TcoF overview
TcoF: Cdk9
GeneID: 107951
Name: Cyclin-dependent kinase 9
Ensembl: ENSMUSG00000009555
Species: Mouse
Class: NA
Family: Cyclin
Disease: --
Go-trem: 40
Pathway: 25
Super Enhancer:

chr2:32701818-32704603 chr2:32701754-32705559 chr2:32703384-32705418 chr2:32699756-32705775 chr2:32703129-32706774 chr2:32703155-32704323 chr2:32701167-32704784 chr2:32704346-32704717

Enhancer:

chr2:31805900-31806040 chr2:31886820-31888720 chr2:31891780-31893620 chr2:32100100-32101060 chr2:32101630-32103050 chr2:32109410-32109790 chr2:32111730-32112130 chr2:32113930-32114090 chr2:32114180-32115090 chr2:32115250-32115420 chr2:32143160-32143400 chr2:32170000-32170400 chr2:32170580-32170850 chr2:32170860-32171310 chr2:32171430-32172410 chr2:32172520-32173780 chr2:32173860-32173970 chr2:32174080-32176020 chr2:32176140-32178900 chr2:32179820-32183480 chr2:32183560-32187000 chr2:32196080-32196350 chr2:32203170-32208560 chr2:32219170-32219320 chr2:32219490-32219730 chr2:32233150-32233480 chr2:32233830-32234620 chr2:32240400-32240930 chr2:32241560-32242540 chr2:32252070-32253050 chr2:32268830-32270000 chr2:32273390-32274560 chr2:32274720-32275820 chr2:32275930-32276170 chr2:32276910-32276990 chr2:32277110-32279310 chr2:32279580-32286040 chr2:32290550-32297270 chr2:32302490-32305970 chr2:32354000-32356200 chr2:32369220-32370760 chr2:32391750-32398420 chr2:32400130-32413540 chr2:32426810-32427810 chr2:32427910-32428470 chr2:32479250-32480950 chr2:32481050-32483900 chr2:32484000-32485010 chr2:32485130-32485360 chr2:32485400-32485750 chr2:32485910-32486590 chr2:32534930-32535800 chr2:32535850-32536710 chr2:32548240-32549500 chr2:32559690-32561300 chr2:32566080-32567550 chr2:32567630-32568080 chr2:32631410-32631820 chr2:32632040-32632220 chr2:32632320-32632500 chr2:32632540-32632640 chr2:32645150-32648980 chr2:32731920-32761280 chr2:32775120-32775220 chr2:32775380-32776470 chr2:32778670-32778950 chr2:32782420-32783500 chr2:32785220-32786080 chr2:32815130-32816560 chr2:32817350-32817560 chr2:32817640-32818090 chr2:32818190-32818500 chr2:32818580-32818820 chr2:32818930-32819010 chr2:32819100-32819260 chr2:32819370-32819510 chr2:33014550-33022480 chr2:33093550-33097710 chr2:33097910-33099190 chr2:33099460-33101600 chr2:33103230-33111380 chr2:33123280-33129080 chr2:33153900-33161350 chr2:33283740-33286750 chr2:33320490-33323950 chr2:32276210-32276820 chr2:32308460-32310310 chr2:32784250-32785090 chr2:32112180-32113600 chr2:32272770-32272860 chr2:32272970-32273240 chr2:32391750-32396680 chr2:32404610-32406000 chr2:32474120-32474850 chr2:32477390-32480950 chr2:32481050-32483190 chr2:32483330-32483900 chr2:32548550-32549500 chr2:32566540-32567550 chr2:32731920-32741050 chr2:32785220-32785670 chr2:32391750-32391950 chr2:32549300-32549500 chr2:32567410-32567550 chr2:32480700-32480950 chr2:32481050-32481730 chr2:32606320-32606470 chr2:32751160-32751460 chr2:32752060-32752550 chr2:32701640-32702570 chr2:32142580-32143110 chr2:32252070-32252950 chr2:32480740-32480950 chr2:32481050-32481360 