TcoF overview
| TcoF: | PRPF6 | |
| GeneID: | 5728 | |
| Name: | Pre-mRNA-processing factor 6 | |
| Ensembl: | ENSG00000101161 | |
| Species: | Human | |
| Class: | class HC | |
| Family: | Others | |
| Disease: | 2 | |
| Go term: | 20 | |
| Pathway: | 2 | |
| Hallmark: | -- | |
| Super Enhancer: |
chr20:62653834-62657719 chr20:62609086-62639758 chr20:62608542-62646285 |
|
| Enhancer: |
chr20:62303980-62305290 chr20:62321800-62322150 chr20:62641670-62642630 chr20:62520590-62521200 chr20:62152250-62152630 chr20:62161580-62162090 chr20:62162280-62162680 chr20:62289960-62290580 chr20:62317230-62318990 chr20:62322300-62323000 chr20:62328540-62328680 chr20:62332060-62333180 chr20:62371390-62371720 chr20:62599310-62601160 chr20:62654230-62655900 chr20:62851340-62853240 chr20:62152720-62152860 chr20:62166410-62168430 chr20:62204580-62205530 chr20:62272750-62273460 chr20:62273650-62275010 chr20:62282250-62283920 chr20:62371880-62372720 chr20:62433680-62434430 chr20:62505170-62507160 chr20:62127390-62128970 chr20:62560880-62562200 chr20:62624840-62626260 chr20:62703700-62704530 chr20:61964520-61965540 chr20:61982880-61985110 chr20:62001820-62002210 chr20:62002530-62003060 chr20:62042190-62044540 chr20:62152940-62153020 chr20:62153520-62155620 chr20:62248080-62250110 chr20:62255810-62258300 chr20:62372830-62373220 chr20:62373970-62374050 chr20:62397950-62399440 chr20:62459300-62459610 chr20:62460020-62461700 chr20:62462290-62464750 chr20:62464840-62467340 chr20:62467860-62469150 chr20:62496740-62498950 chr20:62518950-62520540 chr20:62579080-62579740 chr20:62669560-62669640 chr20:62843640-62844880 chr20:62887220-62889500 chr20:62961280-62962600 chr20:62798020-62800260 chr20:62947050-62949430 chr20:62184460-62186950 chr20:62796090-62797620 chr20:62819190-62821410 chr20:62029770-62032100 chr20:62319120-62319280 chr20:62698370-62699390 chr20:62316950-62317140 chr20:62837150-62838940 chr20:62853400-62854460 chr20:62858830-62859240 chr20:62868000-62868630 chr20:62667400-62667480 chr20:62701180-62701610 chr20:62328880-62329630 chr20:62358240-62360380 chr20:62360490-62362980 chr20:62480840-62483200 chr20:62571660-62571730 chr20:62572070-62572140 chr20:62572400-62572460 chr20:62572560-62572810 chr20:62700840-62701110 chr20:62571410-62571500 chr20:62572210-62572300 chr20:62598140-62598220 chr20:62062720-62065030 chr20:62120510-62121830 chr20:62122090-62124480 chr20:62129190-62130410 chr20:62162800-62163870 chr20:62165060-62165500 chr20:62165670-62166290 chr20:62188040-62189430 chr20:62311300-62312010 chr20:62319400-62319490 chr20:62319530-62319650 chr20:62319960-62320400 chr20:62320490-62320850 chr20:62321000-62321100 chr20:62321220-62321430 