TcoF overview
TcoF: PDLIM1
GeneID: 51230
Name: PDZ and LIM domain protein 1
Ensembl: ENSG00000107438
Species: Human
Class: NA
Family: Others
Disease: 0
Go term: 23
Pathway: 1
Hallmark: --
Super Enhancer:

chr10:97083808-97101526 chr10:97065603-97076085 chr10:97086758-97141202 chr10:97064120-97094597 chr10:97052029-97056525 chr10:97085799-97102303 chr10:97053055-97074713 chr10:97018892-97029488 chr10:97031032-97046010 chr10:96989100-97039914 chr10:97006528-97069496 chr10:97005579-97069966 chr10:97006193-97070021 chr10:97005682-97069533 chr10:97005865-97051708 chr10:97006122-97069604 chr10:96990256-97070577 chr10:97025498-97070672 chr10:97006337-97069717 chr10:96997202-97070034 chr10:97019728-97028619 chr10:97022720-97026979 chr10:97013146-97026003 chr10:97006674-97055985 chr10:96989104-97069261 chr10:97020017-97034263 chr10:97019713-97039711 chr10:97019636-97038273 chr10:97007095-97036615 chr10:96989123-97069315 chr10:97006092-97051629 chr10:97048913-97058328 chr10:97019671-97029424 chr10:97019872-97055174 chr10:97005927-97039934 chr10:97023545-97055260 chr10:97021005-97063484 chr10:96996041-97070507 chr10:97022867-97064437 chr10:97022297-97052177 chr10:97006063-97040147 chr10:97006142-97040259 chr10:97024653-97036875 chr10:97019277-97069405 chr10:97019974-97050640 chr10:97006182-97068935 chr10:97026031-97070622 chr10:97044368-97071056 chr10:97048697-97070997 chr10:97020533-97034077 chr10:97025687-97055828 chr10:97019021-97052161 chr10:97019173-97051743 chr10:97005757-97052337 chr10:97019078-97052360 chr10:97005893-97052365 chr10:97019230-97051931 chr10:97029556-97042875 chr10:97019434-97052066 chr10:97006184-97052064 chr10:97019289-97052079 chr10:96987763-97051889 chr10:96988222-97040020 chr10:96974101-97037671 chr10:96987875-97055476 chr10:97034567-97075777 chr10:96973800-97055853 chr10:96974127-97048170 chr10:96977107-97040730 chr10:97006102-97184424 chr10:97006164-97096861 chr10:97006155-97073099 chr10:97005600-97133587 chr10:97019483-97121467 chr10:96968564-97050551 chr10:96968460-97050626 chr10:96968807-97075533 chr10:96987857-97040482 chr10:96987882-97040192 chr10:96973262-97055899 chr10:96968698-97039329 chr10:96973641-97051838 chr10:96987155-97040207 chr10:96984149-97038725 chr10:96988086-97039088 chr10:96987876-97070507 chr10:96980025-97070891 chr10:96988201-97041390 chr10:97034304-97075226 chr10:96987879-97068706 chr10:97006392-97080238 chr10:97023141-97075823 chr10:96987668-97040196 chr10:96988010-97039086 chr10:96988223-97069727 chr10:96987232-97034227 chr10:97045817-97073713 chr10:97047309-97073983 chr10:97047646-97073294 chr10:97011794-97074410 chr10:97005128-97096849 chr10:97005620-97086728 chr10:96987484-97055908 chr10:96970518-97069572 chr10:97048732-97075691 chr10:97047992-97074769 chr10:96973851-97051679

Enhancer:

chr10:96839780-96841730 chr10:96971790-96972610 chr10:96972700-96974600 chr10:96591480-96593010 chr10:96640880-96641540 chr10:96642940-96643320 chr10:96688640-96689300 chr10:96910530-96911010 chr10:97081780-97082220 chr10:97156430-97156970 chr10:97163540-97165870 chr10:97166040-97167580 chr10:97167830-97168300 chr10:97168510-97170080 chr10:97174620-97176920 chr10:97276440-97277990 chr10:97278150-97280140 chr10:97170090-97170380 chr10:97115340-97116220 chr10:96954060-96954220 chr10:96954440-96956810 chr10:97032790-97035280 chr10:97067270-97069720 chr10:97069860-97071070 chr10:97272190-97274290 chr10:97274610-97274920 chr10:97275340-97276110 chr10:97577650-97580020 chr10:97178840-97180660 chr10:96970900-96971630 chr10:96974730-96976250 chr10:96979730-96982080 chr10:96995280-96997200 chr10:97111130-97111840 chr10:97147240-97147740 chr10:97147850-97149330 chr10:97152310-97154360 chr10:97170540-97172100 chr10:97181830-97181940 chr10:97181970-97184060 chr10:96661110-96663270 chr10:96663780-96665600 chr10:97063020-97065120 chr10:97106380-97107270 chr10:97388250-97389600 chr10:97405460-97406390 chr10:97406960-97409160 chr10:97434760-97436090 chr10:96814260-96814700 chr10:97446280-97446800 chr10:96931370-96931540 chr10:96932510-96933030 chr10:97040200-97042530 chr10:97079590-97080070 chr10:97097150-97097920 chr10:97137580-97138480 chr10:97143620-97143740 chr10:97154430-97154550 chr10:97155270-97156420 chr10:97192330-97192700 chr10:97192810-97194370 chr10:97197310-97198960 chr10:97199010-97200620 chr10:97200680-97200880 chr10:97157040-97158770 chr10:97209900-97212280 chr10:97283850-97285520 chr10:97285650-97286580 chr10:97453230-97453400 chr10:97667820-97670240 chr10:96757290-96759090 chr10:96985150-96987400 chr10:96987830-96988400 chr10:97088770-97090000 chr10:97109320-97110960 chr10:97184630-97186910 chr10:97229000-97230630 chr10:97233680-97235300 chr10:97235400-97236840 chr10:97267710-97269710 chr10:97288690-97289190 chr10:97306740-97308100 chr10:97312180-97313020 chr10:97488860-97490300 chr10:97501220-97503490 chr10:97090860-97092040 chr10:97303190-97305280 chr10:97647840-97650190 chr10:97085580-97086680 chr10:97086760-97088070 chr10:97212550-97213030

