TcoF overview
| TcoF: | RTF1 | |
| GeneID: | 29946 | |
| Name: | RNA polymerase-associated protein RTF1 homolog | |
| Ensembl: | ENSG00000137815 | |
| Species: | Human | |
| Class: | class HC | |
| Family: | Others | |
| Disease: | 0 | |
| Go term: | 16 | |
| Pathway: | 1 | |
| Hallmark: | -- | |
| Super Enhancer: |
chr15:41759060-41784448 chr15:41768064-41783332 |
|
| Enhancer: |
chr15:41952720-41955100 chr15:42071560-42073100 chr15:41576310-41577420 chr15:42046770-42047590 chr15:41693060-41694340 chr15:41793760-41793830 chr15:41805320-41805860 chr15:41851580-41853320 chr15:41854920-41856380 chr15:41860560-41861070 chr15:41461180-41463350 chr15:41603790-41605470 chr15:41665880-41667900 chr15:41794700-41794980 chr15:41795060-41795160 chr15:41804160-41804310 chr15:41804460-41804900 chr15:41805080-41805170 chr15:41827830-41828320 chr15:42273660-42273770 chr15:41828420-41828690 chr15:41465790-41466200 chr15:41512100-41514360 chr15:41906520-41907640 chr15:41499190-41501690 chr15:41709510-41711980 chr15:41833980-41836410 chr15:41853510-41853730 chr15:41853840-41854740 chr15:41856470-41857220 chr15:41899020-41899990 chr15:41912540-41914990 chr15:42101750-42102520 chr15:42102680-42103080 chr15:42103140-42103370 chr15:42104330-42104710 chr15:42120390-42122530 chr15:42175680-42176040 chr15:41786620-41788990 chr15:42067590-42069380 chr15:42069450-42070150 chr15:41857340-41859550 chr15:41859740-41860410 chr15:41541300-41542760 chr15:41614840-41617190 chr15:41757600-41758330 chr15:41794050-41794190 chr15:41476790-41478100 chr15:41305830-41306450 chr15:41582810-41584370 chr15:41720710-41722200 chr15:41775760-41776720 chr15:42087920-42090350 chr15:42090580-42092020 chr15:41602050-41603380 chr15:41716040-41717580 chr15:41555080-41557420 chr15:41577560-41578200 chr15:41903800-41905530 chr15:41989220-41990740 chr15:42066810-42067360 chr15:41509940-41512020 chr15:41629820-41630860 chr15:41044380-41046790 chr15:41165700-41165880 chr15:41165940-41166120 chr15:41187060-41188130 chr15:41221930-41222040 chr15:41222320-41222820 chr15:41489750-41491360 chr15:41508030-41508860 chr15:41769480-41769650 chr15:41797260-41797400 chr15:41797730-41797910 chr15:41798480-41799290 chr15:41799490-41799750 chr15:41799860-41800260 chr15:41800420-41801220 chr15:41801330-41802580 chr15:42009970-42011250 chr15:42037760-42039750 chr15:42057260-42058200 chr15:41861220-41862220 chr15:41056420-41057160 chr15:41068830-41069750 chr15:41229720-41230220 chr15:41246010-41246420 chr15:41246460-41247570 chr15:41272640-41275050 chr15:41275280-41275950 chr15:41276550-41277530 chr15:41442550-41443420 chr15:41769710-41770320 chr15:41793090-41793660 chr15:41794400-41794590 chr15:42085770-42087840 chr15:42092110-42093560 chr15:42232090-42233700 chr15:42233810-42235260 chr15:42235360-42237580 chr15:42239080-42240690 chr15:42241960-42243430 chr15:42247470-42248870 chr15:42249200-42250740 chr15:42253040-42254050 chr15:41334850-41336990 chr15:42203550-42205750 chr15:41309520-41310190 chr15:41310450-41311180 chr15:41370870-41371890 chr15:41482960-41483630 chr15:41548080-41549100 chr15:41550700-41552450 chr15:41862540-41862800 chr15:41862900-41863230 chr15:41290460-41292880 chr15:41803780-41804010 chr15:42140830-42142060 chr15:42183260-42185090 chr15:42185260-42185470 chr15:42185740-42186090 chr15:41224430-41224510 chr15:41293100-41294530 chr15:41718650-41719090 chr15:41766400-41766810 chr15:41766900-41767720 chr15:41803540-41803610 chr15:41881610-41883780 chr15:42113270-42113780 chr15:42131120-42132350 chr15:42154860-42154980 chr15:42155100-42155900 chr15:42174940-42175190 chr15:42271580-42273500 chr15:42337770-42339920 chr15:42377330-42377680 