TcoF overview
TcoF: SMARCB1
GeneID: 6603
Name: SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1
Ensembl: ENSG00000099956
Species: Human
Class: NA
Family: SWI/SNF
Disease: 11
Go term: 34
Pathway: 5
Hallmark: 2
Super Enhancer:

chr22:24114949-24139500

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Enhancer:

chr22:24109780-24110020 chr22:24123290-24123370 chr22:24123600-24124150 chr22:24448850-24451330 chr22:24180960-24181080 chr22:24237720-24238010 chr22:24057380-24059210 chr22:24314750-24315950 chr22:24037700-24038800 chr22:24038880-24039350 chr22:24105520-24106270 chr22:24108480-24109560 chr22:24180630-24180750 chr22:24143270-24145480 chr22:24180040-24180530 chr22:24180820-24180890 chr22:24134080-24135740 chr22:24528810-24530260 chr22:24016960-24018870 chr22:24026060-24028050 chr22:24091120-24092890 chr22:24163980-24165190 chr22:24463130-24464650 chr22:24464730-24466750 chr22:24309210-24309570 chr22:24316130-24316490 chr22:24106580-24106820 chr22:24106900-24106970 chr22:24138420-24139200 chr22:23955510-23955820 chr22:23955840-23956260 chr22:24039430-24040020 chr22:24078100-24078780 chr22:24687060-24688420 chr22:23932920-23935280 chr22:24179340-24179840 chr22:24145610-24147680 chr22:24107090-24107900 chr22:24137280-24138100 chr22:24170430-24172840 chr22:24373250-24373600 chr22:24383080-24384110 chr22:24454760-24455680 chr22:24455830-24456380 chr22:24456600-24458400 chr22:24602420-24604850 chr22:24605390-24606630 chr22:24666950-24669260 chr22:24678970-24679380 chr22:24680500-24682210 chr22:24684200-24686400 chr22:24132740-24133940 chr22:24788320-24789150 chr22:24200220-24202290 chr22:24359290-24361700 chr22:24043030-24043390 chr22:24379510-24381210 chr22:24481720-24483400 chr22:24485360-24487530 chr22:24515670-24517270 chr22:24108210-24108310 chr22:24175080-24175640 chr22:24250250-24251550 chr22:24432630-24434790 chr22:24434910-24436450 chr22:24538960-24539530 chr22:24577560-24579020 chr22:24983980-24984180 chr22:23524430-23526610 chr22:23533260-23535380 chr22:23842680-23843440 chr22:23858450-23858920 chr22:23859030-23859850 chr22:24720420-24722380 chr22:23526710-23527640 chr22:24035180-24035940 chr22:24106360-24106440 chr22:23952530-23952920 chr22:24040040-24040390 chr22:24040520-24041030 chr22:24046330-24047610 chr22:24047730-24049120 chr22:24049560-24051310

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Promoter:

chr22:24129118-24180195

False
 ChIP-seq based regulatory details of SMARCB1
select * from encode where Experiment_target='SMARCB1'
Sample ID Experiment target Biosample type Biosample term name GSM ID Tissue type Source
