TcoF overview
| TcoF: | PTRF | |
| GeneID: | 284119 | |
| Name: | polymerase I and transcript release factor | |
| Ensembl: | ENSG00000177469? | |
| Species: | Human | |
| Class: | class 2 | |
| Family: | Others | |
| Disease: | 0 | |
| Go term: | -- | |
| Pathway: | 3 | |
| Hallmark: | -- | |
| Super Enhancer: |
chr17:40530260-40542544 chr17:40506647-40542727 chr17:40517994-40545118 chr17:40498469-40542883 chr17:40498432-40542427 chr17:40497982-40542442 chr17:40550009-40589363 chr17:40560037-40581725 chr17:40558136-40583350 chr17:40557352-40589755 chr17:40557793-40589293 chr17:40554095-40589575 chr17:40553730-40589491 chr17:40550074-40589565 chr17:40553639-40589596 chr17:40559923-40581459 chr17:40561075-40581129 chr17:40558527-40581399 chr17:40560978-40580937 chr17:40571298-40576538 chr17:40573168-40581616 chr17:40561066-40576470 chr17:40561067-40575932 chr17:40571728-40609638 chr17:40550843-40589003 chr17:40555196-40573789 chr17:40549839-40581431 chr17:40550342-40581248 chr17:40558281-40581704 chr17:40558617-40581303 chr17:40549963-40589899 chr17:40557372-40589521 chr17:40553612-40580407 chr17:40554309-40582215 chr17:40571353-40577960 chr17:40559416-40582636 chr17:40530022-40589513 chr17:40529796-40589632 chr17:40529885-40589709 chr17:40553751-40622291 chr17:40529834-40589577 chr17:40530666-40595141 chr17:40530469-40589547 chr17:40530372-40594676 chr17:40538189-40589321 chr17:40538200-40589164 chr17:40538230-40588796 chr17:40537921-40590115 chr17:40530770-40589151 |
|
| Enhancer: |
chr17:40072820-40075130 chr17:40118910-40120080 chr17:40471180-40473200 chr17:40479360-40481420 chr17:40481790-40483480 chr17:40513540-40515250 chr17:40537970-40540300 chr17:40572160-40574640 chr17:40819020-40819930 chr17:40820320-40821440 chr17:40925550-40925750 chr17:40925900-40926660 chr17:40933340-40934770 chr17:40934950-40935950 chr17:40956420-40957730 chr17:40966690-40967920 chr17:41116260-41116410 chr17:41158990-41161440 chr17:41162160-41163490 chr17:39846190-39846330 chr17:39846440-39847030 chr17:39959230-39959530 chr17:39979470-39981330 chr17:40026630-40027940 chr17:40038680-40039370 chr17:40054090-40054880 chr17:40061910-40062780 chr17:40062900-40063690 chr17:40063830-40065240 chr17:40065320-40065760 chr17:40065950-40066470 chr17:40066540-40068670 chr17:40068800-40069960 chr17:40113480-40113760 chr17:40139930-40140740 chr17:40314340-40315240 chr17:40316180-40317460 chr17:40317710-40318310 chr17:40331040-40332880 chr17:40345050-40345330 chr17:40345610-40345780 chr17:40357020-40359300 chr17:40362520-40364000 chr17:40440620-40441410 chr17:40442040-40443980 chr17:40447810-40449620 chr17:40449660-40451760 chr17:40452300-40452730 chr17:40452890-40453290 chr17:40456670-40457620 chr17:40457720-40458250 chr17:40458470-40459410 chr17:40459740-40460190 chr17:40460350-40461060 chr17:40461120-40461390 chr17:40461500-40462520 chr17:40463960-40465340 chr17:40474510-40475020 chr17:40475160-40475270 chr17:40475370-40475590 chr17:40475640-40476720 chr17:40476860-40476980 chr17:40477080-40478130 chr17:40481470-40481570 chr17:40481670-40481760 chr17:40485780-40485900 chr17:40489880-40490740 chr17:40497680-40498580 chr17:40498730-40500400 chr17:40610980-40612860 chr17:40647210-40647640 chr17:40688670-40689410 chr17:40706600-40706680 chr17:40707230-40709090 chr17:40719350-40719630 chr17:40729320-40729470 chr17:40811570-40811850 chr17:40849960-40850630 chr17:39925930-39927890 chr17:40124050-40125490 chr17:40483550-40485690 chr17:40647740-40649420 chr17:40500560-40502810 chr17:39845320-39846030 chr17:40705910-40706420 chr17:40805080-40806260 chr17:40826030-40826370 chr17:40719670-40720480 chr17:40693220-40695040 chr17:40441560-40441880 chr17:40811960-40812160 chr17:40822400-40822590 chr17:40822720-40823010 chr17:40825850-40825950 