chr15:42377720-42378410 chr15:42399560-42400240 chr15:42410370-42412450 chr15:42413200-42414490 chr15:42446660-42447710 chr15:42447790-42448630 chr15:41532960-41534710 chr15:41796840-41796970 chr15:42111850-42113020 chr15:41730630-41732200 chr15:42022070-42023670 chr15:42103430-42104150 chr15:41542850-41545270 chr15:42142160-42143050 chr15:42312820-42314660 chr15:42340700-42341640 chr15:42206370-42208620 chr15:41399090-41399510 chr15:41735460-41735960 chr15:41921340-41922660 chr15:41928610-41931010 chr15:42074260-42076720 chr15:41815340-41815440 chr15:41984310-41984600 chr15:41986900-41988270 chr15:41405680-41408170 chr15:42221480-42223950 chr15:41398160-41398640 chr15:42240770-42241120 |
|
| Promoter: |
chr15:41700606-41775761 |
ChIP-seq based regulatory details of RTF1
| Sample ID | Experiment target | Biosample type | Biosample term name | GSM ID | Tissue type | Source |
|---|
Downstream target genes of RTF1
Upstream regulatory details of RTF1
Protein-protein interaction of RTF1
| OFFICIAL_SYMBOL_A | OFFICIAL_SYMBOL_B | EXPERIMENTAL_SYSTEM | PUBMED_ID | ORGANISM_A_ID | ORGANISM_B_ID | SOURCE |
|---|---|---|---|---|---|---|
| RTF1 | LEO1 | Affinity Capture-Western | 20178742 | 9606 | 9606 | BIOGRID |
| RTF1 | CDC73 | Affinity Capture-Western | 20178742 | 9606 | 9606 | BIOGRID |
| RTF1 | CTR9 | Affinity Capture-Western | 20178742 | 9606 | 9606 | BIOGRID |
| RTF1 | WDR61 | Affinity Capture-Western | 20178742 | 9606 | 9606 | BIOGRID |
| RTF1 | PAF1 | Affinity Capture-Western | 20178742 | 9606 | 9606 | BIOGRID |
| RTF1 | NEDD4 | Affinity Capture-Western | 19953087 | 9606 | 9606 | BIOGRID |
| RTF1 | HADHA | Affinity Capture-MS | 20305087 | 9606 | 9606 | BIOGRID |
| RTF1 | HADHB | Affinity Capture-MS | 20305087 | 9606 | 9606 | BIOGRID |
| RTF1 | APP | Reconstituted Complex | 21832049 | 9606 | 9606 | BIOGRID |
| RTF1 | SUPT16H | Co-fractionation | 22939629 | 9606 | 9606 | BIOGRID |
| RTF1 | SSRP1 | Co-fractionation | 22939629 | 9606 | 9606 | BIOGRID |
| RTF1 | TRPM8 | Co-fractionation | 22939629 | 9606 | 9606 | BIOGRID |
| RTF1 | ETF1 | Co-fractionation | 22863883 | 9606 | 9606 | BIOGRID |
| RTF1 | STAT1 | Co-fractionation | 22863883 | 9606 | 9606 | BIOGRID |
| RTF1 | CHD1 | Co-fractionation | 26344197 | 9606 | 9606 | BIOGRID |
| RTF1 | CTR9 | Co-fractionation | 26344197 | 9606 | 9606 | BIOGRID |
| RTF1 | RPL37 | Co-fractionation | 26344197 | 9606 | 9606 | BIOGRID |
| RTF1 | SRRM2 | Co-fractionation | 26344197 | 9606 | 9606 | BIOGRID |
| RTF1 | SUPT16H | Co-fractionation | 26344197 | 9606 | 9606 | BIOGRID |
| RTF1 | SUPT5H | Co-fractionation | 26344197 | 9606 | 9606 | BIOGRID |
| RTF1 | RTF1 | Positive Genetic | 30033366 | 9606 | 9606 | BIOGRID |
| RTF1 | SEC22B | Negative Genetic | 30033366 | 9606 | 9606 | BIOGRID |
| RTF1 | SNIP1 | Positive Genetic | 30033366 | 9606 | 9606 | BIOGRID |
| RTF1 | UBA2 | Positive Genetic | 30033366 | 9606 | 9606 | BIOGRID |
| RTF1 | USE1 | Negative Genetic | 30033366 | 9606 | 9606 | BIOGRID |
| RTF1 | VPS4A | Negative Genetic | 30033366 | 9606 | 9606 | BIOGRID |
| RTF1 | WDR5 | Negative Genetic | 28481362 | 9606 | 9606 | BIOGRID |
| RTF1 | SETD1B | Negative Genetic | 28481362 | 9606 | 9606 | BIOGRID |
| RTF1 | TRRAP | Positive Genetic | 28481362 | 9606 | 9606 | BIOGRID |
| RTF1 | THOC1 | Positive Genetic | 28481362 | 9606 | 9606 | BIOGRID |
| RTF1 | RUVBL1 | Positive Genetic | 28481362 | 9606 | 9606 | BIOGRID |
| RTF1 | PAF1 | Affinity Capture-MS | 24981860 | 9606 | 9606 | BIOGRID |
| RTF1 | PDCD6 | Affinity Capture-MS | 24981860 | 9606 | 9606 | BIOGRID |
Annotation of RTF1
TCGA cancer survival map of RTF1
Expression of RTF1
Disease information of RTF1