCGF1 CHMP4B Affinity Capture-MS 26687479 9606 9606 BIOGRID
PCGF1 CCAR1 Affinity Capture-MS 26687479 9606 9606 BIOGRID
PCGF1 PRAM1 Affinity Capture-MS 26687479 9606 9606 BIOGRID
PCGF1 ELP3 Affinity Capture-MS 26687479 9606 9606 BIOGRID
PCGF1 SUZ12 Affinity Capture-MS 26687479 9606 9606 BIOGRID
PCGF1 PATZ1 Affinity Capture-MS 26687479 9606 9606 BIOGRID
PCGF1 HRG Affinity Capture-MS 26687479 9606 9606 BIOGRID
PCGF1 DDB1 Affinity Capture-MS 26687479 9606 9606 BIOGRID
PCGF1 RING1 Affinity Capture-MS 26687479 9606 9606 BIOGRID
PCGF1 CDK12 Affinity Capture-MS 26687479 9606 9606 BIOGRID
PCGF1 RAB13 Affinity Capture-MS 26687479 9606 9606 BIOGRID
PCGF1 ZGPAT Affinity Capture-MS 26687479 9606 9606 BIOGRID
PCGF1 PCMT1 Affinity Capture-MS 26687479 9606 9606 BIOGRID
PCGF1 SATB2 Affinity Capture-MS 26687479 9606 9606 BIOGRID
PCGF1 POLE2 Affinity Capture-MS 26687479 9606 9606 BIOGRID
PCGF1 TP53BP1 Affinity Capture-MS 26687479 9606 9606 BIOGRID
PCGF1 UPF1 Affinity Capture-MS 26687479 9606 9606 BIOGRID
PCGF1 EBF1 Affinity Capture-MS 26687479 9606 9606 BIOGRID
PCGF1 USP7 Affinity Capture-MS 26687479 9606 9606 BIOGRID
PCGF1 PDCD7 Affinity Capture-MS 26687479 9606 9606 BIOGRID
PCGF1 SSBP3 Affinity Capture-MS 26687479 9606 9606 BIOGRID
PCGF1 PPP6C Affinity Capture-MS 26687479 9606 9606 BIOGRID
PCGF1 ERC1 Affinity Capture-MS 26687479 9606 9606 BIOGRID
PCGF1 PQBP1 Affinity Capture-MS 26687479 9606 9606 BIOGRID
PCGF1 SAP18 Affinity Capture-MS 26687479 9606 9606 BIOGRID
PCGF1 PPP2R3A Affinity Capture-MS 26687479 9606 9606 BIOGRID
PCGF1 TIAL1 Affinity Capture-MS 26687479 9606 9606 BIOGRID
PCGF1 TCERG1 Affinity Capture-MS 26687479 9606 9606 BIOGRID
PCGF1 USP34 Affinity Capture-MS 26687479 9606 9606 BIOGRID
PCGF1 MDC1 Affinity Capture-MS 26687479 9606 9606 BIOGRID
PCGF1 AKAP9 Affinity Capture-MS 26687479 9606 9606 BIOGRID
PCGF1 CDAN1 Affinity Capture-MS 26687479 9606 9606 BIOGRID
PCGF1 CRBN Affinity Capture-MS 26687479 9606 9606 BIOGRID
PCGF1 TUBGCP2 Affinity Capture-MS 26687479 9606 9606 BIOGRID
PCGF1 SRRT Affinity Capture-MS 26687479 9606 9606 BIOGRID
PCGF1 ITPR3 Affinity Capture-MS 26687479 9606 9606 BIOGRID
PCGF1 ARID1B Affinity Capture-MS 26687479 9606 9606 BIOGRID
PCGF1 BCORL1 Affinity Capture-MS 26687479 9606 9606 BIOGRID
PCGF1 CARD14 Affinity Capture-MS 26687479 9606 9606 BIOGRID
PCGF1 HIST1H2AI Affinity Capture-MS 26687479 9606 9606 BIOGRID
PCGF1 HIST1H2AK Affinity Capture-MS 26687479 9606 9606 BIOGRID
PCGF1 HIST1H2AL Affinity Capture-MS 26687479 9606 9606 BIOGRID
PCGF1 HIST1H2AM Affinity Capture-MS 26687479 9606 9606 BIOGRID
PCGF1 HIST1H2AG Affinity Capture-MS 26687479 9606 9606 BIOGRID
PCGF1 BCOR Affinity Capture-Western 26687479 9606 9606 BIOGRID