Promoter:

chr10:96997329-97050769

 ChIP-seq based regulatory details of PDLIM1
Sample ID Experiment target Biosample type Biosample term name GSM ID Tissue type Source
 Downstream target genes of PDLIM1
 Protein-protein interaction of PDLIM1
OFFICIAL_SYMBOL_A OFFICIAL_SYMBOL_B EXPERIMENTAL_SYSTEM PUBMED_ID ORGANISM_A_ID ORGANISM_B_ID SOURCE
PDLIM1 STK35 Reconstituted Complex 11973348 9606 9606 BIOGRID
PDLIM1 ACTN1 Affinity Capture-Western 10753915 9606 9606 BIOGRID
PDLIM1 ACTN1 Reconstituted Complex 10753915 9606 9606 BIOGRID
PDLIM1 ACTN4 Reconstituted Complex 10753915 9606 9606 BIOGRID
PDLIM1 RLIM Affinity Capture-Western 19117995 9606 9606 BIOGRID
PDLIM1 PDLIM1 Affinity Capture-Western 19117995 9606 9606 BIOGRID
PDLIM1 ESR1 Affinity Capture-Western 19117995 9606 9606 BIOGRID
PDLIM1 PNPT1 Co-fractionation 22939629 9606 9606 BIOGRID
PDLIM1 ARIH2 Co-fractionation 22863883 9606 9606 BIOGRID
PDLIM1 HK2 Co-fractionation 22863883 9606 9606 BIOGRID
PDLIM1 NUBP1 Co-fractionation 22863883 9606 9606 BIOGRID
PDLIM1 ACTN4 Affinity Capture-MS 26186194 9606 9606 BIOGRID
PDLIM1 ACTN1 Affinity Capture-MS 26186194 9606 9606 BIOGRID
PDLIM1 ACTN2 Affinity Capture-MS 26186194 9606 9606 BIOGRID
PDLIM1 ACTN3 Affinity Capture-MS 26186194 9606 9606 BIOGRID
PDLIM1 NUDT12 Affinity Capture-MS 26186194 9606 9606 BIOGRID
PDLIM1 RANGRF Affinity Capture-MS 26186194 9606 9606 BIOGRID
PDLIM1 STMN1 Co-fractionation 26344197 9606 9606 BIOGRID
PDLIM1 ACTN3 Affinity Capture-MS 28514442 9606 9606 BIOGRID
PDLIM1 NUDT12 Affinity Capture-MS 28514442 9606 9606 BIOGRID
PDLIM1 ACTN1 Affinity Capture-MS 28514442 9606 9606 BIOGRID
PDLIM1 ACTN2 Affinity Capture-MS 28514442 9606 9606 BIOGRID
PDLIM1 ACTN4 Affinity Capture-MS 28514442 9606 9606 BIOGRID
PDLIM1 GORASP2 Affinity Capture-MS 27173435 9606 9606 BIOGRID
PDLIM1 GFAP Two-hybrid 29892012 9606 9606 BIOGRID
PDLIM1 ACTN4 Two-hybrid 29892012 9606 9606 BIOGRID
PDLIM1 NGFR Affinity Capture-Western 26119933 9606 9606 BIOGRID
PDLIM1 HNRNPD Proximity Label-MS 30021884 9606 9606 BIOGRID
 Annotation of PDLIM1
 TCGA cancer survival map of PDLIM1


Calculate the hazards ratio based on Cox PH Model.
Add the 95% CI as dotted line.
Reset Add The plot axis-x order will follow the list.


Calculate the hazards ratio based on Cox PH Model.
We use log2(TPM + 1) for log-scale.
All Add
Reset The plot is based on the datasets of list.


 Disease information of  PDLIM1