TcoF overview
| TcoF: | SMARCD2 | |
| GeneID: | 150572 | |
| Name: | SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 2 | |
| Ensembl: | ENSG00000108604 | |
| Species: | Human | |
| Class: | NA | |
| Family: | SWI/SNF | |
| Disease: | 7 | |
| Go term: | 9 | |
| Pathway: | 2 | |
| Hallmark: | -- | |
| Super Enhancer: |
chr17:61914636-61921273 chr17:61914006-61921767 chr17:61911504-61921166 chr17:61913989-61921490 chr17:61914206-61921263 chr17:61915016-61920137 chr17:61915405-61926916 chr17:61911690-61921347 chr17:61907641-61927511 |
|
| Enhancer: |
chr17:61628180-61630510 chr17:61758380-61759120 chr17:61917380-61919810 chr17:62333120-62335370 chr17:61512600-61513040 chr17:61911940-61912060 chr17:61912160-61912770 chr17:61710160-61712060 chr17:62141510-62142560 chr17:62144290-62145540 chr17:61838710-61840360 chr17:62007750-62008690 chr17:62008740-62009550 chr17:62023000-62024400 chr17:62026890-62028780 chr17:62038790-62041030 chr17:62075780-62076060 chr17:62223830-62224790 chr17:61837100-61837560 chr17:61914400-61914550 chr17:61914590-61914800 chr17:62300970-62302300 chr17:61700120-61702570 chr17:61914990-61917340 chr17:61513150-61513410 chr17:62036800-62038550 chr17:62230520-62232200 chr17:61958880-61959150 chr17:62226450-62228200 chr17:61782610-61783990 chr17:61827040-61829290 chr17:62133310-62135160 chr17:62043900-62045380 chr17:61678720-61680570 chr17:62095710-62097760 chr17:62205370-62207330 chr17:62169150-62169740 chr17:62180850-62182660 chr17:61958510-61958710 chr17:61910350-61910420 chr17:61910530-61910650 chr17:61910780-61910940 chr17:61911080-61911260 chr17:61911370-61911520 chr17:61911690-61911830 chr17:62135350-62137820 chr17:62157100-62158130 chr17:61358880-61359220 chr17:61366940-61369280 chr17:61369790-61371900 chr17:61430970-61432140 chr17:61433240-61434220 chr17:61434480-61436360 chr17:61457600-61459810 chr17:61476280-61478690 chr17:61478760-61481240 chr17:61508180-61509660 chr17:61575740-61577480 chr17:62232330-62234700 chr17:62279400-62281280 chr17:62289050-62289930 chr17:62305880-62306160 chr17:62306300-62307960 chr17:62313480-62315960 chr17:62317150-62319550 chr17:62321340-62323630 chr17:62490620-62492520 chr17:61471590-61473100 chr17:61411140-61413630 chr17:61830160-61831380 chr17:62160960-62162540 chr17:62379480-62381480 chr17:62392080-62393600 chr17:62394380-62396450 chr17:62403520-62405960 chr17:62568080-62570220 chr17:62191910-62194170 chr17:61857690-61858570 chr17:61864630-61866670 chr17:62162600-62163540 chr17:62164180-62166420 chr17:62171800-62172230 chr17:62234980-62237150 chr17:61791740-61792560 chr17:62082730-62083990 chr17:62229360-62230300 chr17:61554700-61555290 chr17:61869920-61870660 chr17:62194920-62196580 chr17:62277530-62278760 chr17:62326950-62328200 chr17:61897360-61897430 chr17:62267490-62268890 chr17:61616020-61618420 chr17:61788200-61790190 chr17:61800680-61801050 chr17:61829790-61830100 chr17:61833710-61833820 chr17:61799580-61800650 chr17:61754870-61755380 chr17:61899200-61899340 chr17:61757250-61757650 chr17:61759260-61759680 chr17:62254830-62256580 chr17:62257180-62258460 chr17:61750800-61751090 chr17:61505070-61507050 chr17:61454720-61457070 chr17:61914010-61914280 chr17:62022170-62022360 chr17:62022420-62022710 chr17:62024530-62025240 chr17:62025420-62025970 chr17:62026130-62026750 chr17:62034880-62035450 chr17:62042040-62042400 chr17:62041190-62041540 chr17:62076440-62078440 chr17:62078670-62078820 chr17:62081980-62082460 chr17:62078900-62079090 chr17:61898480-61898710 chr17:61899000-61899080 chr17:61912930-61914000 |
|
| Promoter: |
chr17:61909441-61920425 |
ChIP-seq based regulatory details of SMARCD2
