TcoF overview
| TcoF: | Cbx3 | |
| GeneID: | 12417 | |
| Name: | Chromobox protein homolog 3 | |
| Ensembl: | ENSMUSG00000029836 | |
| Species: | Mouse | |
| Class: | class HC | |
| Family: | Chromobox | |
| Disease: | -- | |
| Go-trem: | 22 | |
| Pathway: | 3 | |
| Super Enhancer: | chr6:51509548-51510444 chr6:51508563-51509488 chr6:51494346-51495178 chr6:51505248-51511874 chr6:51484528-51490250 chr6:51508734-51509424 chr6:51489547-51490482 chr6:51459969-51510552 chr6:51508610-51509376 chr6:51497733-51509519 chr6:51484195-51510357 chr6:51505199-51509568 chr6:51508704-51509532 chr6:51509317-51511548 chr6:51478929-51479882 chr6:51478883-51479806 chr6:51478848-51498309 |
|
| Enhancer: |
chr6:51195320-51197520 chr6:51218690-51219810 chr6:51278380-51291120 chr6:51402070-51406590 chr6:51406670-51407220 chr6:51408760-51410430 chr6:51411430-51411910 chr6:51413490-51414080 chr6:51414210-51414420 chr6:51414540-51415170 chr6:51415240-51416140 chr6:51416220-51416300 chr6:51416400-51416490 chr6:51416700-51416900 chr6:51417050-51417180 chr6:51420730-51421810 chr6:51421860-51425220 chr6:51412050-51413400 chr6:51718000-51718220 ps3:83063950-83064600 chr6:51417290-51419660 chr6:51418740-51419660 chr6:51420730-51421400 chr6:51418630-51419660 chr6:51420730-51421510 chr6:51605560-51607230 chr6:51420730-51421420 chr6:51024680-51028800 chr6:51057860-51059640 chr6:51165400-51166980 chr6:51418480-51419660 chr6:51421860-51422660 chr6:51329930-51330670 chr6:51418180-51419660 chr6:51329930-51330960 chr6:51350900-51352860 chr6:51421860-51422240 chr6:51792940-51804000 chr6:51329930-51330910 chr6:51383410-51384700 chr6:51421860-51422960 chr6:51605310-51609810 chr6:51674430-51690420 chr6:51774000-51776960 chr6:51700980-51708510 chr6:51345450-51345980 chr6:51421860-51424310 chr6:51418380-51419660 chr6:51420730-51421530 chr6:51418750-51419660 chr6:51421860-51423830 chr6:51412830-51413400 chr6:51391870-51392750 chr6:51417640-51419660 chr6:51606770-51608760 chr6:51418090-51419660 chr6:51418430-51419660 chr6:51420730-51421350 chr6:51329930-51333070 chr6:51383410-51385400 chr6:51219220-51219810 chr6:51329930-51330340 ps3:83302110-83302970 chr6:51569540-51570170 chr6:51329930-51330460 chr6:51418350-51419660 chr6:51421860-51422030 chr6:51329930-51330740 chr6:51418420-51419660 chr6:51421860-51423990 chr6:51329930-51330160 chr6:51340290-51340810 chr6:51418230-51419660 chr6:51420730-51421790 chr6:51428590-51431120 chr6:51421860-51423490 chr6:51429000-51429770 ps3:83683460-83684040 chr6:51418510-51419660 chr6:51420730-51421080 chr6:51553480-51554700 chr6:51585700-51587440 chr6:51417620-51419660 chr6:51421860-51422590 chr6:51408900-51410430 chr6:51418440-51419660 chr6:51420730-51421780 chr6:51166350-51166920 chr6:51278220-51286370 chr6:51329930-51330650 chr6:51405800-51406590 chr6:51417720-51419660 chr6:51651180-51651880 chr6:51307820-51308300 chr6:51418790-51419660 ps3:83302140-83302980 chr6:51283810-51284330 chr6:51329930-51330140 chr6:51349140-51349830 chr6:51383410-51383570 chr6:51418340-51419660 chr6:51421860-51422090 chr6:51554680-51555380 chr6:51605760-51609220 chr6:51664960-51665670 chr6:51420730-51421360 chr6:51401830-51406590 chr6:51383410-51384150 chr6:51420730-51421440 