chr17:40826430-40827910 chr17:40260130-40261280 chr17:40620130-40621020 chr17:40138620-40139830 chr17:40322320-40323800 chr17:40330250-40330340 chr17:40330500-40330810 chr17:40354820-40356770 chr17:40622240-40623300 chr17:40399570-40401810 chr17:40426130-40428260 chr17:40402800-40403850 chr17:40344760-40344920 chr17:40689560-40690350 chr17:40705310-40705450 chr17:40705640-40705810 chr17:40821640-40821930 chr17:40824410-40825190 chr17:40825320-40825410 chr17:40705050-40705140 chr17:40985960-40986110 chr17:41029170-41029450 chr17:40784740-40785910 chr17:40812730-40814990 chr17:40872670-40873920 chr17:40957900-40958690 chr17:40958840-40959270 chr17:41030090-41030540 chr17:41046650-41047810 chr17:40812340-40812650 chr17:40985690-40985790 chr17:41150850-41151940 chr17:40183800-40186240 chr17:40186350-40186650 chr17:40211720-40213090 chr17:40259810-40259990 chr17:40262090-40262740 chr17:40263520-40263740 chr17:40263910-40264130 chr17:40264220-40264620 chr17:40373800-40375060 chr17:40468920-40469190 chr17:40489600-40489780 chr17:40631340-40632270 chr17:40838850-40838920 chr17:40467820-40468800 chr17:40738160-40738780 chr17:40738910-40739850 chr17:40146960-40148320 chr17:40148440-40149130 chr17:40253960-40254230 chr17:40258010-40259620 chr17:40854610-40854890 chr17:40856700-40857100 chr17:40857200-40858020 chr17:40858200-40859840 chr17:40927490-40927650 chr17:40855840-40856610 chr17:39975650-39975780 chr17:39975930-39976520 chr17:40180260-40180800 chr17:40280820-40282350 chr17:40342470-40342640 chr17:40371480-40371720 chr17:40433420-40434050 chr17:40315350-40315620 chr17:40802360-40804140 chr17:39739710-39739800 chr17:40002140-40003510 chr17:40052900-40054000 chr17:40179750-40180060 chr17:40233400-40235130 chr17:40846510-40847530 chr17:40848810-40849290 chr17:41150490-41150770 chr17:40141580-40142280 chr17:40456450-40456540 chr17:40644050-40646350 chr17:40690840-40692960 chr17:40726230-40726330 chr17:40918280-40919180 chr17:40971630-40972790 chr17:41005380-41006460 chr17:41006750-41007460 chr17:41007590-41008290 chr17:41104780-41105740 chr17:41105800-41106680 chr17:41165680-41165790 chr17:41165900-41166120 chr17:41170220-41170600 chr17:41170820-41172260 chr17:41180210-41180440 chr17:40254330-40255620 chr17:40050510-40052870 chr17:40154110-40155780 chr17:40587320-40589670 chr17:40677160-40677560 chr17:40727900-40729090 chr17:40070150-40072130 chr17:40152590-40153450 chr17:40364210-40365480 chr17:40395230-40396060 chr17:40422710-40423700 chr17:40570930-40571200 chr17:40674600-40675940 chr17:40737280-40738070 chr17:40750330-40751560 chr17:40960610-40961380 chr17:41056090-41056480 chr17:41220890-41221510 chr17:40529790-40532250 chr17:40974040-40975760 chr17:39963130-39963960 chr17:40129760-40132250 chr17:40174720-40175670 chr17:40262930-40263310 chr17:40286450-40286970 chr17:40315980-40316140 chr17:40404050-40406480 chr17:40775320-40777430 chr17:40817580-40817690 chr17:40817850-40818100 chr17:40818260-40818340 chr17:40818500-40818620 chr17:40986270-40986360 chr17:41044880-41046580 chr17:41115400-41116120 chr17:41141560-41142330 chr17:41142450-41142860 chr17:41152120-41153740 chr17:41163590-41164190 chr17:41164740-41165060 chr17:41166480-41166620 chr17:41168160-41168320 chr17:40238940-40239940 chr17:40101480-40101890 chr17:40134420-40135580 chr17:40140920-40141420 chr17:40825580-40825660 chr17:40255820-40256780 chr17:40312450-40314260 chr17:40721620-40721990 chr17:40902500-40904050 chr17:40919640-40920430 chr17:40823580-40824100 chr17:40670960-40672910 chr17:40618530-40620020 chr17:39928120-39930580 chr17:40160700-40162330 chr17:40162340-40164590 chr17:40478220-40478580 chr17:40739880-40741260 chr17:40781030-40782050 chr17:40282610-40283620 chr17:40518560-40519760 chr17:40406960-40407830 chr17:40506910-40508470 chr17:40035180-40035580 chr17:40047150-40048530 chr17:40553120-40553680 chr17:40553760-40554460 chr17:40969660-40970230 chr17:40379190-40379540 chr17:40102070-40102630 chr17:40261400-40261550 chr17:40344120-40344250 chr17:40179150-40179630 chr17:40639880-40640800 chr17:40658810-40659530 chr17:39973460-39974340 chr17:40720580-40720850 chr17:40720960-40721220 chr17:40936180-40936430 chr17:40936600-40937110 |
