TcoF overview
| TcoF: | SND1 | |
| GeneID: | 26039 | |
| Name: | Staphylococcal nuclease domain-containing protein 1 | |
| Ensembl: | ENSG00000197157 | |
| Species: | Human | |
| Class: | class 3 | |
| Family: | Others | |
| Disease: | 3 | |
| Go term: | 21 | |
| Pathway: | 2 | |
| Hallmark: | -- | |
| Super Enhancer: |
chr7:127318868-127325635 chr7:127322638-127325828 chr7:127522503-127559123 chr7:127448582-127501210 chr7:127305532-127326085 chr7:127524364-127554020 chr7:127290691-127326108 chr7:127504822-127544789 chr7:127513740-127531902 |
|
| Enhancer: |
chr7:127292510-127294960 chr7:127253150-127253500 chr7:127253590-127253800 chr7:127472690-127472960 chr7:127809200-127809710 chr7:127692120-127693540 chr7:127252060-127253070 chr7:127305740-127306640 chr7:127307500-127307910 chr7:127346960-127347610 chr7:127524370-127526860 chr7:127578250-127580630 chr7:127484480-127485590 chr7:127489770-127491260 chr7:127552750-127553680 chr7:127432630-127434940 chr7:127313930-127314340 chr7:127459540-127461790 chr7:127462160-127464080 chr7:127545400-127546180 chr7:127615330-127617220 chr7:127623870-127624380 chr7:127680990-127683250 chr7:127715360-127716910 chr7:127739200-127739780 chr7:127743230-127745200 chr7:127653650-127653990 chr7:127654460-127654750 chr7:127654790-127655400 chr7:127662220-127663920 chr7:127657200-127658860 chr7:127281670-127282570 chr7:127643040-127644290 chr7:127645540-127646260 chr7:127683860-127685500 chr7:127750460-127752270 chr7:127752370-127753390 chr7:127755060-127756680 chr7:127756800-127757550 chr7:127803430-127805720 chr7:127807800-127809040 chr7:127861380-127863560 chr7:128096080-128097250 chr7:128117230-128118620 chr7:127165970-127168070 chr7:127413160-127415650 chr7:127416570-127418210 chr7:127422060-127422540 chr7:127422630-127423410 chr7:127437000-127439340 chr7:127518850-127520350 chr7:127593840-127595750 chr7:127274620-127275540 chr7:127725830-127726980 chr7:127296400-127296690 |
|
| Promoter: |
chr7:127292248-127732661 |
ChIP-seq based regulatory details of SND1
| Sample ID | Experiment target | Biosample type | Biosample term name | GSM ID | Tissue type | Source |
|---|---|---|---|---|---|---|
| TcoF_00_21018 | SND1 | cell line | Mutu III | GSM1153765 | None | Cistrome |
| TcoF_00_20625 | SND1 | cell line | IB4 | GSM729851 | Blood | Cistrome |
| TcoF_00_40240 | SND1 | cell line | NHEK | GSM729851 | Skin | ReMap |
| TcoF_00_20624 | SND1 | cell line | IB4 | GSM729852 | Blood | Cistrome |
Downstream target genes of SND1
Upstream regulatory details of SND1
Protein-protein interaction of SND1
| OFFICIAL_SYMBOL_A | OFFICIAL_SYMBOL_B | EXPERIMENTAL_SYSTEM | PUBMED_ID | ORGANISM_A_ID | ORGANISM_B_ID | SOURCE |
|---|---|---|---|---|---|---|
| SND1 | STAT6 | Affinity Capture-Western | 12234934 | 9606 | 9606 | BIOGRID |
| SND1 | STAT6 | Reconstituted Complex | 12234934 | 9606 | 9606 | BIOGRID |
| SND1 | POLR2A | Affinity Capture-Western | 12234934 | 9606 | 9606 | BIOGRID |
