TcoF overview
TcoF: SMARCAD1
GeneID: 6602
Name: SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A containing DEAD/H box 1
Ensembl: ENSG00000163104
Species: Human
Class: NA
Family: SWI/SNF
Disease: 6
Go term: 17
Pathway: --
Hallmark: 2
Super Enhancer:

chr4:95072918-95099699 chr4:95073608-95098390 chr4:95079645-95090383

--
Enhancer:

chr4:95196120-95197480 chr4:95155550-95156730 chr4:95255790-95256780 chr4:95393060-95395070 chr4:95468800-95470580 chr4:95408420-95410700 chr4:95426150-95427340 chr4:95427470-95429820 chr4:95436690-95438980 chr4:95447070-95449490 chr4:95480140-95481970 chr4:95482350-95483440 chr4:95183090-95184420 chr4:95373150-95375300 chr4:95376540-95376960 chr4:95452380-95454340 chr4:95457140-95457530 chr4:95458530-95460560 chr4:95462700-95463260 chr4:95562160-95564180 chr4:95381500-95381900 chr4:95389200-95390980 chr4:95524250-95525280 chr4:94735770-94736340 chr4:95085080-95086280 chr4:95340340-95342360 chr4:95498440-95498600 chr4:95135870-95136720 chr4:95180580-95182210

--
Promoter:

chr4:95128762-95212443

False
 ChIP-seq based regulatory details of SMARCAD1
select * from encode where Experiment_target='SMARCAD1'
Sample ID Experiment target Biosample type Biosample term name GSM ID Tissue type Source
 Downstream target genes of SMARCAD1
 Protein-protein interaction of SMARCAD1
OFFICIAL_SYMBOL_A OFFICIAL_SYMBOL_B EXPERIMENTAL_SYSTEM PUBMED_ID ORGANISM_A_ID ORGANISM_B_ID SOURCE
SMARCAD1 TRIM28 Affinity Capture-MS 21549307 9606 9606 BIOGRID
SMARCAD1 TRIM28 Affinity Capture-Western 21549307 9606 9606 BIOGRID
SMARCAD1 TRIM28 Reconstituted Complex 21549307 9606 9606 BIOGRID
SMARCAD1 CBX3 Affinity Capture-MS 21549307 9606 9606 BIOGRID
SMARCAD1 HDAC1 Affinity Capture-MS 21549307 9606 9606 BIOGRID
SMARCAD1 HDAC2 Affinity Capture-MS 21549307 9606 9606 BIOGRID
SMARCAD1 MTA3 Affinity Capture-MS 21549307 9606 9606 BIOGRID
SMARCAD1 RING1 Affinity Capture-MS 21549307 9606 9606 BIOGRID
SMARCAD1 MTA2 Affinity Capture-MS 21549307 9606 9606 BIOGRID
SMARCAD1 E2F6 Affinity Capture-MS 21549307 9606 9606 BIOGRID
SMARCAD1 EHMT2 Affinity Capture-MS 21549307 9606 9606 BIOGRID
SMARCAD1 YY1 Affinity Capture-MS 21549307 9606 9606 BIOGRID
SMARCAD1 L3MBTL2 Affinity Capture-MS 21549307 9606 9606 BIOGRID
SMARCAD1 DMAP1 Affinity Capture-MS 21549307 9606 9606 BIOGRID
SMARCAD1 EHMT1 Affinity Capture-MS 21549307 9606 9606 BIOGRID
SMARCAD1 PELP1 Affinity Capture-MS 21549307 9606 9606 BIOGRID
SMARCAD1 WIZ Affinity Capture-MS 21549307 9606 9606 BIOGRID
SMARCAD1 KDM1A Affinity Capture-MS 21549307 9606 9606 BIOGRID
SMARCAD1 CHD4 Affinity Capture-MS 21549307 9606 9606 BIOGRID
SMARCAD1 SIN3A Affinity Capture-MS 21549307 9606 9606 BIOGRID
SMARCAD1 XRCC6 Affinity Capture-MS 21549307 9606 9606 BIOGRID
SMARCAD1 PARP1 Affinity Capture-MS 21549307 9606 9606 BIOGRID
SMARCAD1 MSH2 Affinity Capture-MS 21549307 9606 9606 BIOGRID
SMARCAD1 XRCC5 Affinity Capture-MS 21549307 9606 9606 BIOGRID
SMARCAD1 RFC4 Affinity Capture-MS 21549307 9606 9606 BIOGRID
SMARCAD1 SMC1A Affinity Capture-MS 21549307 9606 9606 BIOGRID
SMARCAD1 RFC5 Affinity Capture-MS 21549307 9606 9606 BIOGRID
SMARCAD1 RFC3 Affinity Capture-MS 21549307 9606 9606 BIOGRID
SMARCAD1 RFC2 Affinity Capture-MS 21549307 9606 9606 BIOGRID
SMARCAD1 TOP2A Affinity Capture-MS 21549307 9606 9606 BIOGRID
SMARCAD1 SMC3 Affinity Capture-MS 21549307 9606 9606 BIOGRID
SMARCAD1 MSH3 Affinity Capture-MS 21549307 9606 9606 BIOGRID
SMARCAD1 PRKDC Affinity Capture-MS 21549307 9606 9606 BIOGRID
SMARCAD1 MSH6 Affinity Capture-MS 21549307 9606 9606 BIOGRID
SMARCAD1 RAD50 Affinity Capture-MS 21549307 9606 9606 BIOGRID
SMARCAD1 RUVBL2 Affinity Capture-MS 21549307 9606 9606 BIOGRID
SMARCAD1 RUVBL1 Affinity Capture-MS 21549307 9606 9606 BIOGRID
SMARCAD1 ACTL6A Affinity Capture-MS 21549307 9606 9606 BIOGRID
SMARCAD1 SMARCC2 Affinity Capture-MS 21549307 9606 9606 BIOGRID
SMARCAD1 SMARCA5 Affinity Capture-MS 21549307 9606 9606 BIOGRID
SMARCAD1 SMARCB1 Affinity Capture-MS 21549307 9606 9606 BIOGRID