PCGF1 RYBP Affinity Capture-Western 26687479 9606 9606 BIOGRID
PCGF1 RNF2 Affinity Capture-Western 26687479 9606 9606 BIOGRID
PCGF1 DPPA4 Affinity Capture-Western 26687479 9606 9606 BIOGRID
PCGF1 KDM2B Co-purification 26687479 9606 9606 BIOGRID
PCGF1 BCOR Co-purification 26687479 9606 9606 BIOGRID
PCGF1 DPPA4 Co-purification 26687479 9606 9606 BIOGRID
PCGF1 NANOG Co-purification 26687479 9606 9606 BIOGRID
PCGF1 SKP1 Co-purification 26687479 9606 9606 BIOGRID
PCGF1 RING1 Co-purification 26687479 9606 9606 BIOGRID
PCGF1 BMI1 Co-purification 26687479 9606 9606 BIOGRID
PCGF1 CBX8 Co-purification 26687479 9606 9606 BIOGRID
PCGF1 EZH2 Co-purification 26687479 9606 9606 BIOGRID
PCGF1 BCOR Affinity Capture-MS 27705803 9606 9606 BIOGRID
PCGF1 BCORL1 Affinity Capture-MS 27705803 9606 9606 BIOGRID
PCGF1 CBX8 Affinity Capture-MS 27705803 9606 9606 BIOGRID
PCGF1 HSPD1 Affinity Capture-MS 27705803 9606 9606 BIOGRID
PCGF1 KDM2B Affinity Capture-MS 27705803 9606 9606 BIOGRID
PCGF1 MORC4 Affinity Capture-MS 27705803 9606 9606 BIOGRID
PCGF1 RING1 Affinity Capture-MS 27705803 9606 9606 BIOGRID
PCGF1 RNF2 Affinity Capture-MS 27705803 9606 9606 BIOGRID
PCGF1 RYBP Affinity Capture-MS 27705803 9606 9606 BIOGRID
PCGF1 SCML1 Affinity Capture-MS 27705803 9606 9606 BIOGRID
PCGF1 SKP1 Affinity Capture-MS 27705803 9606 9606 BIOGRID
PCGF1 USP7 Affinity Capture-MS 27705803 9606 9606 BIOGRID
PCGF1 YAF2 Affinity Capture-MS 27705803 9606 9606 BIOGRID
PCGF1 KDM2B Affinity Capture-Western 27505670 9606 9606 BIOGRID
PCGF1 CBX8 Affinity Capture-Western 27505670 9606 9606 BIOGRID
PCGF1 RNF2 Affinity Capture-Western 27505670 9606 9606 BIOGRID
PCGF1 BCOR Affinity Capture-Western 27505670 9606 9606 BIOGRID
PCGF1 BCOR Affinity Capture-MS 27505670 9606 9606 BIOGRID
PCGF1 KDM2B Affinity Capture-MS 27505670 9606 9606 BIOGRID
PCGF1 BCORL1 Affinity Capture-MS 27505670 9606 9606 BIOGRID
PCGF1 SKP1 Affinity Capture-MS 27505670 9606 9606 BIOGRID
PCGF1 RNF2 Affinity Capture-MS 27505670 9606 9606 BIOGRID
PCGF1 RYBP Affinity Capture-MS 27505670 9606 9606 BIOGRID
PCGF1 RING1 Affinity Capture-MS 27505670 9606 9606 BIOGRID
PCGF1 HNRNPF Affinity Capture-MS 27505670 9606 9606 BIOGRID
PCGF1 CBX4 Affinity Capture-MS 27505670 9606 9606 BIOGRID
PCGF1 YAF2 Affinity Capture-MS 27505670 9606 9606 BIOGRID
PCGF1 QSER1 Affinity Capture-MS 27505670 9606 9606 BIOGRID
PCGF1 MORC4 Affinity Capture-MS 27505670 9606 9606 BIOGRID
PCGF1 YLPM1 Affinity Capture-MS 27505670 9606 9606 BIOGRID
PCGF1 OTUD4 Affinity Capture-MS 27505670 9606 9606 BIOGRID
PCGF1 NOP56 Affinity Capture-MS 27505670 9606 9606 BIOGRID
PCGF1 MLLT3 Affinity Capture-MS 27505670 9606 9606 BIOGRID
