TcoF overview
| TcoF: | SF1 | |
| GeneID: | 79811 | |
| Name: | Splicing factor 1 | |
| Ensembl: | ENSG00000168066 | |
| Species: | Human | |
| Class: | class 2 | |
| Family: | Others | |
| Disease: | 1 | |
| Go term: | 20 | |
| Pathway: | 1 | |
| Hallmark: | -- | |
| Super Enhancer: |
chr11:64529561-64533424 chr11:64544018-64549252 chr11:64529528-64535769 chr11:64529547-64534392 chr11:64529566-64533448 chr11:64537947-64551205 chr11:64544994-64548366 chr11:64528911-64551545 |
|
| Enhancer: |
chr11:64643110-64645530 chr11:63974290-63974820 chr11:64019410-64021880 chr11:64037810-64039080 chr11:64570420-64570520 chr11:64622330-64622790 chr11:64762750-64764340 chr11:64809340-64811690 chr11:64879540-64879980 chr11:64880180-64880280 chr11:64949480-64950170 chr11:64681970-64684430 chr11:64863950-64864470 chr11:64880340-64880690 chr11:64036920-64037300 chr11:64332810-64335070 chr11:64544100-64544970 chr11:64609380-64611880 chr11:64002370-64002920 chr11:64009690-64009850 chr11:64012760-64013880 chr11:64509580-64510260 chr11:64510410-64511470 chr11:64702350-64702460 chr11:64991050-64992990 chr11:65148100-65149040 chr11:64217120-64217360 chr11:64331900-64332690 chr11:64360360-64360870 chr11:64419630-64421160 chr11:64569090-64569180 chr11:64569590-64569890 chr11:64569960-64570030 chr11:64570130-64570350 chr11:64577600-64577730 chr11:64692500-64692940 chr11:64814000-64814940 chr11:64815210-64815450 chr11:64815520-64815620 chr11:64815690-64815770 chr11:64815860-64816420 chr11:64972330-64973180 chr11:64988640-64989940 chr11:64990070-64990930 chr11:65047100-65048460 chr11:65111540-65113130 chr11:65122430-65123260 chr11:65144550-65146840 chr11:65292740-65293040 chr11:65293190-65293390 chr11:65308090-65308340 chr11:65308430-65308590 chr11:65314040-65314260 chr11:65314390-65314900 chr11:65393530-65394370 chr11:65409070-65409720 chr11:65422470-65423150 chr11:64569220-64569530 chr11:64815040-64815110 chr11:65109030-65111210 chr11:64535320-64535570 chr11:64566950-64567070 chr11:64567160-64567580 chr11:64880890-64880960 chr11:64329910-64331770 chr11:64359430-64360250 chr11:63675770-63676340 chr11:63889650-63891120 chr11:63898360-63900360 chr11:63902340-63904560 chr11:63908410-63910560 chr11:64059040-64060410 chr11:64079890-64080560 chr11:64114380-64116800 chr11:64119860-64120210 chr11:64120970-64121180 chr11:64121290-64121470 chr11:64126760-64126840 chr11:64127850-64127940 chr11:64128060-64128600 chr11:64128710-64128940 chr11:64139690-64142160 chr11:64145770-64146640 chr11:64147520-64147790 chr11:64148510-64148940 chr11:64326710-64328300 chr11:64347550-64349560 chr11:64375560-64377750 chr11:64408520-64410010 chr11:64489340-64490440 chr11:64526180-64527120 chr11:64568660-64569050 chr11:64881070-64882180 chr11:64950440-64950590 chr11:64950670-64950940 chr11:64951060-64953380 chr11:65029840-65032300 chr11:65101390-65103850 chr11:64060680-64062860 chr11:64126920-64127630 chr11:64641990-64642770 chr11:64864600-64866680 chr11:64387840-64390220 chr11:64405120-64406280 chr11:64504510-64505070 chr11:64602630-64602810 chr11:64602890-64602970 chr11:64603090-64603230 chr11:64603320-64603580 chr11:64603770-64603890 chr11:64604000-64604100 chr11:64604490-64604960 chr11:64693410-64694180 chr11:64883070-64883360 chr11:64883710-64883870 chr11:64609210-64609280 chr11:64010030-64010670 chr11:64002970-64003280 