chr6:51165360-51167020 chr6:51258230-51260400 chr6:51329930-51332600 chr6:51418640-51419660 chr6:50873830-50875350 chr6:50890770-50893110 chr6:50918830-50920540 chr6:50928100-50929010 chr6:50929640-50937210 chr6:50942710-50945200 chr6:50951900-50953590 chr6:50954910-50957460 chr6:50988790-50989790 chr6:51001780-51003150 chr6:51010270-51011550 chr6:51025870-51029300 chr6:51079030-51080190 chr6:51334380-51334690 chr6:51340290-51341350 chr6:51349140-51349770 chr6:51383410-51383960 chr6:51418540-51419660 chr6:51420730-51421550 chr6:51421860-51422610 chr6:51608140-51608950 chr6:51630160-51631100 chr6:51665090-51665900 chr6:51717670-51718570 chr6:51758030-51760270 chr6:51798700-51800030 chr6:51801410-51801930 chr6:51830770-51831750 chr6:51955800-51958000 chr6:52003450-52004090 chr6:51019710-51020890 chr6:51069670-51070030 chr6:51657980-51660130 ps3:83571150-83572810 chr6:51233980-51235880 chr6:51283280-51285750 chr6:51310870-51312130 chr6:51329930-51330100 chr6:51340290-51341240 chr6:51418240-51419660 chr6:51420730-51421520 chr6:51421860-51423410 chr6:51428760-51429480 chr6:51166500-51166730 chr6:51329930-51330090 chr6:51349140-51349780 chr6:51418300-51419660 chr6:51421920-51422550 chr6:51582960-51584290 chr6:51383410-51384080 chr6:51417990-51419660 chr6:51578840-51586940 chr6:51418470-51419660 chr6:51057820-51059780 chr6:51276640-51291570 chr6:51329930-51331970 chr6:51405760-51406590 chr6:51421860-51424670 chr6:51208300-51208730 chr6:51329930-51330710 chr6:51345230-51346840 chr6:51353530-51355980 chr6:51402210-51406590 chr6:51421860-51424540 chr6:51428590-51431720 chr6:51417660-51419660 chr6:51417560-51419660 chr6:51421860-51422440 chr6:51329930-51330580 chr6:51418260-51419660 chr6:51421860-51423480 chr6:51329930-51330130 chr6:51421860-51422600 chr6:51165570-51166890 chr6:51418070-51419660 chr6:51418770-51419660 chr6:51420730-51421430 chr6:51418710-51419660 chr6:51413090-51413400 chr6:51418000-51419660 chr6:51420730-51421640 chr6:51553660-51554160 chr6:51418410-51419660 chr6:51420730-51421680 chr6:51165380-51167000 chr6:51258230-51259120 chr6:51418700-51419660 chr6:51420730-51421470 chr6:51415100-51415170 chr6:51418760-51419660 chr6:51418450-51419660 chr6:51420730-51421450 chr6:51349140-51349570 chr6:51383410-51384260 chr6:51420730-51421490 chr6:51420730-51421390 chr6:51420730-51421480 chr6:51421860-51425060 chr6:51311250-51312190 chr6:51391720-51392810 chr6:51418660-51419660 chr6:51166160-51166950 chr6:51282710-51284880 chr6:51401860-51406590 chr6:51418720-51419660 chr6:51420730-51421500 chr6:51165370-51167220 chr6:51417370-51419660 chr6:51345430-51346010 chr6:51349140-51349790 chr6:51351190-51351630 chr6:51392280-51392490 chr6:51408830-51410430 chr6:51418590-51419660 |
|
| Promoter: |
chr6:51468615-51472615 |
ChIP-seq based regulatory details of Cbx3
| Sample ID | Experiment target | Biosample term name | Cell type | Tissue type | Source |
|---|---|---|---|---|---|
| TcoF_01_30092 | Cbx3 | Embryonic Stem Cells | Pluripotent stem cell | None | ChIP_Atlas |
| TcoF_01_30091 | Cbx3 | Embryonic Stem Cells | Pluripotent stem cell | None | ChIP_Atlas |
| TcoF_01_30090 | Cbx3 | Embryonic Stem Cells | Pluripotent stem cell | None | ChIP_Atlas |