| Sample ID | Experiment target | Biosample type | Biosample term name | GSM ID | Tissue type | Source |
|---|
Downstream target genes of SMARCD2
Upstream regulatory details of SMARCD2
Protein-protein interaction of SMARCD2
| OFFICIAL_SYMBOL_A | OFFICIAL_SYMBOL_B | EXPERIMENTAL_SYSTEM | PUBMED_ID | ORGANISM_A_ID | ORGANISM_B_ID | SOURCE |
|---|---|---|---|---|---|---|
| SMARCD2 | SMARCB1 | Co-fractionation | 22939629 | 9606 | 9606 | BIOGRID |
| SMARCD2 | TOP2B | Co-fractionation | 22939629 | 9606 | 9606 | BIOGRID |
| SMARCD2 | NOTCH2NL | Two-hybrid | 25416956 | 9606 | 9606 | BIOGRID |
| SMARCD2 | ACTL6A | Co-fractionation | 26344197 | 9606 | 9606 | BIOGRID |
| SMARCD2 | ARID1A | Co-fractionation | 26344197 | 9606 | 9606 | BIOGRID |
| SMARCD2 | ARID1B | Co-fractionation | 26344197 | 9606 | 9606 | BIOGRID |
| SMARCD2 | BCL7A | Co-fractionation | 26344197 | 9606 | 9606 | BIOGRID |
| SMARCD2 | DPF2 | Co-fractionation | 26344197 | 9606 | 9606 | BIOGRID |
| SMARCD2 | SMARCA4 | Co-fractionation | 26344197 | 9606 | 9606 | BIOGRID |
| SMARCD2 | SS18 | Co-fractionation | 26344197 | 9606 | 9606 | BIOGRID |
| SMARCD2 | TBL1XR1 | Co-fractionation | 26344197 | 9606 | 9606 | BIOGRID |
| SMARCD2 | UPF2 | Co-fractionation | 26344197 | 9606 | 9606 | BIOGRID |
| SMARCD2 | FANCA | Affinity Capture-Luminescence | 28215707 | 9606 | 9606 | BIOGRID |
| SMARCD2 | THAP3 | Positive Genetic | 28481362 | 9606 | 9606 | BIOGRID |
| SMARCD2 | DPF2 | Affinity Capture-MS | 24981860 | 9606 | 9606 | BIOGRID |
| SMARCD2 | SMARCB1 | Affinity Capture-MS | 24981860 | 9606 | 9606 | BIOGRID |
| SMARCD2 | SMARCE1 | Affinity Capture-MS | 24981860 | 9606 | 9606 | BIOGRID |
| SMARCD2 | BCL7C | Affinity Capture-MS | 24981860 | 9606 | 9606 | BIOGRID |
| SMARCD2 | SMARCD1 | Affinity Capture-MS | 24981860 | 9606 | 9606 | BIOGRID |
| SMARCD2 | SMARCC1 | Affinity Capture-MS | 24981860 | 9606 | 9606 | BIOGRID |
| SMARCD2 | SMARCA2 | Affinity Capture-MS | 24981860 | 9606 | 9606 | BIOGRID |
| SMARCD2 | ARID1A | Affinity Capture-MS | 24981860 | 9606 | 9606 | BIOGRID |
| SMARCD2 | SMARCC2 | Affinity Capture-MS | 24981860 | 9606 | 9606 | BIOGRID |
| SMARCD2 | SMARCD3 | Affinity Capture-MS | 24981860 | 9606 | 9606 | BIOGRID |
| SMARCD2 | SMARCA4 | Affinity Capture-MS | 24981860 | 9606 | 9606 | BIOGRID |
| SMARCD2 | ACTL6A | Affinity Capture-MS | 24981860 | 9606 | 9606 | BIOGRID |
| SMARCD2 | ARID1B | Affinity Capture-MS | 24981860 | 9606 | 9606 | BIOGRID |
| SMARCD2 | BCL7A | Affinity Capture-MS | 24981860 | 9606 | 9606 | BIOGRID |
| SMARCD2 | BRD7 | Affinity Capture-MS | 24981860 | 9606 | 9606 | BIOGRID |
| SMARCD2 | SS18L1 | Affinity Capture-MS | 24981860 | 9606 | 9606 | BIOGRID |
| SMARCD2 | SS18 | Affinity Capture-MS | 24981860 | 9606 | 9606 | BIOGRID |
| SMARCD2 | PBRM1 | Affinity Capture-MS | 24981860 | 9606 | 9606 | BIOGRID |
| SMARCD2 | ARID2 | Affinity Capture-MS | 24981860 | 9606 | 9606 | BIOGRID |
| SMARCD2 | DPF1 | Affinity Capture-MS | 24981860 | 9606 | 9606 | BIOGRID |
| SMARCD2 | DPF3 | Affinity Capture-MS | 24981860 | 9606 | 9606 | BIOGRID |
| SMARCD2 | PHF10 | Affinity Capture-MS | 24981860 | 9606 | 9606 | BIOGRID |
| SMARCD2 | BRD9 | Affinity Capture-MS | 24981860 | 9606 | 9606 | BIOGRID |
| SMARCD2 | GLTSCR1 | Affinity Capture-MS | 24981860 | 9606 | 9606 | BIOGRID |
| SMARCD2 | BCL7B | Affinity Capture-MS | 24981860 | 9606 | 9606 | BIOGRID |
| SMARCD2 | ACTC1 | Affinity Capture-MS | 24981860 | 9606 | 9606 | BIOGRID |
| SMARCD2 | STK11IP | Affinity Capture-MS | 24981860 | 9606 | 9606 | BIOGRID |
Annotation of SMARCD2
TCGA cancer survival map of SMARCD2
Expression of SMARCD2
Disease information of SMARCD2