TcoF overview
TcoF: VPS36
GeneID: 54904
Name: Vacuolar protein-sorting-associated protein 36
Ensembl: ENSG00000136100
Species: Human
Class: class 3
Family: Others
Disease: 0
Go term: 14
Pathway: 2
Hallmark: --
Super Enhancer:

chr13:53008071-53033432 chr13:53016601-53034765 chr13:53019751-53030465 chr13:53020217-53033833

Enhancer:

chr13:53227090-53227180 chr13:53030320-53030650 chr13:52967470-52968580 chr13:52731250-52733330 chr13:52766820-52767980 chr13:53021560-53024060 chr13:52921150-52921640 chr13:53239380-53239770 chr13:53143250-53145360 chr13:53205190-53206090 chr13:53196550-53198850 chr13:53233380-53235600 chr13:52880040-52881450 chr13:52955360-52956420 chr13:53200190-53201570 chr13:53310860-53313160 chr13:52739000-52741150 chr13:52954500-52955320 chr13:53275720-53277380 chr13:53412440-53413680 chr13:52921770-52924000 chr13:52929600-52931710 chr13:52932820-52934740 chr13:52945350-52946880 chr13:52978440-52980160 chr13:52569260-52571030 chr13:52599070-52601280 chr13:52659220-52660120 chr13:52926990-52927920 chr13:52939930-52941490 chr13:52777460-52779340 chr13:52678690-52679320 chr13:52850030-52852440 chr13:53030890-53031400 chr13:53191820-53194270 chr13:52990060-52990150 chr13:53020170-53020820 chr13:52918040-52920490 chr13:53001920-53003850 chr13:53454250-53455740 chr13:53361320-53362800 chr13:53083580-53084010 chr13:53084440-53085340 chr13:53087870-53088530 chr13:53227240-53229420 chr13:52985630-52986730

Promoter:

chr13:52986737-53024769

 ChIP-seq based regulatory details of VPS36
Sample ID Experiment target Biosample type Biosample term name GSM ID Tissue type Source
 Downstream target genes of VPS36
 Protein-protein interaction of VPS36
OFFICIAL_SYMBOL_A OFFICIAL_SYMBOL_B EXPERIMENTAL_SYSTEM PUBMED_ID ORGANISM_A_ID ORGANISM_B_ID SOURCE
VPS36 VPS25 Two-hybrid 16371348 9606 9606 BIOGRID
VPS36 SNF8 Two-hybrid 16371348 9606 9606 BIOGRID
VPS36 SNF8 Co-crystal Structure 18539118 9606 9606 BIOGRID
VPS36 VPS25 Co-crystal Structure 18539118 9606 9606 BIOGRID
VPS36 UBC Co-crystal Structure 17057716 9606 9606 BIOGRID
VPS36 UBC Reconstituted Complex 17057716 9606 9606 BIOGRID
VPS36 SNF8 Two-hybrid 16973552 9606 9606 BIOGRID
VPS36 VPS36 Two-hybrid 16973552 9606 9606 BIOGRID
VPS36 VPS25 Two-hybrid 16973552 9606 9606 BIOGRID
VPS36 TSG101 Two-hybrid 16973552 9606 9606 BIOGRID
VPS36 UBC Reconstituted Complex 16973552 9606 9606 BIOGRID
VPS36 CHMP6 Two-hybrid 14505570 9606 9606 BIOGRID
VPS36 TSG101 Two-hybrid 14505570 9606 9606 BIOGRID
VPS36 SPRY2 Two-hybrid 21543492 9606 9606 BIOGRID
VPS36 ZNHIT2 Co-fractionation 22939629 9606 9606 BIOGRID
VPS36 ATG7 Co-fractionation 22863883 9606 9606 BIOGRID
VPS36 PPP3CB Co-fractionation 22863883 9606 9606 BIOGRID
VPS36 SRSF5 Co-fractionation 22863883 9606 9606 BIOGRID
VPS36 WDR12 Co-fractionation 22863883 9606 9606 BIOGRID
VPS36 SNF8 Co-fractionation 26344197 9606 9606 BIOGRID
VPS36 TRMT61A Co-fractionation 26344197 9606 9606 BIOGRID
VPS36 VPS25 Co-fractionation 26344197 9606 9606 BIOGRID
VPS36 SNF8 Affinity Capture-MS 28514442 9606 9606 BIOGRID
VPS36 VPS25 Affinity Capture-MS 28514442 9606 9606 BIOGRID
VPS36 UBB Affinity Capture-MS 28514442 9606 9606 BIOGRID
VPS36 HERC1 Affinity Capture-MS 28514442 9606 9606 BIOGRID
VPS36 SNF8 Two-hybrid 32296183 9606 9606 BIOGRID
VPS36 VPS20 Two-hybrid 16371348 9606 559292 BIOGRID
 Annotation of VPS36
 TCGA cancer survival map of VPS36


Calculate the hazards ratio based on Cox PH Model.
Add the 95% CI as dotted line.
Reset Add The plot axis-x order will follow the list.


Calculate the hazards ratio based on Cox PH Model.
We use log2(TPM + 1) for log-scale.
All Add
Reset The plot is based on the datasets of list.


 Disease information of  VPS36