| TcoF_01_30089 | Cbx3 | Embryonic Stem Cells | Pluripotent stem cell | None | ChIP_Atlas |
| TcoF_01_30088 | Cbx3 | Embryonic Stem Cells | Pluripotent stem cell | None | ChIP_Atlas |
| TcoF_01_30085 | Cbx3 | Embryonic Stem Cells | Pluripotent stem cell | None | ChIP_Atlas |
| TcoF_01_30084 | Cbx3 | Embryonic Stem Cells | Pluripotent stem cell | None | ChIP_Atlas |
| TcoF_01_30083 | Cbx3 | Embryonic Stem Cells | Pluripotent stem cell | None | ChIP_Atlas |
| TcoF_01_20619 | Cbx3 | None | Neuronal Progenitor cell | None | Cistrome |
| TcoF_01_20616 | Cbx3 | None | Neuronal Progenitor cell | None | Cistrome |
| TcoF_01_20145 | Cbx3 | None | Embryonic Stem Cell | Embryo | Cistrome |
Downstream target genes of Cbx3
Protein-protein interaction of Cbx3
| OFFICIAL_SYMBOL_A | OFFICIAL_SYMBOL_B | EXPERIMENTAL_SYSTEM | PUBMED_ID | ORGANISM_A_ID | ORGANISM_B_ID | SOURCE |
|---|---|---|---|---|---|---|
| Cbx3 | Bahd1 | Co-localization | 19666599 | 10090 | 10090 | BIOGRID |
| Cbx3 | Trim66 | Reconstituted Complex | 15322135 | 10090 | 10090 | BIOGRID |
| Cbx3 | Trim66 | Affinity Capture-Western | 15322135 | 10090 | 10090 | BIOGRID |
| Cbx3 | Trim28 | Affinity Capture-Western | 10562550 | 10090 | 10090 | BIOGRID |
| Cbx3 | Hist3 | Protein-peptide | 16127177 | 10090 | 10090 | BIOGRID |
| Cbx3 | Hist1h1e | Protein-peptide | 16127177 | 10090 | 10090 | BIOGRID |
| Cbx3 | Trim28 | Reconstituted Complex | 10562550 | 10090 | 10090 | BIOGRID |
| Cbx3 | Trim24 | Reconstituted Complex | 10562550 | 10090 | 10090 | BIOGRID |
| Cbx3 | HDAC1 | Reconstituted Complex | 12242305 | 10090 | 9606 | BIOGRID |
| Cbx3 | HDAC4 | Reconstituted Complex | 12242305 | 10090 | 9606 | BIOGRID |
| Cbx3 | HDAC5 | Reconstituted Complex | 12242305 | 10090 | 9606 | BIOGRID |
| Cbx3 | Hdac9 | Reconstituted Complex | 12242305 | 10090 | 10090 | BIOGRID |
| Cbx3 | MKI67 | Reconstituted Complex | 11793364 | 10090 | 9606 | BIOGRID |
| Cbx3 | Suv39h1 | Affinity Capture-Western | 28059589 | 10090 | 10090 | BIOGRID |
| Cbx3 | Srrt | Co-fractionation | 32325033 | 10090 | 10090 | BIOGRID |
| Cbx3 | Wdr11 | Co-fractionation | 32325033 | 10090 | 10090 | BIOGRID |
| Cbx3 | SOX2 | Reconstituted Complex | 31077711 | 10090 | 9606 | BIOGRID |
| Cbx3 | Sox2 | Reconstituted Complex | 31077711 | 10090 | 10090 | BIOGRID |
| Cbx3 | Adnp | Affinity Capture-MS | 29795351 | 10090 | 10090 | BIOGRID |
| Cbx3 | Chd4 | Affinity Capture-MS | 29795351 | 10090 | 10090 | BIOGRID |
| Cbx3 | Trim28 | Affinity Capture-MS | 29795351 | 10090 | 10090 | BIOGRID |
| Cbx3 | Zfp518b | Affinity Capture-MS | 29795351 | 10090 | 10090 | BIOGRID |
| Cbx3 | Pogz | Affinity Capture-MS | 29795351 | 10090 | 10090 | BIOGRID |
| Cbx3 | Champ1 | Affinity Capture-MS | 29795351 | 10090 | 10090 | BIOGRID |
| Cbx3 | Lrif1 | Affinity Capture-MS | 29795351 | 10090 | 10090 | BIOGRID |
| Cbx3 | Rlf | Affinity Capture-MS | 29795351 | 10090 | 10090 | BIOGRID |
| Cbx3 | 2410141K09Rik | Affinity Capture-MS | 29795351 | 10090 | 10090 | BIOGRID |
| Cbx3 | Zfp280d | Affinity Capture-MS | 29795351 | 10090 | 10090 | BIOGRID |
| Cbx3 | Zfp280c | Affinity Capture-MS | 29795351 | 10090 | 10090 | BIOGRID |
| Cbx3 | Mis18bp1 | Affinity Capture-MS | 29795351 | 10090 | 10090 | BIOGRID |