TcoF_00_30484 SMARCB1 cell line Hep G2 GSM1704017 Liver ChIP-Atlas
TcoF_00_40920 SMARCB1 cell line Hep-G2 GSM1704017 Liver ReMap
TcoF_00_30485 SMARCB1 cell line Hep G2 GSM1704018 Liver ChIP-Atlas
TcoF_00_31114 SMARCB1 cell line RWPE-1 GSM3140975 Prostate ChIP-Atlas
TcoF_00_31115 SMARCB1 cell line RWPE-1 GSM3140976 Prostate ChIP-Atlas
TcoF_00_30385 SMARCB1 cell line HeLa GSM601398 Uterus ChIP-Atlas
TcoF_00_30568 SMARCB1 cell line NCCIT GSM881709 Embryo ChIP-Atlas
TcoF_00_30569 SMARCB1 cell line NCCIT GSM881711 Embryo ChIP-Atlas
TcoF_00_30631 SMARCB1 cell line K-562 GSM935634 Bone Marrow ChIP-Atlas
TcoF_00_40064 SMARCB1 cell line K-562 GSM935634 Bone Marrow ReMap
TcoF_00_30632 SMARCB1 cell line HeLa GSM935635 Uterus ChIP-Atlas
TcoF_00_40057 SMARCB1 cell line HeLa-S3 GSM935635 Uterus ReMap
 Downstream target genes of SMARCB1
 Protein-protein interaction of SMARCB1
OFFICIAL_SYMBOL_A OFFICIAL_SYMBOL_B EXPERIMENTAL_SYSTEM PUBMED_ID ORGANISM_A_ID ORGANISM_B_ID SOURCE
SMARCB1 SMARCA2 Co-purification 11238380 9606 9606 BIOGRID
SMARCB1 SMARCA4 Co-purification 11238380 9606 9606 BIOGRID
SMARCB1 SMARCC1 Co-purification 11238380 9606 9606 BIOGRID
SMARCB1 SIN3A Co-purification 11238380 9606 9606 BIOGRID
SMARCB1 HDAC1 Co-purification 11238380 9606 9606 BIOGRID
SMARCB1 HDAC2 Co-purification 11238380 9606 9606 BIOGRID
SMARCB1 RBBP4 Co-purification 11238380 9606 9606 BIOGRID
SMARCB1 POLR2A Co-purification 11238380 9606 9606 BIOGRID
SMARCB1 MYC Two-hybrid 10319872 9606 9606 BIOGRID
SMARCB1 MYC Affinity Capture-Western 10319872 9606 9606 BIOGRID
SMARCB1 TP53 Reconstituted Complex 11950834 9606 9606 BIOGRID
SMARCB1 XPO1 Affinity Capture-Western 11782423 9606 9606 BIOGRID
SMARCB1 XPO1 Reconstituted Complex 11782423 9606 9606 BIOGRID
SMARCB1 RAN Reconstituted Complex 11782423 9606 9606 BIOGRID
SMARCB1 BRCA1 Co-purification 10943845 9606 9606 BIOGRID
SMARCB1 SMARCB1 Co-purification 10943845 9606 9606 BIOGRID
SMARCB1 SMARCA4 Co-fractionation 11486022 9606 9606 BIOGRID
SMARCB1 HSF1 Co-fractionation 11486022 9606 9606 BIOGRID
SMARCB1 SS18 Affinity Capture-Western 11734557 9606 9606 BIOGRID
SMARCB1 SS18 Affinity Capture-MS 11734557 9606 9606 BIOGRID
SMARCB1 ARID1A Affinity Capture-MS 11734557 9606 9606 BIOGRID
SMARCB1 ARID1B Affinity Capture-MS 11734557 9606 9606 BIOGRID
SMARCB1 ARID1A Co-purification 8895581 9606 9606 BIOGRID
SMARCB1 SMARCA4 Co-purification 8895581 9606 9606 BIOGRID
SMARCB1 SMARCA2 Co-purification 8895581 9606 9606 BIOGRID
SMARCB1 SMARCC2 Co-purification 8895581 9606 9606 BIOGRID
SMARCB1 SMARCC1 Co-purification 8895581 9606 9606 BIOGRID
SMARCB1 POLR2A Co-purification 8895581 9606 9606 BIOGRID