chr20:62321560-62321640 chr20:62571840-62571940 chr20:62595570-62595670 chr20:62595740-62595840 chr20:62598360-62598730 chr20:62598880-62599180 chr20:62697890-62698260 chr20:62699490-62700710 chr20:62701990-62703220 chr20:62703300-62703520 chr20:62705730-62705810 chr20:62705900-62706470 chr20:62830260-62831240 chr20:62290860-62292650 chr20:62174830-62175570 chr20:62190720-62191280 chr20:62373410-62373480 chr20:62373580-62373680 chr20:62374140-62374230 chr20:62412370-62414500 chr20:62656050-62657290 chr20:62863740-62864720 chr20:62868740-62871110 chr20:62225340-62226230 chr20:62312550-62314980 chr20:62502970-62505020 chr20:62087620-62089790 chr20:62268320-62269040 chr20:62269340-62271050 chr20:62333250-62333480 chr20:62175700-62178060 chr20:62474820-62476820 chr20:61655960-61658010 chr20:61821290-61823270 chr20:61837240-61838690 chr20:61843070-61845210 chr20:61846950-61847210 chr20:61904270-61906760 chr20:61945240-61945420 chr20:62073880-62074810 chr20:62091410-62093200 chr20:62156050-62157940 chr20:62161080-62161430 chr20:62164040-62164120 chr20:62227120-62229100 chr20:62229210-62229890 chr20:62316450-62316870 chr20:62319740-62319880 chr20:62499860-62500640 chr20:62508660-62510920 chr20:62513960-62514070 chr20:62514170-62514520 chr20:62515140-62517360 chr20:62517390-62518910 chr20:62530130-62531190 chr20:62910190-62912320 chr20:62864760-62866310 chr20:62783230-62783980 chr20:62531610-62532150 chr20:62532220-62533400 chr20:62606890-62607040 chr20:62627580-62629230 chr20:62113000-62115290 chr20:62173720-62173790 chr20:62173940-62174660 chr20:62333570-62333790 chr20:62233490-62234310 chr20:62473540-62474080 chr20:61951720-61952360 chr20:61958180-61959300 chr20:61959330-61959430 chr20:61966380-61968220 chr20:62004960-62007030 chr20:62009530-62010640 chr20:62010660-62011770 chr20:62036220-62037540 chr20:62070070-62070950 chr20:62071750-62073750 chr20:62116740-62119040 chr20:62124640-62126150 chr20:62126460-62127200 chr20:62197810-62198190 chr20:62222080-62222860 chr20:62243510-62244250 chr20:62297430-62298820 chr20:62301520-62303900 chr20:62384220-62384760 chr20:62402600-62403450 chr20:62414810-62415530 chr20:62420390-62421170 chr20:62424150-62425100 chr20:62446100-62447970 chr20:62449130-62450180 chr20:62456650-62458760 chr20:62640210-62641550 chr20:62705400-62705490 chr20:62723470-62724040 chr20:62823180-62825380 chr20:62839840-62842030 chr20:62845000-62847050 chr20:62867780-62867900 chr20:62873610-62875210 chr20:62875380-62877680 chr20:62422140-62423940 chr20:62569560-62571180 chr20:62816070-62817170 chr20:62848640-62850260 chr20:62355720-62358190 chr20:62634290-62635140 chr20:62119780-62120270 |
|
| Promoter: |
chr20:62612485-62664453 |