SMARCAD1 SMARCE1 Affinity Capture-MS 21549307 9606 9606 BIOGRID
SMARCAD1 HELLS Affinity Capture-MS 21549307 9606 9606 BIOGRID
SMARCAD1 SMARCC1 Affinity Capture-MS 21549307 9606 9606 BIOGRID
SMARCAD1 SMARCA4 Affinity Capture-MS 21549307 9606 9606 BIOGRID
SMARCAD1 PBRM1 Affinity Capture-MS 21549307 9606 9606 BIOGRID
SMARCAD1 SMARCD2 Affinity Capture-MS 21549307 9606 9606 BIOGRID
SMARCAD1 SSRP1 Affinity Capture-MS 21549307 9606 9606 BIOGRID
SMARCAD1 BAZ1A Affinity Capture-MS 21549307 9606 9606 BIOGRID
SMARCAD1 SUPT16H Affinity Capture-MS 21549307 9606 9606 BIOGRID
SMARCAD1 ARID2 Affinity Capture-MS 21549307 9606 9606 BIOGRID
SMARCAD1 GTF3C4 Affinity Capture-MS 21549307 9606 9606 BIOGRID
SMARCAD1 GTF3C5 Affinity Capture-MS 21549307 9606 9606 BIOGRID
SMARCAD1 GTF3C3 Affinity Capture-MS 21549307 9606 9606 BIOGRID
SMARCAD1 GTF3C2 Affinity Capture-MS 21549307 9606 9606 BIOGRID
SMARCAD1 GTF3C1 Affinity Capture-MS 21549307 9606 9606 BIOGRID
SMARCAD1 DDX17 Affinity Capture-MS 21549307 9606 9606 BIOGRID
SMARCAD1 DDX5 Affinity Capture-MS 21549307 9606 9606 BIOGRID
SMARCAD1 ZNF8 Affinity Capture-MS 21549307 9606 9606 BIOGRID
SMARCAD1 ZNF649 Affinity Capture-MS 21549307 9606 9606 BIOGRID
SMARCAD1 ZNF566 Affinity Capture-MS 21549307 9606 9606 BIOGRID
SMARCAD1 ZNF460 Affinity Capture-MS 21549307 9606 9606 BIOGRID
SMARCAD1 RBAK Affinity Capture-MS 21549307 9606 9606 BIOGRID
SMARCAD1 ZNF829 Affinity Capture-MS 21549307 9606 9606 BIOGRID
SMARCAD1 ZNF689 Affinity Capture-MS 21549307 9606 9606 BIOGRID
SMARCAD1 ZNF324 Affinity Capture-MS 21549307 9606 9606 BIOGRID
SMARCAD1 ZNF302 Affinity Capture-MS 21549307 9606 9606 BIOGRID
SMARCAD1 ZC3H18 Affinity Capture-MS 21549307 9606 9606 BIOGRID
SMARCAD1 ZNF24 Affinity Capture-MS 21549307 9606 9606 BIOGRID
SMARCAD1 ZNF235 Affinity Capture-MS 21549307 9606 9606 BIOGRID
SMARCAD1 ANAPC7 Affinity Capture-MS 21549307 9606 9606 BIOGRID
SMARCAD1 CDC23 Affinity Capture-MS 21549307 9606 9606 BIOGRID
SMARCAD1 CDC16 Affinity Capture-MS 21549307 9606 9606 BIOGRID
SMARCAD1 ANAPC5 Affinity Capture-MS 21549307 9606 9606 BIOGRID
SMARCAD1 ANAPC1 Affinity Capture-MS 21549307 9606 9606 BIOGRID
SMARCAD1 ANAPC2 Affinity Capture-MS 21549307 9606 9606 BIOGRID
SMARCAD1 CDC27 Affinity Capture-MS 21549307 9606 9606 BIOGRID
SMARCAD1 DDX3X Affinity Capture-MS 21549307 9606 9606 BIOGRID
SMARCAD1 DDX19A Affinity Capture-MS 21549307 9606 9606 BIOGRID
SMARCAD1 DHX9 Affinity Capture-MS 21549307 9606 9606 BIOGRID
SMARCAD1 HNRNPK Affinity Capture-MS 21549307 9606 9606 BIOGRID
SMARCAD1 HNRNPH1 Affinity Capture-MS 21549307 9606 9606 BIOGRID
SMARCAD1 HNRNPM Affinity Capture-MS 21549307 9606 9606 BIOGRID
SMARCAD1 MATR3 Affinity Capture-MS 21549307 9606 9606 BIOGRID
SMARCAD1 NUMA1 Affinity Capture-MS 21549307 9606 9606 BIOGRID
SMARCAD1 PTBP1 Affinity Capture-MS 21549307 9606 9606 BIOGRID
SMARCAD1 FUBP3 Affinity Capture-MS 21549307 9606 9606 BIOGRID
SMARCAD1 CPSF3 Affinity Capture-MS 21549307 9606 9606 BIOGRID
SMARCAD1 KHDRBS1 Affinity Capture-MS 21549307 9606 9606 BIOGRID