chr2:32731920-32733820 chr2:32736320-32737550 chr2:32769580-32771390 chr2:32817640-32818080 chr2:32701650-32702570 chr2:32360930-32380870 chr2:32402040-32413540 chr2:32577220-32578260 chr2:32769780-32774510 chr2:32347370-32353120 chr2:32396290-32398420 chr2:32567660-32568080 chr2:32633110-32633340 chr2:32633530-32633630 chr2:32633800-32634460 chr2:32786380-32787610 chr2:32347180-32353390 chr2:32391750-32395560 chr2:32395700-32398420 chr2:32567350-32567550 chr2:32689980-32690750 chr2:32347290-32353240 chr2:32548330-32549500 chr2:32279580-32281130 chr2:32282850-32286040 chr2:32286670-32288400 chr2:32305280-32305970 chr2:32431410-32432170 chr2:32663580-32664620 chr2:32664720-32666620 chr2:32666750-32667540 chr2:32670540-32672800 chr2:32672900-32673940 chr2:32731920-32738920 chr2:32815730-32816560 chr2:32835620-32836880 chr2:32835070-32835520 chr2:32196420-32208560 chr2:32219850-32220230 chr2:32279580-32280820 chr2:32283050-32286040 chr2:32286670-32288470 chr2:32305550-32305970 chr2:32391750-32395620 chr2:32426810-32427800 chr2:32479450-32480950 chr2:32547720-32547970 chr2:32548020-32548110 chr2:32566710-32567550 chr2:32615220-32615880 chr2:32623620-32624360 chr2:32624500-32624610 chr2:32624860-32625570 chr2:32625780-32627400 chr2:32630070-32630310 chr2:32639080-32639740 chr2:32679100-32686440 chr2:32688910-32693120 chr2:32731920-32739020 chr2:32749860-32756230 chr2:32769040-32771890 chr2:32785220-32785600 chr2:32815860-32816560 chr2:32818190-32818370 chr2:32835950-32836880 chr2:32408960-32410160 chr2:32481600-32482150 chr2:32548610-32549500 chr2:32565720-32565990 chr2:32566800-32567550 chr2:32679100-32680710 chr2:32749580-32750230 chr2:32773080-32773570 chr2:32701490-32702570 chr2:32737000-32738660 chr2:32748890-32750130 chr2:32772720-32773730 chr2:32565130-32565290 chr2:32742370-32761280 chr2:32774620-32775010 chr2:32776660-32777580 chr2:32777740-32778070 chr2:32778190-32778370 chr2:32778480-32778560 chr2:32785220-32785770 chr2:32279580-32280710 chr2:32391750-32394600 chr2:32479670-32480950 chr2:32546770-32547970 chr2:32731920-32737590 chr2:32786390-32787610 chr2:32787700-32788960 chr2:32548740-32549500 chr2:32631410-32631680 chr2:32483220-32483900 chr2:32252070-32252300 chr2:32278210-32279310 chr2:32279580-32280700 chr2:32364440-32366160 chr2:32391750-32395890 chr2:32479480-32480950 chr2:32535410-32535800 chr2:32731920-32741310 chr2:32700990-32702570 chr2:32219850-32220290 chr2:32391750-32395540 chr2:32479880-32480950 chr2:32548570-32549500 chr2:32567190-32567550 chr2:32391750-32392520 chr2:32415670-32416450 chr2:32480250-32480950 chr2:32481050-32481760 chr2:32731920-32733860 chr2:32252070-32252450 chr2:32263810-32265360 chr2:32278460-32279310 chr2:32279580-32280740 chr2:32286670-32287410 chr2:32364900-32366250 chr2:32391750-32392020 chr2:32479860-32480950 chr2:32481050-32482030 chr2:32548990-32549500 chr2:32567020-32567550 chr2:32731920-32733000 chr2:32768360-32774510 chr2:32775380-32775710 chr2:32176140-32178010 chr2:32308460-32308700 chr2:32702260-32702570 