ChIP-seq based regulatory details of PRPF6
| Sample ID | Experiment target | Biosample type | Biosample term name | GSM ID | Tissue type | Source |
|---|
Downstream target genes of PRPF6
Upstream regulatory details of PRPF6
Protein-protein interaction of PRPF6
| OFFICIAL_SYMBOL_A | OFFICIAL_SYMBOL_B | EXPERIMENTAL_SYSTEM | PUBMED_ID | ORGANISM_A_ID | ORGANISM_B_ID | SOURCE |
|---|---|---|---|---|---|---|
| PRPF6 | TXNL4B | Two-hybrid | 15161931 | 9606 | 9606 | BIOGRID |
| PRPF6 | TXNL4B | Affinity Capture-Western | 15161931 | 9606 | 9606 | BIOGRID |
| PRPF6 | TIMM44 | Two-hybrid | 10848612 | 9606 | 9606 | BIOGRID |
| PRPF6 | PRPF6 | Two-hybrid | 10848612 | 9606 | 9606 | BIOGRID |
| PRPF6 | YWHAB | Two-hybrid | 10848612 | 9606 | 9606 | BIOGRID |
| PRPF6 | AR | Affinity Capture-Western | 12039962 | 9606 | 9606 | BIOGRID |
| PRPF6 | PRPF31 | Two-hybrid | 16723661 | 9606 | 9606 | BIOGRID |
| PRPF6 | SART1 | Two-hybrid | 16723661 | 9606 | 9606 | BIOGRID |
| PRPF6 | TXNL4A | Two-hybrid | 16723661 | 9606 | 9606 | BIOGRID |
| PRPF6 | PRPF6 | Two-hybrid | 16723661 | 9606 | 9606 | BIOGRID |
| PRPF6 | EFTUD2 | Two-hybrid | 16723661 | 9606 | 9606 | BIOGRID |
| PRPF6 | SNRNP200 | Two-hybrid | 16723661 | 9606 | 9606 | BIOGRID |
| PRPF6 | PRPF8 | Two-hybrid | 16723661 | 9606 | 9606 | BIOGRID |
| PRPF6 | PRPF31 | Affinity Capture-Western | 16723661 | 9606 | 9606 | BIOGRID |
| PRPF6 | SART1 | Affinity Capture-Western | 16723661 | 9606 | 9606 | BIOGRID |
| PRPF6 | PRPF8 | Affinity Capture-Western | 16723661 | 9606 | 9606 | BIOGRID |
| PRPF6 | SNRNP200 | Affinity Capture-Western | 16723661 | 9606 | 9606 | BIOGRID |
| PRPF6 | PRPF3 | Affinity Capture-Western | 16723661 | 9606 | 9606 | BIOGRID |
| PRPF6 | PRPF3 | Reconstituted Complex | 16723661 | 9606 | 9606 | BIOGRID |
| PRPF6 | PRPF8 | Co-fractionation | 22939629 | 9606 | 9606 | BIOGRID |
| PRPF6 | SNRNP200 | Co-fractionation | 22939629 | 9606 | 9606 | BIOGRID |
| PRPF6 | SNRPD1 | Co-fractionation | 22939629 | 9606 | 9606 | BIOGRID |
| PRPF6 | SNRPD3 | Co-fractionation | 22939629 | 9606 | 9606 | BIOGRID |
| PRPF6 | SF3B3 | Co-fractionation | 22939629 | 9606 | 9606 | BIOGRID |
| PRPF6 | SNRPD2 | Co-fractionation | 22939629 | 9606 | 9606 | BIOGRID |
| PRPF6 | SNRPA1 | Co-fractionation | 22939629 | 9606 | 9606 | BIOGRID |
| PRPF6 | SRSF7 | Co-fractionation | 22939629 | 9606 | 9606 | BIOGRID |
| PRPF6 | U2AF1 | Co-fractionation | 22939629 | 9606 | 9606 | BIOGRID |
| PRPF6 | SRSF5 | Co-fractionation | 22939629 | 9606 | 9606 | BIOGRID |
| PRPF6 | PRPF3 | Co-fractionation | 22939629 | 9606 | 9606 | BIOGRID |
| PRPF6 | U2AF2 | Co-fractionation | 22939629 | 9606 | 9606 | BIOGRID |