SMARCAD1 HNRNPR Affinity Capture-MS 21549307 9606 9606 BIOGRID
SMARCAD1 DNAJA2 Affinity Capture-MS 21549307 9606 9606 BIOGRID
SMARCAD1 NR2F2 Affinity Capture-MS 21549307 9606 9606 BIOGRID
SMARCAD1 LAS1L Affinity Capture-MS 21549307 9606 9606 BIOGRID
SMARCAD1 TMPO Affinity Capture-MS 21549307 9606 9606 BIOGRID
SMARCAD1 PCBP1 Affinity Capture-MS 21549307 9606 9606 BIOGRID
SMARCAD1 HNRNPD Affinity Capture-MS 21549307 9606 9606 BIOGRID
SMARCAD1 NONO Affinity Capture-MS 21549307 9606 9606 BIOGRID
SMARCAD1 CPSF1 Affinity Capture-MS 21549307 9606 9606 BIOGRID
SMARCAD1 SRSF1 Affinity Capture-MS 21549307 9606 9606 BIOGRID
SMARCAD1 HNRNPU Affinity Capture-MS 21549307 9606 9606 BIOGRID
SMARCAD1 WDR18 Affinity Capture-MS 21549307 9606 9606 BIOGRID
SMARCAD1 HNRNPL Affinity Capture-MS 21549307 9606 9606 BIOGRID
SMARCAD1 POLR1E Affinity Capture-MS 21549307 9606 9606 BIOGRID
SMARCAD1 PRPF19 Affinity Capture-MS 21549307 9606 9606 BIOGRID
SMARCAD1 ILF3 Affinity Capture-MS 21549307 9606 9606 BIOGRID
SMARCAD1 SF3B3 Affinity Capture-MS 21549307 9606 9606 BIOGRID
SMARCAD1 LMNB1 Affinity Capture-MS 21549307 9606 9606 BIOGRID
SMARCAD1 CSNK2A1 Affinity Capture-MS 21549307 9606 9606 BIOGRID
SMARCAD1 U2AF2 Affinity Capture-MS 21549307 9606 9606 BIOGRID
SMARCAD1 CPSF2 Affinity Capture-MS 21549307 9606 9606 BIOGRID
SMARCAD1 USP7 Affinity Capture-MS 21549307 9606 9606 BIOGRID
SMARCAD1 SF3B2 Affinity Capture-MS 21549307 9606 9606 BIOGRID
SMARCAD1 WDR33 Affinity Capture-MS 21549307 9606 9606 BIOGRID
SMARCAD1 BEND3 Affinity Capture-MS 21549307 9606 9606 BIOGRID
SMARCAD1 SYMPK Affinity Capture-MS 21549307 9606 9606 BIOGRID
SMARCAD1 MDN1 Affinity Capture-MS 21549307 9606 9606 BIOGRID
SMARCAD1 HDAC1 Affinity Capture-Western 21549307 9606 9606 BIOGRID
SMARCAD1 HDAC2 Affinity Capture-Western 21549307 9606 9606 BIOGRID
SMARCAD1 EHMT2 Affinity Capture-Western 21549307 9606 9606 BIOGRID
SMARCAD1 PARP1 Affinity Capture-Western 21549307 9606 9606 BIOGRID
SMARCAD1 CBX3 Affinity Capture-Western 21549307 9606 9606 BIOGRID
SMARCAD1 PCNA Reconstituted Complex 21549307 9606 9606 BIOGRID
SMARCAD1 PCNA FRET 21549307 9606 9606 BIOGRID
SMARCAD1 RAB3GAP2 Co-fractionation 22863883 9606 9606 BIOGRID
SMARCAD1 ANP32A Co-fractionation 26344197 9606 9606 BIOGRID
SMARCAD1 TRIM28 Co-crystal Structure 31204252 9606 9606 BIOGRID
SMARCAD1 TRIM28 Affinity Capture-Western 31204252 9606 9606 BIOGRID
SMARCAD1 TRIM28 Reconstituted Complex 31204252 9606 9606 BIOGRID
SMARCAD1 MSH2 Affinity Capture-Western 31843968 9606 9606 BIOGRID
SMARCAD1 MLH1 Affinity Capture-Western 31843968 9606 9606 BIOGRID
 Annotation of SMARCAD1
 TCGA cancer survival map of SMARCAD1


Calculate the hazards ratio based on Cox PH Model.
Add the 95% CI as dotted line.
Reset Add The plot axis-x order will follow the list.


Calculate the hazards ratio based on Cox PH Model.
We use log2(TPM + 1) for log-scale.
All Add
Reset The plot is based on the datasets of list.


 Disease information of  SMARCAD1