chr2:31909940-31914830 chr2:32113700-32113790 chr2:32141970-32143110 chr2:32219850-32220600 chr2:32253250-32253700 chr2:32275490-32275820 chr2:32279580-32281490 chr2:32304840-32305970 chr2:32347330-32353060 chr2:32391750-32395610 chr2:32479510-32480950 chr2:32565460-32565560 chr2:32835880-32836880 chr2:32219850-32220390 chr2:32253250-32253680 chr2:32279580-32280630 chr2:32347210-32353200 chr2:32747480-32748520 chr2:32749010-32750660 chr2:32835910-32836880 chr2:32308460-32310270 chr2:32700960-32702570 chr2:32113290-32113600 chr2:32279580-32280080 chr2:32392100-32392830 chr2:32549410-32549500 chr2:32749100-32750800 chr2:32772540-32773440 chr2:32815860-32816220 chr2:32474580-32474850 chr2:32477390-32478320 chr2:32479710-32480950 chr2:32731920-32741110 chr2:32391750-32395790 chr2:32477390-32478330 chr2:32479540-32480950 chr2:32549260-32549500 chr2:32566590-32567550 chr2:32731920-32741360 chr2:32701530-32702570 chr2:32474620-32474850 chr2:32477390-32478360 chr2:32479840-32480950 chr2:32566600-32567550 chr2:32731920-32741290 chr2:32172720-32173780 chr2:32174080-32174810 chr2:32229610-32229860 chr2:32229980-32230180 chr2:32274720-32275710 chr2:32283410-32286040 chr2:32286670-32287210 chr2:32302490-32304560 chr2:32348590-32353040 chr2:32360940-32367410 chr2:32369120-32370910 chr2:32402350-32407340 chr2:32544750-32545430 chr2:32613080-32613810 chr2:32645150-32647210 chr2:32713050-32713630 chr2:32735770-32741320 chr2:32767650-32767930 chr2:32768100-32768420 chr2:32769460-32771090 chr2:32772710-32773770 chr2:32291360-32294140 chr2:32364750-32365100 chr2:32391870-32395130 chr2:32477390-32477660 chr2:32480000-32480950 chr2:32566930-32567550 chr2:32605830-32606470 chr2:32548830-32549500 chr2:32731920-32732680 chr2:32279580-32281140 chr2:32305090-32305970 chr2:32361100-32375000 chr2:32731920-32741400 chr2:32743450-32761280 chr2:32271840-32271920 chr2:32272070-32272610 chr2:32273670-32274560 chr2:32294200-32294770 chr2:32364610-32366200 chr2:32379270-32380870 chr2:32426810-32427220 chr2:32477390-32477740 chr2:32479650-32480950 chr2:32559690-32561040 chr2:32689360-32691100 chr2:32731920-32734780 chr2:32734940-32739050 chr2:32750960-32755230 chr2:32769690-32770930 chr2:32701170-32702570 chr2:32142200-32143110 chr2:32219850-32220200 chr2:32286670-32289800 chr2:32291400-32297270 chr2:32346600-32350870 chr2:32354400-32360200 chr2:32371200-32380870 chr2:32400130-32408000 chr2:32426810-32427600 chr2:32566400-32567550 chr2:32606270-32606470 chr2:32606580-32607030 chr2:32607200-32608010 chr2:32614450-32615040 chr2:32623800-32624360 chr2:32627530-32627620 chr2:32627730-32629180 chr2:32664720-32666400 chr2:32689200-32692000 chr2:32731920-32738610 chr2:32744000-32758410 chr2:32816110-32816560 chr2:32028600-32033200 chr2:32308460-32309600 chr2:32701000-32702570 chr2:32409400-32413540 chr2:32413660-32413830 chr2:32413860-32415550 chr2:32415670-32416730 chr2:32477390-32478800 chr2:32481050-32483000 chr2:32679100-32681800 chr2:32731920-32738600 chr2:32749600-32756400 chr2:32166000-32167640 