| PRPF6 | SART1 | Co-fractionation | 22939629 | 9606 | 9606 | BIOGRID |
| PRPF6 | SRRM2 | Co-fractionation | 22939629 | 9606 | 9606 | BIOGRID |
| PRPF6 | SAP18 | Co-fractionation | 22939629 | 9606 | 9606 | BIOGRID |
| PRPF6 | SON | Co-fractionation | 22939629 | 9606 | 9606 | BIOGRID |
| PRPF6 | TPBG | Co-fractionation | 22939629 | 9606 | 9606 | BIOGRID |
| PRPF6 | THRAP3 | Co-fractionation | 22939629 | 9606 | 9606 | BIOGRID |
| PRPF6 | RPS13 | Co-fractionation | 22939629 | 9606 | 9606 | BIOGRID |
| PRPF6 | RPS24 | Co-fractionation | 22939629 | 9606 | 9606 | BIOGRID |
| PRPF6 | RBM14 | Co-fractionation | 22939629 | 9606 | 9606 | BIOGRID |
| PRPF6 | SUPT16H | Co-fractionation | 22939629 | 9606 | 9606 | BIOGRID |
| PRPF6 | TRA2A | Co-fractionation | 22939629 | 9606 | 9606 | BIOGRID |
| PRPF6 | ZNF326 | Co-fractionation | 22939629 | 9606 | 9606 | BIOGRID |
| PRPF6 | SRRM2 | Two-hybrid | 22365833 | 9606 | 9606 | BIOGRID |
| PRPF6 | PRPF31 | Two-hybrid | 22365833 | 9606 | 9606 | BIOGRID |
| PRPF6 | IK | Two-hybrid | 22365833 | 9606 | 9606 | BIOGRID |
| PRPF6 | CD2BP2 | Two-hybrid | 22365833 | 9606 | 9606 | BIOGRID |
| PRPF6 | IK | Affinity Capture-Luminescence | 22365833 | 9606 | 9606 | BIOGRID |
| PRPF6 | CD2BP2 | Co-fractionation | 26344197 | 9606 | 9606 | BIOGRID |
| PRPF6 | EFTUD2 | Co-fractionation | 26344197 | 9606 | 9606 | BIOGRID |
| PRPF6 | LUC7L2 | Co-fractionation | 26344197 | 9606 | 9606 | BIOGRID |
| PRPF6 | PRPF19 | Co-fractionation | 26344197 | 9606 | 9606 | BIOGRID |
| PRPF6 | PRPF3 | Co-fractionation | 26344197 | 9606 | 9606 | BIOGRID |
| PRPF6 | PRPF31 | Co-fractionation | 26344197 | 9606 | 9606 | BIOGRID |
| PRPF6 | PRPF4 | Co-fractionation | 26344197 | 9606 | 9606 | BIOGRID |
| PRPF6 | PRPF8 | Co-fractionation | 26344197 | 9606 | 9606 | BIOGRID |
| PRPF6 | SART1 | Co-fractionation | 26344197 | 9606 | 9606 | BIOGRID |
| PRPF6 | SF3A3 | Co-fractionation | 26344197 | 9606 | 9606 | BIOGRID |
| PRPF6 | SNRNP200 | Co-fractionation | 26344197 | 9606 | 9606 | BIOGRID |
| PRPF6 | SNRPD1 | Co-fractionation | 26344197 | 9606 | 9606 | BIOGRID |
| PRPF6 | SNRPD2 | Co-fractionation | 26344197 | 9606 | 9606 | BIOGRID |
| PRPF6 | TXNL4A | Affinity Capture-MS | 28514442 | 9606 | 9606 | BIOGRID |
| PRPF6 | SNRNP200 | Affinity Capture-MS | 27173435 | 9606 | 9606 | BIOGRID |
| PRPF6 | SMU1 | Affinity Capture-MS | 27173435 | 9606 | 9606 | BIOGRID |
| PRPF6 | RIOK1 | Affinity Capture-MS | 27173435 | 9606 | 9606 | BIOGRID |
| PRPF6 | EFTUD2 | Affinity Capture-MS | 27173435 | 9606 | 9606 | BIOGRID |
| PRPF6 | CD2BP2 | Affinity Capture-MS | 27173435 | 9606 | 9606 | BIOGRID |
Annotation of PRPF6
TCGA cancer survival map of PRPF6
Expression of PRPF6
Disease information of PRPF6