SMARCB1 SMARCE1 Co-purification 8895581 9606 9606 BIOGRID
SMARCB1 ACTL6A Co-purification 8895581 9606 9606 BIOGRID
SMARCB1 PPP1R15A Reconstituted Complex 10490642 9606 9606 BIOGRID
SMARCB1 PPP1CA Reconstituted Complex 12016208 9606 9606 BIOGRID
SMARCB1 PPP1CB Reconstituted Complex 12016208 9606 9606 BIOGRID
SMARCB1 PPP1CC Reconstituted Complex 12016208 9606 9606 BIOGRID
SMARCB1 PPP1CA Affinity Capture-Western 12016208 9606 9606 BIOGRID
SMARCB1 PPP1CB Affinity Capture-Western 12016208 9606 9606 BIOGRID
SMARCB1 PPP1CC Affinity Capture-Western 12016208 9606 9606 BIOGRID
SMARCB1 XPC Co-localization 19805520 9606 9606 BIOGRID
SMARCB1 ATM Affinity Capture-Western 19805520 9606 9606 BIOGRID
SMARCB1 KMT2C Reconstituted Complex 19221051 9606 9606 BIOGRID
SMARCB1 KMT2B Reconstituted Complex 19221051 9606 9606 BIOGRID
SMARCB1 KMT2C Two-hybrid 19221051 9606 9606 BIOGRID
SMARCB1 ARID1A Affinity Capture-Western 19650111 9606 9606 BIOGRID
SMARCB1 SMARCC2 Affinity Capture-Western 19650111 9606 9606 BIOGRID
SMARCB1 SMARCC1 Affinity Capture-Western 19650111 9606 9606 BIOGRID
SMARCB1 SMARCE1 Affinity Capture-Western 18809673 9606 9606 BIOGRID
SMARCB1 SMARCC1 Affinity Capture-Western 18809673 9606 9606 BIOGRID
SMARCB1 SMARCA4 Affinity Capture-Western 18809673 9606 9606 BIOGRID
SMARCB1 SMARCE1 Affinity Capture-MS 18809673 9606 9606 BIOGRID
SMARCB1 SMARCC1 Affinity Capture-MS 18809673 9606 9606 BIOGRID
SMARCB1 SMARCA4 Affinity Capture-MS 18809673 9606 9606 BIOGRID
SMARCB1 AKT1 Affinity Capture-Western 16568092 9606 9606 BIOGRID
SMARCB1 ACTA1 Affinity Capture-Western 16568092 9606 9606 BIOGRID
SMARCB1 SMARCC1 Affinity Capture-Western 16568092 9606 9606 BIOGRID
SMARCB1 AKT1 Reconstituted Complex 16568092 9606 9606 BIOGRID
SMARCB1 PRMT5 Reconstituted Complex 14559996 9606 9606 BIOGRID
SMARCB1 SMARCA4 Affinity Capture-Western 18414052 9606 9606 BIOGRID
SMARCB1 SMARCA4 Affinity Capture-Western 15150092 9606 9606 BIOGRID
SMARCB1 SMARCC1 Affinity Capture-Western 15150092 9606 9606 BIOGRID
SMARCB1 SMARCC2 Affinity Capture-Western 15150092 9606 9606 BIOGRID
SMARCB1 SMARCA4 Co-purification 9744861 9606 9606 BIOGRID
SMARCB1 SMARCA2 Co-purification 9744861 9606 9606 BIOGRID
SMARCB1 SMARCC1 Co-purification 9744861 9606 9606 BIOGRID
SMARCB1 RB1CC1 Affinity Capture-Western 20614030 9606 9606 BIOGRID
SMARCB1 SMARCA4 Affinity Capture-Western 20506188 9606 9606 BIOGRID
SMARCB1 RUNX1 Affinity Capture-Western 20506188 9606 9606 BIOGRID
SMARCB1 ARID2 Affinity Capture-Western 15985610 9606 9606 BIOGRID
SMARCB1 SMARCA4 Affinity Capture-Western 16687403 9606 9606 BIOGRID
SMARCB1 CHFR Affinity Capture-Western 22285184 9606 9606 BIOGRID