chr2:32167860-32168200 chr2:32176140-32176960 chr2:32183620-32186350 chr2:32263900-32265280 chr2:32279580-32280650 chr2:32286670-32287400 chr2:32364700-32366180 chr2:32391750-32394560 chr2:32479520-32480950 chr2:32566720-32567550 chr2:32605860-32606470 chr2:32672350-32672800 chr2:32672900-32673700 chr2:32731920-32734830 chr2:32739150-32741170 chr2:32769210-32771620 chr2:32772720-32774510 chr2:33019740-33022860 chr2:33033680-33036680 chr2:33157350-33161980 chr2:32029320-32031610 chr2:32784250-32784370 chr2:32024940-32026040 chr2:32183560-32186750 chr2:32263920-32265230 chr2:32279580-32280680 chr2:32283230-32286040 chr2:32286670-32287260 chr2:32364660-32366000 chr2:32391750-32394650 chr2:32404540-32406190 chr2:32480180-32480950 chr2:32481050-32482450 chr2:32535280-32535800 chr2:32535850-32536250 chr2:32549100-32549500 chr2:32567010-32567550 chr2:32735590-32738160 chr2:32769610-32770950 chr2:32029310-32031370 chr2:32702250-32702570 chr2:32219850-32220660 chr2:32566500-32567550 chr2:32276220-32276820 chr2:32279580-32280830 chr2:32302490-32303580 chr2:32350350-32351410 chr2:32364640-32366440 chr2:32391750-32393530 chr2:32393580-32396610 chr2:32431410-32431560 chr2:32474560-32474850 chr2:32477390-32478160 chr2:32479810-32480950 chr2:32481050-32482270 chr2:32566820-32567550 chr2:32689230-32691530 chr2:32731920-32739080 chr2:32740280-32740920 chr2:32769520-32771000 chr2:32782620-32783500 chr2:32292320-32293620 chr2:32701600-32702570 chr2:32784250-32784470 chr2:32348800-32349490 chr2:32349560-32351470 chr2:32354980-32355390 chr2:32361810-32364110 chr2:32364390-32366540 chr2:32367630-32371220 chr2:32483510-32483900 chr2:32613080-32613370 chr2:32689070-32692030 chr2:32695970-32696830 chr2:32731920-32740590 chr2:32745420-32748560 chr2:32751320-32755100 chr2:32768100-32768300 chr2:32769160-32771680 chr2:32772760-32773810 chr2:32783650-32784170 chr2:32700720-32702570 chr2:32784250-32784580 chr2:32302600-32303500 chr2:32348600-32349420 chr2:32349930-32351430 chr2:32362050-32363490 chr2:32480580-32480950 chr2:32482920-32483900 chr2:32731920-32739010 chr2:32745970-32748820 chr2:32749130-32755040 chr2:32768970-32770990 chr2:32772580-32773910 chr2:32818580-32818730 chr2:32309110-32310310 chr2:32701060-32702570 chr2:32291550-32297270 chr2:32391750-32395650 chr2:32400130-32410380 chr2:32478400-32480950 chr2:32606020-32606470 chr2:32607200-32608060 chr2:32645920-32648470 chr2:32731920-32747430 chr2:32747460-32761280 chr2:32815460-32816560 chr2:32698520-32702570 chr2:32784250-32784850 chr2:32737870-32738950 chr2:32772750-32774100 chr2:32142280-32143110 chr2:32279580-32280980 chr2:32305420-32305970 chr2:32349010-32352650 chr2:32391750-32393510 chr2:32415670-32416340 chr2:32426810-32427200 chr2:32731920-32733710 chr2:32737160-32738500 chr2:32747820-32748590 chr2:32748710-32750830 chr2:32806250-32806500 chr2:32700540-32702570 chr2:32278640-32279310 chr2:32279580-32281170 chr2:32286670-32287730 chr2:32304910-32305970 chr2:32391750-32394900 chr2:32431410-32432030 chr2:32480220-32480950 