| Cbx3 | Hnrnpf | Affinity Capture-MS | 29795351 | 10090 | 10090 | BIOGRID |
| Cbx3 | Ehmt2 | Affinity Capture-MS | 29795351 | 10090 | 10090 | BIOGRID |
| Cbx3 | Ehmt1 | Affinity Capture-MS | 29795351 | 10090 | 10090 | BIOGRID |
| Cbx3 | Zmym3 | Affinity Capture-MS | 29795351 | 10090 | 10090 | BIOGRID |
| Cbx3 | Pcgf6 | Affinity Capture-MS | 29795351 | 10090 | 10090 | BIOGRID |
| Cbx3 | Cbx5 | Affinity Capture-MS | 29795351 | 10090 | 10090 | BIOGRID |
| Cbx3 | Wiz | Affinity Capture-MS | 29795351 | 10090 | 10090 | BIOGRID |
| Cbx3 | H2-Ke6 | Affinity Capture-MS | 29795351 | 10090 | 10090 | BIOGRID |
| Cbx3 | L3mbtl2 | Affinity Capture-MS | 29795351 | 10090 | 10090 | BIOGRID |
| Cbx3 | Rps11 | Affinity Capture-MS | 29795351 | 10090 | 10090 | BIOGRID |
| Cbx3 | Prdm10 | Affinity Capture-MS | 29795351 | 10090 | 10090 | BIOGRID |
| Cbx3 | Adnp2 | Affinity Capture-MS | 29795351 | 10090 | 10090 | BIOGRID |
| Cbx3 | Cbx1 | Affinity Capture-MS | 29795351 | 10090 | 10090 | BIOGRID |
| Cbx3 | Zfp292 | Affinity Capture-MS | 29795351 | 10090 | 10090 | BIOGRID |
| Cbx3 | Hist1h3d | Affinity Capture-MS | 29795351 | 10090 | 10090 | BIOGRID |
| Cbx3 | Tubb5 | Affinity Capture-MS | 29795351 | 10090 | 10090 | BIOGRID |
| Cbx3 | Tfdp1 | Affinity Capture-MS | 29795351 | 10090 | 10090 | BIOGRID |
| Cbx3 | Zmym4 | Affinity Capture-MS | 29795351 | 10090 | 10090 | BIOGRID |
| Cbx3 | Zfp462 | Affinity Capture-MS | 29795351 | 10090 | 10090 | BIOGRID |
| Cbx3 | Mga | Affinity Capture-MS | 29795351 | 10090 | 10090 | BIOGRID |
| Cbx3 | E2f6 | Affinity Capture-MS | 29795351 | 10090 | 10090 | BIOGRID |
| Cbx3 | Hist1h2bb | Affinity Capture-MS | 29795351 | 10090 | 10090 | BIOGRID |
| Cbx3 | Max | Affinity Capture-MS | 29795351 | 10090 | 10090 | BIOGRID |
| Cbx3 | Ran | Affinity Capture-MS | 29795351 | 10090 | 10090 | BIOGRID |
| Cbx3 | Hnrnpu | Affinity Capture-MS | 29795351 | 10090 | 10090 | BIOGRID |
| Cbx3 | Slc25a5 | Affinity Capture-MS | 29795351 | 10090 | 10090 | BIOGRID |
| Cbx3 | Rpl24 | Affinity Capture-MS | 29795351 | 10090 | 10090 | BIOGRID |
| Cbx3 | Suv39h1 | Affinity Capture-MS | 29795351 | 10090 | 10090 | BIOGRID |
| Cbx3 | Zmym2 | Affinity Capture-MS | 29795351 | 10090 | 10090 | BIOGRID |
| Cbx3 | Hspa8 | Affinity Capture-MS | 29795351 | 10090 | 10090 | BIOGRID |
| Cbx3 | Ahdc1 | Affinity Capture-MS | 29795351 | 10090 | 10090 | BIOGRID |
| Cbx3 | Vim | Affinity Capture-MS | 29795351 | 10090 | 10090 | BIOGRID |
| Cbx3 | Glyr1 | Affinity Capture-MS | 29795351 | 10090 | 10090 | BIOGRID |
| Cbx3 | Rpl17 | Affinity Capture-MS | 29795351 | 10090 | 10090 | BIOGRID |
| Cbx3 | Rps24 | Affinity Capture-MS | 29795351 | 10090 | 10090 | BIOGRID |
| Cbx3 | Zfp518a | Affinity Capture-MS | 29795351 | 10090 | 10090 | BIOGRID |
| Cbx3 | Tuba1b | Affinity Capture-MS | 29795351 | 10090 | 10090 | BIOGRID |
| Cbx3 | Rpl10 | Affinity Capture-MS | 29795351 | 10090 | 10090 | BIOGRID |
| Cbx3 | Erh | Affinity Capture-MS | 29795351 | 10090 | 10090 | BIOGRID |
| Cbx3 | Hnrnpa1 | Affinity Capture-MS | 29795351 | 10090 | 10090 | BIOGRID |
| Cbx3 | Adnp | Co-localization | 29795351 | 10090 | 10090 | BIOGRID |
Annotation of Cbx3
Expression of Cbx3
Disease information of Cbx3