PCGF1 ZC3H18 Affinity Capture-MS 27505670 9606 9606 BIOGRID
PCGF1 ABCB7 Affinity Capture-MS 27505670 9606 9606 BIOGRID
PCGF1 CBX8 Affinity Capture-MS 27505670 9606 9606 BIOGRID
PCGF1 ZNF148 Affinity Capture-MS 27505670 9606 9606 BIOGRID
PCGF1 MLLT1 Affinity Capture-MS 27505670 9606 9606 BIOGRID
PCGF1 CTCF Affinity Capture-MS 27505670 9606 9606 BIOGRID
PCGF1 SETD2 Affinity Capture-MS 27505670 9606 9606 BIOGRID
PCGF1 CYFIP1 Affinity Capture-MS 27505670 9606 9606 BIOGRID
PCGF1 ZNF326 Affinity Capture-MS 27505670 9606 9606 BIOGRID
PCGF1 BCOR Two-hybrid 27107012 9606 9606 BIOGRID
PCGF1 MUC7 Two-hybrid 27107012 9606 9606 BIOGRID
PCGF1 RNF2 Affinity Capture-Western 29985131 9606 9606 BIOGRID
PCGF1 KDM2B Affinity Capture-Western 29985131 9606 9606 BIOGRID
PCGF1 H2AFX Affinity Capture-Western 29985131 9606 9606 BIOGRID
PCGF1 H2AFX Co-localization 29985131 9606 9606 BIOGRID
PCGF1 RNF2 Two-hybrid 32296183 9606 9606 BIOGRID
PCGF1 FCHO1 Two-hybrid 32296183 9606 9606 BIOGRID
PCGF1 HIST1H2AB Biochemical Activity 29386386 9606 9606 BIOGRID
PCGF1 PCGF5 Affinity Capture-MS 24981860 9606 9606 BIOGRID
PCGF1 BCOR Affinity Capture-MS 24981860 9606 9606 BIOGRID
PCGF1 BMI1 Affinity Capture-MS 24981860 9606 9606 BIOGRID
PCGF1 PCGF3 Affinity Capture-MS 24981860 9606 9606 BIOGRID
PCGF1 PCGF6 Affinity Capture-MS 24981860 9606 9606 BIOGRID
PCGF1 YAF2 Affinity Capture-MS 24981860 9606 9606 BIOGRID
PCGF1 RNF2 Affinity Capture-MS 24981860 9606 9606 BIOGRID
PCGF1 PHC1 Affinity Capture-MS 24981860 9606 9606 BIOGRID
PCGF1 CSNK2A2 Affinity Capture-MS 24981860 9606 9606 BIOGRID
PCGF1 PHC3 Affinity Capture-MS 24981860 9606 9606 BIOGRID
PCGF1 CBX3 Affinity Capture-MS 24981860 9606 9606 BIOGRID
PCGF1 PHC2 Affinity Capture-MS 24981860 9606 9606 BIOGRID
PCGF1 MGA Affinity Capture-MS 24981860 9606 9606 BIOGRID
PCGF1 CBX6 Affinity Capture-MS 24981860 9606 9606 BIOGRID
PCGF1 CBX4 Affinity Capture-MS 24981860 9606 9606 BIOGRID
PCGF1 L3MBTL2 Affinity Capture-MS 24981860 9606 9606 BIOGRID
PCGF1 CSNK2B Affinity Capture-MS 24981860 9606 9606 BIOGRID
PCGF1 DCAF7 Affinity Capture-MS 24981860 9606 9606 BIOGRID
PCGF1 CSNK2A1 Affinity Capture-MS 24981860 9606 9606 BIOGRID
PCGF1 H2AFX Affinity Capture-MS 24981860 9606 9606 BIOGRID
PCGF1 SCMH1 Affinity Capture-MS 24981860 9606 9606 BIOGRID
 Annotation of PCGF1
 TCGA cancer survival map of PCGF1


Calculate the hazards ratio based on Cox PH Model.
Add the 95% CI as dotted line.
Reset Add The plot axis-x order will follow the list.


Calculate the hazards ratio based on Cox PH Model.
We use log2(TPM + 1) for log-scale.
All Add
Reset The plot is based on the datasets of list.


 Disease information of  PCGF1