|
| Promoter: |
False |
ChIP-seq based regulatory details of PTRF
| Sample ID | Experiment target | Biosample type | Biosample term name | GSM ID | Tissue type | Source |
|---|---|---|---|---|---|---|
| TcoF_00_10060 | PTRF | cell line | K562 | - | Bone Marrow | ENCODE |
| TcoF_00_20693 | PTRF | cell line | K562 | - | Bone Marrow | Cistrome |
Downstream target genes of PTRF
Upstream regulatory details of PTRF
Protein-protein interaction of PTRF
| OFFICIAL_SYMBOL_A | OFFICIAL_SYMBOL_B | EXPERIMENTAL_SYSTEM | PUBMED_ID | ORGANISM_A_ID | ORGANISM_B_ID | SOURCE |
|---|---|---|---|---|---|---|
| PTRF | ZNF148 | Reconstituted Complex | 10727401 | 9606 | 9606 | BIOGRID |
| PTRF | TFF1 | Affinity Capture-Western | 9582279 | 9606 | 9606 | BIOGRID |
| PTRF | TRIM72 | Affinity Capture-Western | 21343302 | 9606 | 9606 | BIOGRID |
| PTRF | GTF3C4 | Co-fractionation | 22939629 | 9606 | 9606 | BIOGRID |
| PTRF | TMED10 | Co-fractionation | 22939629 | 9606 | 9606 | BIOGRID |
| PTRF | RPS4X | Co-fractionation | 22939629 | 9606 | 9606 | BIOGRID |
| PTRF | LIPE | Co-fractionation | 17026959 | 9606 | 9606 | BIOGRID |
| PTRF | LIPE | Affinity Capture-Western | 17026959 | 9606 | 9606 | BIOGRID |
| PTRF | MAGI3 | Affinity Capture-MS | 28514442 | 9606 | 9606 | BIOGRID |
| PTRF | MB21D2 | Affinity Capture-MS | 28514442 | 9606 | 9606 | BIOGRID |
| PTRF | MAD1L1 | Affinity Capture-MS | 28514442 | 9606 | 9606 | BIOGRID |
| PTRF | ZBTB1 | Affinity Capture-MS | 28514442 | 9606 | 9606 | BIOGRID |
| PTRF | ZNF622 | Affinity Capture-MS | 28514442 | 9606 | 9606 | BIOGRID |
| PTRF | FHL2 | Affinity Capture-MS | 28514442 | 9606 | 9606 | BIOGRID |
| PTRF | ZZEF1 | Affinity Capture-MS | 28514442 | 9606 | 9606 | BIOGRID |
| PTRF | UTRN | Affinity Capture-MS | 28514442 | 9606 | 9606 | BIOGRID |
| PTRF | FBXO28 | Affinity Capture-MS | 28514442 | 9606 | 9606 | BIOGRID |
| PTRF | TRIM26 | Affinity Capture-MS | 28514442 | 9606 | 9606 | BIOGRID |
| PTRF | TERF2 | Affinity Capture-MS | 28514442 | 9606 | 9606 | BIOGRID |
| PTRF | HECTD3 | Affinity Capture-MS | 28514442 | 9606 | 9606 | BIOGRID |
| PTRF | KLHL15 | Affinity Capture-MS | 28514442 | 9606 | 9606 | BIOGRID |
| PTRF | SNTB2 | Affinity Capture-MS | 28514442 | 9606 | 9606 | BIOGRID |
| PTRF | OBSL1 | Affinity Capture-MS | 28514442 | 9606 | 9606 | BIOGRID |
| PTRF | CRBN | Affinity Capture-MS | 28514442 | 9606 | 9606 | BIOGRID |
| PTRF | HSPA8 | Affinity Capture-MS | 28514442 | 9606 | 9606 | BIOGRID |
| PTRF | EXOC7 | Affinity Capture-MS | 28514442 | 9606 | 9606 | BIOGRID |
| PTRF | PTRF | Two-hybrid | 32296183 | 9606 | 9606 | BIOGRID |
| PTRF | ZFP1 | Two-hybrid | 32296183 | 9606 | 9606 | BIOGRID |
| PTRF | TNFAIP8L1 | Two-hybrid | 32296183 | 9606 | 9606 | BIOGRID |
| PTRF | SPANXN3 | Two-hybrid | 32296183 | 9606 | 9606 | BIOGRID |
| PTRF | SPANXN2 | Two-hybrid | 32296183 | 9606 | 9606 | BIOGRID |
| PTRF | MRPL45 | Two-hybrid | 32296183 | 9606 | 9606 | BIOGRID |
| PTRF | OLFM3 | Proximity Label-MS | 30021884 | 9606 | 9606 | BIOGRID |
| PTRF | SEMA6A | Proximity Label-MS | 30021884 | 9606 | 9606 | BIOGRID |
| PTRF | MYH14 | Proximity Label-MS | 30021884 | 9606 | 9606 | BIOGRID |
| PTRF | CFAP57 | Proximity Label-MS | 30021884 | 9606 | 9606 | BIOGRID |
| PTRF | SOCS3 | Protein-peptide | 32548823 | 9606 | 9606 | BIOGRID |
Annotation of PTRF
TCGA cancer survival map of PTRF
Expression of PTRF
Disease information of PTRF