TcoF overview
TcoF: Kdm5a
GeneID: 214899
Name: Lysine-specific demethylase 5A
Ensembl: ENSMUSG00000030180
Species: Mouse
Class: NA
Family: Lysine demethylase
Disease: --
Go-trem: 26
Pathway: 2
Super Enhancer:

chr6:120395387-120395984 chr6:120376197-120377652 chr6:120375889-120377757 chr6:120375803-120377720 chr6:120392735-120393246

Enhancer:

chr6:120058350-120067690 chr6:120071780-120074100 chr6:120084300-120087580 chr6:120094220-120101220 chr6:120311980-120314100 chr6:120314790-120316580 chr6:120319070-120319600 chr6:120344790-120346780 chr6:120402500-120403210 chr6:120413480-120418050 chr6:120423090-120423770 chr6:120423880-120424220 chr6:120433740-120438950 chr6:120478520-120481180 chr6:120533900-120543480 chr6:120591450-120593020 chr6:120422130-120422940 chr6:120084890-120085210 chr6:120314000-120314100 chr6:120413480-120413870 chr6:120416630-120417000 chr6:120423550-120423770 chr6:120429420-120429740 chr6:120312460-120314100 chr6:120314790-120315670 chr6:120413480-120414930 chr6:120480420-120481180 chr6:120123360-120125460 chr6:120313050-120314100 chr6:120314790-120315340 chr6:120413480-120414480 chr6:120416220-120417520 chr6:120423490-120423770 chr6:120423880-120424300 chr6:120424430-120424610 chr6:120516760-120518480 chr6:120555670-120556170 chr6:120142250-120142540 chr6:120423090-120423230 chr6:120313630-120314100 chr6:120141920-120142630 chr6:120313180-120314100 chr6:120314790-120315050 chr6:120413480-120414670 chr6:120416700-120417050 chr6:120480860-120481180 chr6:119985470-119986890 chr6:120005340-120007690 chr6:120413480-120419040 chr6:120435700-120438950 chr6:120478170-120481180 chr6:120516430-120518330 chr6:119867830-119868600 chr6:120135450-120136490 chr6:120312940-120314100 chr6:120413480-120416200 chr6:120416220-120418930 chr6:120423880-120424040 chr6:120434690-120437840 chr6:120480600-120481180 chr6:120516270-120518580 chr6:120710070-120711150 chr6:120786370-120787390 chr6:120878470-120881560 chr6:119985550-119986890 chr6:120005870-120006500 chr6:120065470-120075960 chr6:120136970-120142190 chr6:120312120-120314100 chr6:120413480-120415720 chr6:120415830-120418040 chr6:120435260-120438950 chr6:120478020-120481180 chr6:120142980-120145240 chr6:120005700-120006550 chr6:120026740-120028020 chr6:120071870-120075510 chr6:120149230-120150030 chr6:120312420-120314100 chr6:120314790-120315130 chr6:120402530-120403210 chr6:120413480-120415960 chr6:120416120-120418650 chr6:120478200-120480660 chr6:120480750-120481180 chr6:120516650-120518580 chr6:120312350-120314100 chr6:120314790-120315650 chr6:120242950-120244400 chr6:120314790-120315560 chr6:120413480-120415130 chr6:120424430-120425080 chr6:120435690-120437650 chr6:120479250-120481180 chr6:120539400-120543880 chr6:120200910-120201520 chr6:120312720-120314100 chr6:120480540-120481180 chr6:120516140-120518580 chr6:120534720-120536100 chr6:120312620-120314100 chr6:120402220-120403210 chr6:120415410-120418620 chr6:120428620-120430020 chr6:120435790-120436630 chr6:119985590-119986890 chr6:120026100-120028070 chr6:120030150-120033390 chr6:120043470-120056120 chr6:120057740-120063050 chr6:120400940-120403210 chr6:120413480-120422100 chr6:120424430-120425240 chr6:120425290-120425470 chr6:120428500-120430020 chr6:120433740-120437930 chr6:120516180-120518520 chr6:120098620-120111260 chr6:120014330-120016280 chr6:120057910-120059930 chr6:120133690-120140200 chr6:120148840-120150030 chr6:120240900-120244400 chr6:120312730-120314100 chr6:120460830-120462120 chr6:120480270-120481180 chr6:120541790-120543230 chr6:120123180-120126310 chr6:120312830-120314100 chr6:120314790-120315690 chr6:120434500-120437180 chr6:120465850-120467060 chr6:120467090-120467710 chr6:120013760-120016490 chr6:120148960-120150030 chr6:120236690-120244400 chr6:120413480-120414500 chr6:120460830-120462490 chr6:120480940-120481180 chr6:120223140-120227000 chr6:120134600-120140120 chr6:120243360-120244400 chr6:120312820-120314100 chr6:120314790-120315300 chr6:120480440-120481180 chr6:120312880-120314100 chr6:120314790-120315160 chr6:120413480-120415730 chr6:120313120-120314100 chr6:120314790-120314970 chr6:120480730-120481180 chr6:120540630-120543540 chr6:120413480-120415950 chr6:120313230-120314100 chr6:120314790-120315220 chr6:120123360-120125490 chr6:120165520-120166290 chr6:120166350-120166570 chr6:120166670-120167470 chr6:120167580-120167960 chr6:120312380-120314100 chr6:120413480-120415230 