chr11:64067900-64068000 chr11:64108220-64108370 chr11:64702930-64703300 chr11:65061730-65062010 chr11:65062120-65063010 chr11:64821050-64821720 chr11:64821830-64821920 chr11:64481420-64483420 chr11:64567860-64568230 chr11:64418110-64418720 chr11:64568300-64568370 chr11:64568500-64568580 chr11:64567690-64567780 chr11:64639930-64641160 chr11:64641500-64641890 chr11:64538750-64540900 chr11:63670630-63671450 chr11:63671620-63672250 chr11:63680420-63681420 chr11:63683080-63683800 chr11:63918830-63919760 chr11:63961800-63961950 chr11:63978640-63978740 chr11:63986830-63986990 chr11:64073920-64074630 chr11:64108490-64108580 chr11:64108650-64108740 chr11:64416380-64417910 chr11:64497270-64497520 chr11:64506950-64507100 chr11:64557940-64559180 chr11:64565130-64566260 chr11:64566300-64566890 chr11:64713630-64714840 chr11:64729440-64730820 chr11:64803140-64803380 chr11:64953520-64953640 chr11:65113280-65113400 chr11:65116400-65117280 chr11:64027710-64028870 chr11:65010440-65012540 chr11:64497100-64497230 chr11:64506480-64506830 chr11:64534720-64535030 chr11:64535760-64536490 chr11:63681800-63681880 chr11:63682010-63682120 chr11:63682430-63682640 chr11:63682730-63683020 chr11:63689320-63690740 chr11:63742270-63743700 chr11:64010780-64010920 chr11:64010960-64011310 chr11:64023290-64023840 chr11:64030280-64030960 chr11:64116930-64117020 chr11:64117140-64118630 chr11:64335290-64336140 chr11:64523030-64525250 chr11:64602440-64602510 chr11:64714940-64715250 chr11:65056550-65057260 chr11:65300320-65302690 chr11:65307100-65307190 chr11:65308760-65309070 chr11:65315290-65315390 chr11:65318700-65318870 chr11:65318950-65319010 chr11:65319030-65319440 chr11:65319630-65319710 chr11:65319880-65320330 chr11:65320730-65320890 chr11:65361350-65362920 chr11:65386720-65387000 chr11:65425970-65426180 chr11:65426290-65427130 chr11:65427690-65429150 chr11:64602050-64602320 chr11:64702650-64702820 chr11:64786210-64787890 chr11:64825720-64825800 chr11:64937730-64938790 chr11:65063460-65064590 chr11:63887500-63889600 chr11:63975000-63977460 chr11:63982130-63983240 chr11:64012430-64012670 chr11:64096200-64098020 chr11:64426400-64427800 chr11:64628560-64629440 chr11:64986680-64988460 chr11:65053070-65055000 chr11:65055770-65056520 chr11:65061110-65061620 chr11:65068090-65070560 chr11:65089900-65090360 chr11:65137550-65139990 chr11:65157000-65159110 chr11:65159120-65160320 chr11:64167420-64168740 chr11:64206150-64208610 chr11:64872780-64873970 chr11:64012300-64012400 chr11:64266610-64268640 chr11:64312080-64314380 chr11:64451720-64452410 chr11:64576560-64577120 chr11:64737860-64739340 chr11:64993510-64994350 chr11:65156170-65156830 chr11:64203940-64205700 chr11:64385310-64387760 chr11:64540980-64543440 chr11:64543590-64543960 chr11:64627810-64628390 chr11:64657640-64658600 chr11:64757280-64757540 chr11:64882300-64882380 chr11:64882550-64882780 chr11:64882870-64882940 chr11:64975730-64976310 chr11:65147410-65147600 chr11:65147710-65148000 chr11:65172540-65173520 chr11:65215400-65217030 chr11:65248720-65251110 chr11:65252540-65253890 chr11:65253980-65254480 chr11:65293820-65294250 chr11:65304600-65305270 chr11:65306930-65307010 chr11:65307350-65307480 chr11:65309200-65310570 chr11:65311520-65313910 chr11:65320450-65320630 chr11:65321000-65321170 chr11:65374280-65374740 chr11:65374980-65375110 