chr2:32598240-32600270 chr2:32639390-32639740 chr2:32645150-32650100 chr2:32650230-32651530 chr2:32731920-32739230 chr2:32816030-32816560 chr2:32835980-32836880 chr2:32698510-32702570 chr2:32302490-32304580 chr2:32304800-32305970 chr2:32347210-32353120 chr2:32354120-32357690 chr2:32406780-32412140 chr2:32735080-32738180 chr2:32743820-32748380 chr2:32772170-32774510 chr2:32219850-32219970 chr2:32347360-32353440 chr2:32548430-32549500 chr2:31894990-31895700 chr2:32036850-32037970 chr2:32166930-32167640 chr2:32167860-32168180 chr2:32277490-32279310 chr2:32279580-32281540 chr2:32282960-32286040 chr2:32286670-32287840 chr2:32291380-32297270 chr2:32302490-32304740 chr2:32404550-32406040 chr2:32415670-32416620 chr2:32477390-32477970 chr2:32479970-32480950 chr2:32631410-32631600 chr2:32731920-32732770 chr2:32769440-32771290 chr2:32819370-32819490 chr2:32029120-32031470 chr2:32701590-32702570 chr2:32480660-32480950 chr2:32731920-32732140 chr2:32548720-32549500 chr2:32624270-32624360 chr2:32402390-32413490 chr2:32605200-32606470 chr2:32743400-32754060 chr2:32362210-32363670 chr2:32391750-32393220 chr2:32548820-32549500 chr2:32731920-32742120 chr2:32742390-32757510 chr2:32815770-32816560 chr2:32701260-32702570 chr2:32751280-32754020 chr2:32409150-32409600 chr2:32481100-32483900 chr2:32536530-32536710 chr2:32566080-32566400 chr2:32748970-32754020 chr2:32772390-32774510 chr2:32348120-32351340 chr2:32679100-32680430 chr2:32279580-32281560 chr2:32282350-32286040 chr2:32286670-32287380 chr2:32290180-32297270 chr2:32302490-32304640 chr2:32304760-32305970 chr2:32347210-32351390 chr2:32400130-32408670 chr2:32413660-32413750 chr2:32479600-32480950 chr2:32614450-32614900 chr2:32632320-32632480 chr2:32688080-32692480 chr2:32731920-32738170 chr2:32738190-32742140 chr2:32742440-32761280 chr2:32815680-32816560 chr2:32548920-32549500 chr2:32731920-32734390 chr2:32737740-32738530 chr2:32701510-32702570 chr2:32304730-32305970 chr2:32391750-32395520 chr2:32565850-32565990 chr2:32627160-32627400 chr2:32633800-32633920 chr2:32731920-32732840 chr2:32818580-32818800 chr2:32347570-32352660 chr2:32396550-32398420 chr2:32408840-32410240 chr2:32613080-32613360 chr2:32294700-32296070 chr2:32348350-32349420 chr2:32362060-32364080 chr2:32364780-32366180 chr2:32379140-32380530 chr2:32391750-32395630 chr2:32396590-32397710 chr2:32404480-32404830 chr2:32480560-32480950 chr2:32481050-32482280 chr2:32483240-32483900 chr2:32535420-32535800 chr2:32548630-32549500 chr2:32690210-32691380 chr2:32748900-32755780 chr2:32769470-32770930 chr2:32291580-32293580 chr2:32701430-32702570 chr2:32480770-32480950 chr2:32549280-32549500 chr2:32567740-32568080 chr2:32817350-32817450 chr2:32702430-32702570 chr2:32391750-32393090 chr2:32432370-32432900 chr2:32477390-32478170 chr2:32548400-32549500 chr2:32567430-32567550 chr2:32534930-32535450 chr2:32751510-32755060 chr2:32279580-32280380 chr2:32302490-32303600 chr2:32347350-32353120 chr2:32354330-32359660 chr2:32366490-32369060 chr2:32369290-32370940 chr2:32402220-32413540 