TcoF overview
| TcoF: | Cry1 | |
| GeneID: | 12952 | |
| Name: | Cryptochrome-1 | |
| Ensembl: | ENSMUSG00000020038 | |
| Species: | Mouse | |
| Class: | class HC | |
| Family: | Others | |
| Disease: | -- | |
| Go-trem: | 37 | |
| Pathway: | 4 | |
| Super Enhancer: | chr10:85265508-85267091 chr10:85194193-85194863 chr10:85194149-85194814 chr10:85165098-85168206 chr10:85159088-85166670 chr10:85220982-85222009 chr10:85294659-85296320 chr10:85220892-85222438 chr10:85197359-85211108 chr10:85160819-85161867 chr10:85221229-85222058 chr10:85159910-85161260 chr10:85174968-85175545 chr10:85189466-85190825 chr10:85161380-85162309 chr10:85160207-85163886 chr10:85221203-85222202 chr10:85256069-85256932 chr10:85204307-85204893 chr10:85230730-85231520 chr10:85174109-85175515 chr10:85192324-85193757 chr10:85218023-85218953 chr10:85164920-85166721 chr10:85291674-85293974 chr10:85294445-85296159 chr10:85194253-85195329 chr10:85197382-85215788 chr10:85331131-85331793 chr10:85161558-85162216 chr10:85266082-85266663 chr10:85161423-85162387 chr10:85201163-85201782 chr10:85161566-85162229 |
|
| Enhancer: |
chr10:84563980-84565040 chr10:84565740-84573540 chr10:84623610-84626100 chr10:84589230-84590700 chr10:84565740-84566730 chr10:84564640-84565040 chr10:84564920-84565040 chr10:84564170-84565040 chr10:84565740-84566960 chr10:84872890-84874500 chr10:84589970-84590700 chr10:84564220-84565040 chr10:84623610-84626780 chr10:84589840-84590700 chr10:84646280-84647050 chr10:84564140-84565040 chr10:84565740-84566820 chr10:84872830-84875190 chr10:84358840-84362590 chr10:84590410-84590700 chr10:84564070-84565040 chr10:84565740-84567100 chr10:84623610-84629720 chr10:84589290-84590700 chr10:84314030-84318800 chr10:84365660-84367650 chr10:84563960-84565040 chr10:84565740-84566840 chr10:84623610-84626740 chr10:84926090-84932910 chr10:84589650-84590700 chr10:84282290-84283460 chr10:84397700-84398950 chr10:84563450-84565040 chr10:84565740-84567210 chr10:84873740-84874780 chr10:84964280-84965960 chr10:84979620-84981020 chr10:84988860-84989830 chr10:84589780-84590700 chr10:84564970-84565040 chr10:84590460-84590700 chr10:84396970-84400280 chr10:84464640-84468820 chr10:84512380-84517200 chr10:84564310-84565040 chr10:84943970-84945740 chr10:84564440-84565040 chr10:84565740-84565880 chr10:84512890-84515040 chr10:84515140-84515610 chr10:84672620-84673450 chr10:84301020-84302760 chr10:84321340-84323000 chr10:84512020-84518600 chr10:84564130-84565040 chr10:84565740-84568040 chr10:84590540-84590700 chr10:84512930-84516070 chr10:84564460-84565040 chr10:84565740-84566930 chr10:84590070-84590700 chr10:84589820-84590700 chr10:84321340-84323240 chr10:84506880-84508070 chr10:84564190-84565040 chr10:84284720-84285960 chr10:84564510-84565040 chr10:84565740-84566260 chr10:84979560-84981460 chr10:84590280-84590700 chr10:84564450-84565040 chr10:84565740-84566860 chr10:84728940-84729420 chr10:84564240-84565040 chr10:84363730-84367570 chr10:84464640-84465490 chr10:84488570-84489560 chr10:84490300-84491160 chr10:84563840-84565040 chr10:84565740-84566790 chr10:84624310-84624950 chr10:84589760-84590700 chr10:84285620-84286920 chr10:84321340-84322180 chr10:84485780-84486390 chr10:84507530-84507880 chr10:84564690-84565040 chr10:84565740-84566360 chr10:84944450-84945220 