SMARCB1 RB1CC1 Affinity Capture-Western 21637919 9606 9606 BIOGRID
SMARCB1 APP Reconstituted Complex 21832049 9606 9606 BIOGRID
SMARCB1 TOP2B Co-fractionation 22939629 9606 9606 BIOGRID
SMARCB1 VTN Co-fractionation 22939629 9606 9606 BIOGRID
SMARCB1 TRA2A Co-fractionation 22939629 9606 9606 BIOGRID
SMARCB1 SON Co-fractionation 22939629 9606 9606 BIOGRID
SMARCB1 SMARCB1 Reconstituted Complex 23861745 9606 9606 BIOGRID
SMARCB1 ACTL6A Co-fractionation 26344197 9606 9606 BIOGRID
SMARCB1 ARID1A Co-fractionation 26344197 9606 9606 BIOGRID
SMARCB1 ARID1B Co-fractionation 26344197 9606 9606 BIOGRID
SMARCB1 BCL7A Co-fractionation 26344197 9606 9606 BIOGRID
SMARCB1 BCL7B Co-fractionation 26344197 9606 9606 BIOGRID
SMARCB1 CHMP4A Co-fractionation 26344197 9606 9606 BIOGRID
SMARCB1 CPSF6 Co-fractionation 26344197 9606 9606 BIOGRID
SMARCB1 DPF2 Co-fractionation 26344197 9606 9606 BIOGRID
SMARCB1 DPF3 Co-fractionation 26344197 9606 9606 BIOGRID
SMARCB1 SMARCD1 Co-fractionation 26344197 9606 9606 BIOGRID
SMARCB1 SMARCD2 Co-fractionation 26344197 9606 9606 BIOGRID
SMARCB1 SMARCD3 Co-fractionation 26344197 9606 9606 BIOGRID
SMARCB1 SS18 Co-fractionation 26344197 9606 9606 BIOGRID
SMARCB1 TBL1X Co-fractionation 26344197 9606 9606 BIOGRID
SMARCB1 TBL1XR1 Co-fractionation 26344197 9606 9606 BIOGRID
SMARCB1 BRCA1 Affinity Capture-Western 27591253 9606 9606 BIOGRID
SMARCB1 BARD1 Affinity Capture-Western 27591253 9606 9606 BIOGRID
SMARCB1 VHL Negative Genetic 28319113 9606 9606 BIOGRID
SMARCB1 ABI2 Two-hybrid 27229929 9606 9606 BIOGRID
SMARCB1 AES Two-hybrid 27229929 9606 9606 BIOGRID
SMARCB1 ARL11 Two-hybrid 27229929 9606 9606 BIOGRID
SMARCB1 ATP5A1 Two-hybrid 27229929 9606 9606 BIOGRID
SMARCB1 DPH6 Two-hybrid 27229929 9606 9606 BIOGRID
SMARCB1 BHLHE40 Two-hybrid 27229929 9606 9606 BIOGRID
SMARCB1 BLZF1 Two-hybrid 27229929 9606 9606 BIOGRID
SMARCB1 FAM208B Two-hybrid 27229929 9606 9606 BIOGRID
SMARCB1 CAMK2D Two-hybrid 27229929 9606 9606 BIOGRID
SMARCB1 CCDC120 Two-hybrid 27229929 9606 9606 BIOGRID
SMARCB1 CCDC33 Two-hybrid 27229929 9606 9606 BIOGRID
SMARCB1 CCDC36 Two-hybrid 27229929 9606 9606 BIOGRID
SMARCB1 CD69 Two-hybrid 27229929 9606 9606 BIOGRID
SMARCB1 CDC23 Two-hybrid 27229929 9606 9606 BIOGRID
SMARCB1 CXCL11 Two-hybrid 27229929 9606 9606 BIOGRID
SMARCB1 CYB5D2 Two-hybrid 27229929 9606 9606 BIOGRID
SMARCB1 DNAJA3 Two-hybrid 27229929 9606 9606 BIOGRID
SMARCB1 FAM154A Two-hybrid 27229929 9606 9606 BIOGRID
SMARCB1 FAM9B Two-hybrid 27229929 9606 9606 BIOGRID
SMARCB1 GFAP Two-hybrid 27229929 9606 9606 BIOGRID
SMARCB1 GOLGA2 Two-hybrid 27229929 9606 9606 BIOGRID
SMARCB1 HNRNPM Two-hybrid 27229929 9606 9606 BIOGRID