chr2:32548770-32549500 chr2:32736550-32739270 chr2:32771990-32773930 chr2:32702310-32702570 chr2:32395980-32398420 chr2:32408900-32410300 chr2:32638290-32639160 chr2:32302840-32303480 chr2:32348230-32351370 chr2:32391750-32392130 chr2:32396330-32398420 chr2:32577360-32577930 chr2:32690040-32690270 chr2:32731920-32732110 chr2:32773070-32773490 chr2:32702320-32702570 chr2:32405170-32405830 chr2:32535450-32535800 chr2:32536360-32536710 chr2:32548790-32549500 chr2:32731920-32732670 chr2:32736480-32738600 chr2:32770190-32771080 chr2:32785220-32785280 chr2:32702460-32702570 chr2:32173000-32173780 chr2:32174080-32174210 chr2:32252070-32252700 chr2:32274470-32274560 chr2:32274720-32275650 chr2:32279580-32280960 chr2:32305410-32305970 chr2:32391750-32393340 chr2:32426810-32427080 chr2:32477390-32477630 chr2:32548700-32549500 chr2:32631410-32631710 chr2:32731920-32732540 chr2:32769910-32771540 chr2:32292070-32293420 chr2:32112180-32112680 chr2:32279580-32279770 chr2:32365410-32365910 chr2:32369820-32370400 chr2:32391900-32393420 chr2:32483440-32483900 chr2:32567300-32567550 chr2:32731920-32732190 chr2:32787360-32787610 chr2:32702330-32702570

Promoter:

chr2:32710784-32714784

 ChIP-seq based regulatory details of Cdk9
Sample ID Experiment target Biosample term name Cell type Tissue type Source
TcoF_01_21005 Cdk9 EL-4 None None Cistrome
TcoF_01_21004 Cdk9 None Th1 None Cistrome
TcoF_01_21003 Cdk9 None Th2 None Cistrome
TcoF_01_21002 Cdk9 EL-4 None None Cistrome
TcoF_01_21001 Cdk9 None Macrophage Bone Marrow Cistrome
TcoF_01_21000 Cdk9 None Macrophage Bone Marrow Cistrome
TcoF_01_20999 Cdk9 NIH-3T3 Fibroblast Embryo Cistrome
TcoF_01_20998 Cdk9 NIH-3T3 Fibroblast Embryo Cistrome
TcoF_01_20997 Cdk9 NIH-3T3 Fibroblast Embryo Cistrome
TcoF_01_20996 Cdk9 NIH-3T3 Fibroblast Embryo Cistrome
TcoF_01_20995 Cdk9 None Embryonic Stem Cell Embryo Cistrome
TcoF_01_20994 Cdk9 KH2 Embryonic Stem Cell Embryo Cistrome
TcoF_01_20993 Cdk9 C88 MEL Erythroid Progenitor Cell Blood Cistrome
TcoF_01_20992 Cdk9 None Embryonic Fibroblast Embryo Cistrome
TcoF_01_20991 Cdk9 None Macrophage Bone Marrow Cistrome
TcoF_01_20990 Cdk9 None Macrophage Bone Marrow Cistrome
TcoF_01_20989 Cdk9 None Macrophage Bone Marrow Cistrome
TcoF_01_20988 Cdk9 None Macrophage Bone Marrow Cistrome
 Downstream target genes of Cdk9
 Upstream regulatory details of Cdk9
 Protein-protein interaction of Cdk9
OFFICIAL_SYMBOL_A OFFICIAL_SYMBOL_B EXPERIMENTAL_SYSTEM PUBMED_ID ORGANISM_A_ID ORGANISM_B_ID SOURCE
Cdk9 CCNT1 Affinity Capture-Western 20081228 10090 9606 BIOGRID
Cdk9 GATA4 Affinity Capture-Western 20081228 10090 9606 BIOGRID
Cdk9 ACTB Affinity Capture-Western 20081228 10090 9606 BIOGRID
Cdk9 EP300 Affinity Capture-Western 20081228 10090 9606 BIOGRID
Cdk9 GATA4 Reconstituted Complex 20081228 10090 9606 BIOGRID
Cdk9 EP300 Reconstituted Complex 20081228 10090 9606 BIOGRID
Cdk9 Traf2 Two-hybrid 9827693 10090 10090 BIOGRID
Cdk9 Rb1 Biochemical Activity 9827693 10090 10090 BIOGRID
 Annotation of Cdk9
 Disease information of Cdk9