| SND1 | STAT6 | Reconstituted Complex | 20225206 | 9606 | 9606 | BIOGRID |
| SND1 | STAT6 | Affinity Capture-Western | 20225206 | 9606 | 9606 | BIOGRID |
| SND1 | APP | Reconstituted Complex | 21832049 | 9606 | 9606 | BIOGRID |
| SND1 | TOMM22 | Co-fractionation | 22939629 | 9606 | 9606 | BIOGRID |
| SND1 | SMNDC1 | Co-fractionation | 22939629 | 9606 | 9606 | BIOGRID |
| SND1 | VDAC2 | Co-fractionation | 22939629 | 9606 | 9606 | BIOGRID |
| SND1 | SSR3 | Co-fractionation | 22939629 | 9606 | 9606 | BIOGRID |
| SND1 | G3BP1 | Reconstituted Complex | 20643132 | 9606 | 9606 | BIOGRID |
| SND1 | G3BP1 | Affinity Capture-Western | 20643132 | 9606 | 9606 | BIOGRID |
| SND1 | PRPF8 | Reconstituted Complex | 17632523 | 9606 | 9606 | BIOGRID |
| SND1 | RNU1-1 | Protein-RNA | 17632523 | 9606 | 9606 | BIOGRID |
| SND1 | RNU2-1 | Protein-RNA | 17632523 | 9606 | 9606 | BIOGRID |
| SND1 | RNU4-1 | Protein-RNA | 17632523 | 9606 | 9606 | BIOGRID |
| SND1 | RNU6-1 | Protein-RNA | 17632523 | 9606 | 9606 | BIOGRID |
| SND1 | RNU5A-1 | Protein-RNA | 17632523 | 9606 | 9606 | BIOGRID |
| SND1 | EIF3CL | Co-fractionation | 22863883 | 9606 | 9606 | BIOGRID |
| SND1 | HNRNPU | Co-fractionation | 22863883 | 9606 | 9606 | BIOGRID |
| SND1 | RPS11 | Co-fractionation | 22863883 | 9606 | 9606 | BIOGRID |
| SND1 | RPS2 | Co-fractionation | 22863883 | 9606 | 9606 | BIOGRID |
| SND1 | RPS6 | Co-fractionation | 22863883 | 9606 | 9606 | BIOGRID |
| SND1 | RPS9 | Co-fractionation | 22863883 | 9606 | 9606 | BIOGRID |
| SND1 | TDRD3 | Co-fractionation | 26344197 | 9606 | 9606 | BIOGRID |
| SND1 | TXNDC5 | Co-fractionation | 26344197 | 9606 | 9606 | BIOGRID |
| SND1 | TRAP1 | Affinity Capture-MS | 27173435 | 9606 | 9606 | BIOGRID |
| SND1 | EIF5B | Affinity Capture-MS | 27173435 | 9606 | 9606 | BIOGRID |
| SND1 | GPI | Affinity Capture-MS | 27173435 | 9606 | 9606 | BIOGRID |
| SND1 | PDIA3 | Affinity Capture-MS | 27173435 | 9606 | 9606 | BIOGRID |
| SND1 | CRNN | Affinity Capture-MS | 27173435 | 9606 | 9606 | BIOGRID |
| SND1 | PLS3 | Affinity Capture-MS | 27173435 | 9606 | 9606 | BIOGRID |
| SND1 | SRP68 | Affinity Capture-MS | 27173435 | 9606 | 9606 | BIOGRID |
| SND1 | AASS | Co-fractionation | 31536960 | 9606 | 9606 | BIOGRID |
| SND1 | MCFD2 | Co-fractionation | 31536960 | 9606 | 9606 | BIOGRID |
| SND1 | ALDH16A1 | Co-fractionation | 31536960 | 9606 | 9606 | BIOGRID |
| SND1 | BCL2L13 | Co-fractionation | 31536960 | 9606 | 9606 | BIOGRID |
| SND1 | CCT7 | Co-fractionation | 31536960 | 9606 | 9606 | BIOGRID |
| SND1 | CORO1C | Co-fractionation | 31536960 | 9606 | 9606 | BIOGRID |
| SND1 | GFM1 | Co-fractionation | 31536960 | 9606 | 9606 | BIOGRID |
| SND1 | PNPT1 | Co-fractionation | 31536960 | 9606 | 9606 | BIOGRID |
| SND1 | H2AFX | Affinity Capture-MS | 24981860 | 9606 | 9606 | BIOGRID |
| SND1 | MAX | Affinity Capture-MS | 24981860 | 9606 | 9606 | BIOGRID |
Annotation of SND1
TCGA cancer survival map of SND1
Expression of SND1
Disease information of SND1