SMARCB1 HOMEZ Two-hybrid 27229929 9606 9606 BIOGRID
SMARCB1 HOOK2 Two-hybrid 27229929 9606 9606 BIOGRID
SMARCB1 HSFY1 Two-hybrid 27229929 9606 9606 BIOGRID
SMARCB1 IKZF3 Two-hybrid 27229929 9606 9606 BIOGRID
SMARCB1 KCTD9 Two-hybrid 27229929 9606 9606 BIOGRID
SMARCB1 KLC3 Two-hybrid 27229929 9606 9606 BIOGRID
SMARCB1 KPNA6 Two-hybrid 27229929 9606 9606 BIOGRID
SMARCB1 KRT15 Two-hybrid 27229929 9606 9606 BIOGRID
SMARCB1 KRT19 Two-hybrid 27229929 9606 9606 BIOGRID
SMARCB1 KRT6A Two-hybrid 27229929 9606 9606 BIOGRID
SMARCB1 KRT6B Two-hybrid 27229929 9606 9606 BIOGRID
SMARCB1 KRT6C Two-hybrid 27229929 9606 9606 BIOGRID
SMARCB1 LDOC1 Two-hybrid 27229929 9606 9606 BIOGRID
SMARCB1 LENG8 Two-hybrid 27229929 9606 9606 BIOGRID
SMARCB1 LNX2 Two-hybrid 27229929 9606 9606 BIOGRID
SMARCB1 LY96 Two-hybrid 27229929 9606 9606 BIOGRID
SMARCB1 LZTS2 Two-hybrid 27229929 9606 9606 BIOGRID
SMARCB1 MBIP Two-hybrid 27229929 9606 9606 BIOGRID
SMARCB1 MIF4GD Two-hybrid 27229929 9606 9606 BIOGRID
SMARCB1 MXI1 Two-hybrid 27229929 9606 9606 BIOGRID
SMARCB1 NCK2 Two-hybrid 27229929 9606 9606 BIOGRID
SMARCB1 OSGIN1 Two-hybrid 27229929 9606 9606 BIOGRID
SMARCB1 OTX2 Two-hybrid 27229929 9606 9606 BIOGRID
SMARCB1 RINT1 Two-hybrid 27229929 9606 9606 BIOGRID
SMARCB1 RXRA Two-hybrid 27229929 9606 9606 BIOGRID
SMARCB1 SMARCB1 Two-hybrid 27229929 9606 9606 BIOGRID
SMARCB1 TEKT5 Two-hybrid 27229929 9606 9606 BIOGRID
SMARCB1 TFIP11 Two-hybrid 27229929 9606 9606 BIOGRID
SMARCB1 TNFAIP1 Two-hybrid 27229929 9606 9606 BIOGRID
SMARCB1 TNRC6A Two-hybrid 27229929 9606 9606 BIOGRID
SMARCB1 TRIM27 Two-hybrid 27229929 9606 9606 BIOGRID
SMARCB1 TSC22D4 Two-hybrid 27229929 9606 9606 BIOGRID
SMARCB1 VIM Two-hybrid 27229929 9606 9606 BIOGRID
SMARCB1 ZC3H11A Two-hybrid 27229929 9606 9606 BIOGRID
SMARCB1 ZNF398 Two-hybrid 27229929 9606 9606 BIOGRID
SMARCB1 CABIN1 Affinity Capture-Western 23602572 9606 9606 BIOGRID
SMARCB1 HIRA Affinity Capture-Western 23602572 9606 9606 BIOGRID
SMARCB1 SMARCA4 Affinity Capture-Western 23602572 9606 9606 BIOGRID
SMARCB1 UBN1 Affinity Capture-Western 23602572 9606 9606 BIOGRID
SMARCB1 ASF1A Affinity Capture-Western 23602572 9606 9606 BIOGRID
SMARCB1 RPN1 Two-hybrid 30178299 9606 9606 BIOGRID
SMARCB1 SMARCB1 Two-hybrid 30178299 9606 9606 BIOGRID
SMARCB1 WDR5 Negative Genetic 28481362 9606 9606 BIOGRID
SMARCB1 SRCAP Negative Genetic 28481362 9606 9606 BIOGRID
SMARCB1 SMARCA4 Affinity Capture-Western 29374058 9606 9606 BIOGRID
SMARCB1 SMARCC2 Affinity Capture-Western 29374058 9606 9606 BIOGRID
SMARCB1 SMARCB1 Affinity Capture-Western 29374058 9606 9606 BIOGRID
SMARCB1 PICK1 Two-hybrid 32296183 9606 9606 BIOGRID