chr10:85002210-85003010 chr10:84646800-84647050 chr10:84563070-84565040 chr10:84565740-84567560 chr10:84564520-84565040 chr10:84801110-84801980 chr10:84564530-84565040 chr10:84565740-84567200 chr10:84623610-84626280 chr10:84623610-84629000 chr10:84219250-84221280 chr10:84321340-84322970 chr10:84484780-84486740 chr10:84506930-84507970 chr10:84565740-84566800 chr10:84646960-84647050 chr10:84944540-84945740 chr10:84960070-84961310 chr10:84972490-84973970 chr10:84979360-84982180 chr10:84564680-84565040 chr10:84564320-84565040 chr10:84314780-84315990 chr10:84564260-84565040 chr10:84565740-84566870 chr10:84315220-84315940 chr10:84564410-84565040 chr10:84565740-84566830 chr10:84624580-84625050 chr10:84623610-84626210 chr10:84964480-84967460 chr10:84589540-84590700 chr10:84282120-84283130 chr10:84564350-84565040 chr10:84565740-84566770 chr10:84814770-84818020 chr10:84872260-84875510 chr10:84964500-84966550 chr10:84358840-84361280 chr10:84484250-84487260 chr10:84506440-84508040 chr10:84851220-84851510 chr10:84942600-84945790 chr10:84590440-84590700 chr10:84321940-84323240 chr10:84348610-84350200 chr10:84914410-84915060 chr10:84464640-84468800 chr10:84964300-84966750 chr10:84565740-84566780 chr10:84398280-84398850 chr10:84359800-84361320 chr10:84277800-84279840 chr10:84646880-84647050 chr10:84941960-84945660 chr10:84589750-84590700 chr10:84564600-84565040 chr10:84590490-84590700 chr10:84562230-84564860 chr10:84398210-84398830 chr10:84943660-84944160 chr10:84564780-84565040 chr10:84565740-84566160 chr10:84590230-84590700 chr10:84680880-84681460 chr10:84278100-84279710 chr10:84357100-84358700 chr10:84488560-84488990 chr10:84564430-84565040 chr10:84565740-84567930 chr10:84872020-84875570 chr10:84590530-84590700 chr10:84872990-84874830 chr10:84564550-84565040 chr10:84628940-84629430 chr10:84816580-84816990 chr10:84821310-84822580 chr10:84565740-84566520 chr10:84590480-84590700 chr10:84514220-84516610 chr10:84972040-84977210 chr10:84987680-84989880 chr10:84999030-85003160 chr10:84564610-84565040 chr10:84565740-84565810 chr10:84590240-84590700 chr10:84321850-84322420 chr10:84348790-84349390 chr10:84914370-84915010 chr10:84988140-84988680 chr10:85001760-85003130 chr10:85087490-85087640 |
|
| Promoter: |
chr10:85183054-85187054 |
ChIP-seq based regulatory details of Cry1
| Sample ID | Experiment target | Biosample term name | Cell type | Tissue type | Source |
|---|---|---|---|---|---|
| TcoF_01_20206 | Cry1 | None | None | Liver | Cistrome |
| TcoF_01_20143 | Cry1 | None | Epithelium | Liver | Cistrome |
| TcoF_01_20139 | Cry1 | None | Epithelium | Liver | Cistrome |
| TcoF_01_20136 | Cry1 | None | Epithelium | Liver | Cistrome |
| TcoF_01_20134 | Cry1 | None | Epithelium | Liver | Cistrome |
| TcoF_01_20127 | Cry1 | None | Epithelium | Liver | Cistrome |
| TcoF_01_20124 | Cry1 | None | Epithelium | Liver | Cistrome |
| TcoF_01_20123 | Cry1 | None | Epithelium | Liver | Cistrome |
Downstream target genes of Cry1
Protein-protein interaction of Cry1
| OFFICIAL_SYMBOL_A | OFFICIAL_SYMBOL_B | EXPERIMENTAL_SYSTEM | PUBMED_ID | ORGANISM_A_ID | ORGANISM_B_ID | SOURCE |
|---|---|---|---|---|---|---|
| Cry1 | Clock | Affinity Capture-Western | 14701732 | 10090 | 10090 | BIOGRID |
| Cry1 | Per1 | Affinity Capture-Western | 14701732 | 10090 | 10090 | BIOGRID |