chr11:65375290-65375390 chr11:65410110-65411660 chr11:65417140-65417220 chr11:65417520-65417600 chr11:65417660-65417870 chr11:65417950-65418030 chr11:65429310-65429400 chr11:65429560-65429640 chr11:65429670-65430290 chr11:65479920-65480240 chr11:65480310-65480390 chr11:65487280-65487510 chr11:65487640-65487710 chr11:65487890-65488060 chr11:64339000-64341100 chr11:64521820-64522160 chr11:64522310-64522740 chr11:64595260-64596940 chr11:64818330-64819460 chr11:64941280-64943070 chr11:64636680-64638690 chr11:65108540-65108860 chr11:64564190-64564280 chr11:64564370-64564450 chr11:64011340-64011430 chr11:64034500-64034650 chr11:64039280-64041770 chr11:64077900-64079210 chr11:64309690-64310880 chr11:64043860-64045340 chr11:65174640-65176490 chr11:64031070-64031160 chr11:64031270-64031490 chr11:64031580-64032420 chr11:65161150-65161350 chr11:65178270-65178710 chr11:65194000-65196440 chr11:64428010-64428220 chr11:64502240-64502580 chr11:64158070-64159740 chr11:64378170-64380270 chr11:64981900-64982290 chr11:64726900-64727560 chr11:64011610-64011950 chr11:64518510-64518790 chr11:64520660-64520990 chr11:64534550-64534660 chr11:64138640-64138750 chr11:64415810-64416200 chr11:64519580-64519870 chr11:64533800-64534280 chr11:64563210-64563740 chr11:64563860-64563960 chr11:64564490-64564570 chr11:64564850-64564970 chr11:64519980-64520520 |
|
| Promoter: |
chr11:64532078-64546258 |
ChIP-seq based regulatory details of SF1
| Sample ID | Experiment target | Biosample type | Biosample term name | GSM ID | Tissue type | Source |
|---|---|---|---|---|---|---|
| TcoF_00_20330 | SF1 | cell line | H295R | GSM1080947 | Adrenal Gland | Cistrome |
| TcoF_00_20331 | SF1 | cell line | H295R | GSM1080948 | Adrenal Gland | Cistrome |
| TcoF_00_20329 | SF1 | cell line | H295R | GSM1080949 | Adrenal Gland | Cistrome |
| TcoF_00_20332 | SF1 | cell line | H295R | GSM1080950 | Adrenal Gland | Cistrome |
Downstream target genes of SF1
Upstream regulatory details of SF1
Protein-protein interaction of SF1
| OFFICIAL_SYMBOL_A | OFFICIAL_SYMBOL_B | EXPERIMENTAL_SYSTEM | PUBMED_ID | ORGANISM_A_ID | ORGANISM_B_ID | SOURCE |
|---|---|---|---|---|---|---|
| SF1 | DDX17 | Two-hybrid | 16189514 | 9606 | 9606 | BIOGRID |
| SF1 | WWP2 | Two-hybrid | 16189514 | 9606 | 9606 | BIOGRID |
| SF1 | RBPMS | Two-hybrid | 16189514 | 9606 | 9606 | BIOGRID |
| SF1 | U2AF2 | Two-hybrid | 16189514 | 9606 | 9606 | BIOGRID |
| SF1 | EWSR1 | Two-hybrid | 9660765 | 9606 | 9606 | BIOGRID |
| SF1 | U2AF2 | Two-hybrid | 9512519 | 9606 | 9606 | BIOGRID |
| SF1 | U2AF2 | Reconstituted Complex | 9512519 | 9606 | 9606 | BIOGRID |
| SF1 | TCERG1 | Reconstituted Complex | 11604498 | 9606 | 9606 | BIOGRID |
| SF1 | U2AF2 | Reconstituted Complex | 9150140 | 9606 | 9606 | BIOGRID |
| SF1 | U2AF2 | Two-hybrid | 9150140 | 9606 | 9606 | BIOGRID |
| SF1 | ZNF461 | Reconstituted Complex | 16595694 | 9606 | 9606 | BIOGRID |
| SF1 | PML | Co-localization | 21360626 | 9606 | 9606 | BIOGRID |
| SF1 | NFKB1 | Affinity Capture-Western | 12917325 | 9606 | 9606 | BIOGRID |
| SF1 | HDAC5 | Reconstituted Complex | 12917325 | 9606 | 9606 | BIOGRID |
| SF1 | EFTUD2 | Co-fractionation | 22939629 | 9606 | 9606 | BIOGRID |
| SF1 | VDAC1 | Co-fractionation | 22939629 | 9606 | 9606 | BIOGRID |
| SF1 | MPLKIP | Co-fractionation | 22939629 | 9606 | 9606 | BIOGRID |