SMARCB1 TRIM35 Two-hybrid 32296183 9606 9606 BIOGRID
SMARCB1 AES Two-hybrid 32296183 9606 9606 BIOGRID
SMARCB1 MESDC2 Two-hybrid 32296183 9606 9606 BIOGRID
SMARCB1 PRKAB2 Two-hybrid 32296183 9606 9606 BIOGRID
SMARCB1 SMARCC2 Two-hybrid 32296183 9606 9606 BIOGRID
SMARCB1 HSF2BP Two-hybrid 32296183 9606 9606 BIOGRID
SMARCB1 RUSC1 Two-hybrid 32296183 9606 9606 BIOGRID
SMARCB1 FAM90A1 Two-hybrid 32296183 9606 9606 BIOGRID
SMARCB1 IL16 Two-hybrid 32296183 9606 9606 BIOGRID
SMARCB1 FAM9B Two-hybrid 32296183 9606 9606 BIOGRID
SMARCB1 HGS Two-hybrid 32296183 9606 9606 BIOGRID
SMARCB1 MRPL53 Two-hybrid 32296183 9606 9606 BIOGRID
SMARCB1 ZNF688 Two-hybrid 32296183 9606 9606 BIOGRID
SMARCB1 SMARCC1 Affinity Capture-MS 24981860 9606 9606 BIOGRID
SMARCB1 SMARCD1 Affinity Capture-MS 24981860 9606 9606 BIOGRID
SMARCB1 BCL7C Affinity Capture-MS 24981860 9606 9606 BIOGRID
SMARCB1 SMARCD3 Affinity Capture-MS 24981860 9606 9606 BIOGRID
SMARCB1 SMARCA4 Affinity Capture-MS 24981860 9606 9606 BIOGRID
SMARCB1 ARID1B Affinity Capture-MS 24981860 9606 9606 BIOGRID
SMARCB1 BCL7A Affinity Capture-MS 24981860 9606 9606 BIOGRID
SMARCB1 BRD7 Affinity Capture-MS 24981860 9606 9606 BIOGRID
SMARCB1 SS18 Affinity Capture-MS 24981860 9606 9606 BIOGRID
SMARCB1 SS18L1 Affinity Capture-MS 24981860 9606 9606 BIOGRID
SMARCB1 PBRM1 Affinity Capture-MS 24981860 9606 9606 BIOGRID
SMARCB1 DPF1 Affinity Capture-MS 24981860 9606 9606 BIOGRID
SMARCB1 PHF10 Affinity Capture-MS 24981860 9606 9606 BIOGRID
SMARCB1 BRD9 Affinity Capture-MS 24981860 9606 9606 BIOGRID
SMARCB1 GLTSCR1 Affinity Capture-MS 24981860 9606 9606 BIOGRID
SMARCB1 ACTC1 Affinity Capture-MS 24981860 9606 9606 BIOGRID
SMARCB1 BCL7B Affinity Capture-MS 24981860 9606 9606 BIOGRID
SMARCB1 AMY1A Affinity Capture-MS 24981860 9606 9606 BIOGRID
SMARCB1 Myc Reconstituted Complex 10319872 9606 10090 BIOGRID
SMARCB1 tat Affinity Capture-Western 16889668 9606 11676 BIOGRID
SMARCB1 tat Reconstituted Complex 16687403 9606 11676 BIOGRID
SMARCB1 UL114 Reconstituted Complex 22479537 9606 10359 BIOGRID
SMARCB1 UL44 Affinity Capture-Western 22479537 9606 10359 BIOGRID
SMARCB1 UL44 Reconstituted Complex 22479537 9606 10359 BIOGRID
SMARCB1 tat Affinity Capture-Western 16601680 9606 11676 BIOGRID
 Annotation of SMARCB1
 TCGA cancer survival map of SMARCB1


Calculate the hazards ratio based on Cox PH Model.
Add the 95% CI as dotted line.
Reset Add The plot axis-x order will follow the list.


Calculate the hazards ratio based on Cox PH Model.
We use log2(TPM + 1) for log-scale.
All Add
Reset The plot is based on the datasets of list.


 Disease information of  SMARCB1