| Cry1 | Per2 | Affinity Capture-Western | 14701732 | 10090 | 10090 | BIOGRID |
| Cry1 | Per3 | Affinity Capture-Western | 14701732 | 10090 | 10090 | BIOGRID |
| Cry1 | Cry2 | Affinity Capture-Western | 14701732 | 10090 | 10090 | BIOGRID |
| Cry1 | CSNK1E | Affinity Capture-Western | 11875063 | 10090 | 9606 | BIOGRID |
| Cry1 | Timeless | Two-hybrid | 20211142 | 10090 | 10090 | BIOGRID |
| Cry1 | Arntl | Reconstituted Complex | 15226430 | 10090 | 10090 | BIOGRID |
| Cry1 | Sin3b | Reconstituted Complex | 15226430 | 10090 | 10090 | BIOGRID |
| Cry1 | Hdac1 | Reconstituted Complex | 15226430 | 10090 | 10090 | BIOGRID |
| Cry1 | Hdac2 | Reconstituted Complex | 15226430 | 10090 | 10090 | BIOGRID |
| Cry1 | Hdac1 | Affinity Capture-Western | 15226430 | 10090 | 10090 | BIOGRID |
| Cry1 | Hdac2 | Affinity Capture-Western | 15226430 | 10090 | 10090 | BIOGRID |
| Cry1 | Sin3b | Affinity Capture-Western | 15226430 | 10090 | 10090 | BIOGRID |
| Cry1 | CRY1 | Affinity Capture-MS | 20360068 | 10090 | 9606 | BIOGRID |
| Cry1 | PER1 | Affinity Capture-MS | 20360068 | 10090 | 9606 | BIOGRID |
| Cry1 | FBXL3 | Affinity Capture-MS | 20360068 | 10090 | 9606 | BIOGRID |
| Cry1 | Arntl | Affinity Capture-Western | 21966515 | 10090 | 10090 | BIOGRID |
| Cry1 | Usp2 | Affinity Capture-Western | 21966515 | 10090 | 10090 | BIOGRID |
| Cry1 | Timeless | Affinity Capture-Western | 12875843 | 10090 | 10090 | BIOGRID |
| Cry1 | Clock | Affinity Capture-Western | 25127877 | 10090 | 10090 | BIOGRID |
| Cry1 | Arntl | Affinity Capture-Western | 25127877 | 10090 | 10090 | BIOGRID |
| Cry1 | Per1 | Affinity Capture-Western | 25127877 | 10090 | 10090 | BIOGRID |
| Cry1 | Per2 | Affinity Capture-Western | 25127877 | 10090 | 10090 | BIOGRID |
| Cry1 | Usp2 | Affinity Capture-Western | 23213472 | 10090 | 10090 | BIOGRID |
| Cry1 | ANK3 | Affinity Capture-MS | 26496610 | 10090 | 9606 | BIOGRID |
| Cry1 | ARNTL | Affinity Capture-MS | 26496610 | 10090 | 9606 | BIOGRID |
| Cry1 | CSNK1D | Affinity Capture-MS | 26496610 | 10090 | 9606 | BIOGRID |
| Cry1 | CSNK1E | Affinity Capture-MS | 26496610 | 10090 | 9606 | BIOGRID |
| Cry1 | NFIB | Affinity Capture-MS | 26496610 | 10090 | 9606 | BIOGRID |
| Cry1 | NVL | Affinity Capture-MS | 26496610 | 10090 | 9606 | BIOGRID |
| Cry1 | PER1 | Affinity Capture-MS | 26496610 | 10090 | 9606 | BIOGRID |
| Cry1 | TAGLN2 | Affinity Capture-MS | 26496610 | 10090 | 9606 | BIOGRID |
| Cry1 | CLOCK | Affinity Capture-MS | 26496610 | 10090 | 9606 | BIOGRID |
| Cry1 | NCAPG2 | Affinity Capture-MS | 26496610 | 10090 | 9606 | BIOGRID |
| Cry1 | ELMO3 | Affinity Capture-MS | 26496610 | 10090 | 9606 | BIOGRID |
| Cry1 | FAM134C | Affinity Capture-MS | 26496610 | 10090 | 9606 | BIOGRID |
| Cry1 | Cblb | Co-fractionation | 32325033 | 10090 | 10090 | BIOGRID |
| Cry1 | Fam110b | Co-fractionation | 32325033 | 10090 | 10090 | BIOGRID |
| Cry1 | Fam199x | Co-fractionation | 32325033 | 10090 | 10090 | BIOGRID |
| Cry1 | Fam83h | Co-fractionation | 32325033 | 10090 | 10090 | BIOGRID |
| Cry1 | Farp2 | Co-fractionation | 32325033 | 10090 | 10090 | BIOGRID |
| Cry1 | Zswim8 | Co-fractionation | 32325033 | 10090 | 10090 | BIOGRID |
Annotation of Cry1
Expression of Cry1
Disease information of Cry1