| SF1 | ZC3H11A | Co-fractionation | 22939629 | 9606 | 9606 | BIOGRID |
| SF1 | TMED4 | Co-fractionation | 22939629 | 9606 | 9606 | BIOGRID |
| SF1 | TOMM40 | Co-fractionation | 22939629 | 9606 | 9606 | BIOGRID |
| SF1 | SRPRB | Co-fractionation | 22939629 | 9606 | 9606 | BIOGRID |
| SF1 | VDAC3 | Co-fractionation | 22939629 | 9606 | 9606 | BIOGRID |
| SF1 | STIM1 | Co-fractionation | 22939629 | 9606 | 9606 | BIOGRID |
| SF1 | UBE2L3 | Co-fractionation | 22939629 | 9606 | 9606 | BIOGRID |
| SF1 | VAMP2 | Co-fractionation | 22939629 | 9606 | 9606 | BIOGRID |
| SF1 | TAGLN | Co-fractionation | 22939629 | 9606 | 9606 | BIOGRID |
| SF1 | ZFR | Co-fractionation | 22939629 | 9606 | 9606 | BIOGRID |
| SF1 | SORCS3 | Co-fractionation | 22939629 | 9606 | 9606 | BIOGRID |
| SF1 | SIN3A | Co-fractionation | 22939629 | 9606 | 9606 | BIOGRID |
| SF1 | STOM | Co-fractionation | 22939629 | 9606 | 9606 | BIOGRID |
| SF1 | SRP9 | Co-fractionation | 22939629 | 9606 | 9606 | BIOGRID |
| SF1 | SF3A1 | Two-hybrid | 22365833 | 9606 | 9606 | BIOGRID |
| SF1 | SF3B4 | Two-hybrid | 22365833 | 9606 | 9606 | BIOGRID |
| SF1 | RBM17 | Two-hybrid | 22365833 | 9606 | 9606 | BIOGRID |
| SF1 | U2AF2 | Two-hybrid | 22365833 | 9606 | 9606 | BIOGRID |
| SF1 | RBM10 | Two-hybrid | 22365833 | 9606 | 9606 | BIOGRID |
| SF1 | SF1 | Two-hybrid | 22365833 | 9606 | 9606 | BIOGRID |
| SF1 | ILF3 | Two-hybrid | 22365833 | 9606 | 9606 | BIOGRID |
| SF1 | EFTUD2 | Two-hybrid | 22365833 | 9606 | 9606 | BIOGRID |
| SF1 | BCAS2 | Two-hybrid | 22365833 | 9606 | 9606 | BIOGRID |
| SF1 | WDR83 | Two-hybrid | 22365833 | 9606 | 9606 | BIOGRID |
| SF1 | RBM7 | Two-hybrid | 22365833 | 9606 | 9606 | BIOGRID |
| SF1 | DDX17 | Two-hybrid | 22365833 | 9606 | 9606 | BIOGRID |
| SF1 | HNRNPK | Two-hybrid | 22365833 | 9606 | 9606 | BIOGRID |
| SF1 | HNRNPUL1 | Two-hybrid | 22365833 | 9606 | 9606 | BIOGRID |
| SF1 | RBM4 | Two-hybrid | 22365833 | 9606 | 9606 | BIOGRID |
| SF1 | WDR77 | Two-hybrid | 22365833 | 9606 | 9606 | BIOGRID |
| SF1 | HNRNPF | Two-hybrid | 22365833 | 9606 | 9606 | BIOGRID |
| SF1 | HNRNPH1 | Two-hybrid | 22365833 | 9606 | 9606 | BIOGRID |
| SF1 | HNRNPH2 | Two-hybrid | 22365833 | 9606 | 9606 | BIOGRID |
| SF1 | IL7R | Protein-RNA | 23151878 | 9606 | 9606 | BIOGRID |
| SF1 | RANBP3 | Co-fractionation | 22863883 | 9606 | 9606 | BIOGRID |
| SF1 | MKRN3 | Two-hybrid | 25416956 | 9606 | 9606 | BIOGRID |
| SF1 | CIAO1 | Two-hybrid | 25416956 | 9606 | 9606 | BIOGRID |
| SF1 | FAM168A | Two-hybrid | 25416956 | 9606 | 9606 | BIOGRID |
| SF1 | TRIM69 | Two-hybrid | 25416956 | 9606 | 9606 | BIOGRID |
| SF1 | KRTAP26-1 | Two-hybrid | 25416956 | 9606 | 9606 | BIOGRID |
| SF1 | CAB39 | Co-fractionation | 26344197 | 9606 | 9606 | BIOGRID |
| SF1 | CCDC25 | Co-fractionation | 26344197 | 9606 | 9606 | BIOGRID |
| SF1 | UBE2N | Co-fractionation | 26344197 | 9606 | 9606 | BIOGRID |
| SF1 | SF3B1 | Reconstituted Complex | 31110137 | 9606 | 9606 | BIOGRID |
| SF1 | PUF60 | Two-hybrid | 32296183 | 9606 | 9606 | BIOGRID |
| SF1 | UBL5 | Two-hybrid | 32296183 | 9606 | 9606 | BIOGRID |
| SF1 | EPB41 | Affinity Capture-MS | 24981860 | 9606 | 9606 | BIOGRID |
| SF1 | HSH155 | Co-crystal Structure | 31110137 | 9606 | 559292 | BIOGRID |
Annotation of SF1
TCGA cancer survival map of SF1
Expression of SF1
Disease information of SF1