chr6:120467090-120468460 chr6:120478230-120481180 chr6:120504970-120508580 chr6:120564840-120571620 chr6:120744360-120745260 chr6:120745780-120747890 chr6:120767440-120768350 chr6:120802710-120812870 chr6:120822860-120825430 chr6:120903830-120907710 chr6:120907810-120908250 chr6:120912880-120916220 chr6:121000020-121006000 chr6:121025470-121031420 chr6:120747980-120750920 chr6:119985570-119986890 chr6:120123660-120125510 chr6:120413480-120415970 chr6:120416050-120417500 chr6:120480570-120481180 chr6:120504970-120507260 chr6:120745780-120746760 chr6:120767310-120768350 chr6:120313610-120314100 chr6:120416520-120418380 chr6:120423880-120424180 chr6:120516810-120518390 chr6:119986550-119986890 chr6:120095270-120097830 chr6:120122310-120126740 chr6:120166170-120166290 chr6:120167580-120167850 chr6:120312860-120314100 chr6:120314790-120316370 chr6:120223880-120226480 chr6:120312910-120314100 chr6:120314790-120315640 chr6:120001850-120003600 chr6:120057550-120063060 chr6:120094460-120103010 chr6:120123090-120127010 chr6:120133640-120134270 chr6:120137330-120144980 chr6:120312930-120314100 chr6:120314790-120315370 chr6:120413480-120415060 chr6:120480670-120481180 chr6:120516470-120518140 chr6:120535160-120536450 chr6:120537630-120539980 chr6:120540060-120541390 chr6:120579020-120579340 chr6:120592770-120595630 chr6:120108300-120111860 chr6:120224060-120226100 chr6:120141660-120142830 chr6:120190180-120190850 chr6:120313030-120314100 chr6:120314790-120314890 chr6:120423880-120424280 chr6:120312980-120314100 chr6:119985840-119986890 chr6:120012450-120018890 chr6:120026200-120033390 chr6:120236520-120244400 chr6:120256010-120272060 chr6:120312070-120314100 chr6:120058240-120060210 chr6:120095330-120096250 chr6:120123400-120125380 chr6:120199780-120202390 chr6:120204630-120206970 chr6:120212880-120214790 chr6:120243750-120244400 chr6:120314790-120315610 chr6:120326800-120327170 chr6:120416320-120417600 chr6:120425630-120425870 chr6:120480430-120481180 chr6:120541790-120543110 chr6:120564500-120564960 chr6:120191890-120194090 chr6:119984320-119986890 chr6:120123400-120126400 chr6:120181600-120182900 chr6:120183000-120195600 chr6:120197620-120217600 chr6:120241400-120244400 chr6:120325000-120328200 chr6:120413480-120414780 chr6:120478400-120481180 chr6:120313170-120314100 chr6:120535400-120537000 chr6:120540200-120544000 chr6:120314790-120315570 chr6:120413480-120414410 chr6:120541740-120543480 chr6:120312850-120314100 chr6:120314790-120314930 chr6:120413690-120414270 chr6:120123240-120127450 chr6:120127600-120131680 chr6:120164460-120164760 chr6:120167580-120168880 chr6:120169020-120169710 chr6:120413480-120415070 chr6:120463220-120464410 chr6:120464590-120467060 chr6:120468550-120470170 chr6:120477180-120481180 chr6:120504970-120507120 chr6:120537580-120543440 chr6:120564550-120572120 chr6:119986670-119986890 chr6:120123310-120126760 chr6:120314790-120315660 chr6:120413480-120415090 chr6:120006070-120006450 chr6:120059270-120060500 chr6:120094620-120100730 chr6:120121850-120125270 chr6:120139900-120142890 chr6:120413970-120415000 chr6:120143760-120145310 chr6:120095160-120101380 chr6:120101790-120102030 chr6:120123270-120125230 chr6:120136210-120139600 chr6:120141500-120142820 chr6:120314790-120315350 chr6:120413480-120414280 chr6:120144440-120146090 chr6:120084580-120087380 chr6:120094150-120097870 chr6:120314790-120315110 chr6:120413480-120418650 chr6:120479590-120481180 chr6:120223390-120226500 chr6:120191720-120194060 chr6:119660740-119662310 chr6:119852850-119853620 chr6:119862130-119862490 chr6:120032770-120033390 chr6:120053020-120053690 chr6:120124100-120125150 chr6:120262370-120263010 chr6:120299020-120299550 chr6:120402350-120403210 chr6:120480030-120481180 chr6:120504970-120507650 chr6:120538750-120539300 chr6:120550390-120550810 chr6:120734550-120736050 chr6:120739480-120740790 chr6:120745780-120747000 chr6:120786370-120787620 chr6:120791420-120792450 chr6:120804180-120805270 chr6:120823350-120824720 chr6:120842860-120843130 chr6:120852080-120852340 chr6:120904540-120907710 chr6:120936930-120938170 chr6:120941020-120943030 chr6:121005230-121006120 chr6:121025660-121026550 chr6:121026960-121027500 chr6:121046660-121050610 chr6:121050690-121052390 chr6:121052950-121054990 chr6:120110940-120111720 chr6:120748840-120749320 chr6:120879590-120881560 chr6:120122500-120126700 chr6:120128800-120131570 chr6:120314790-120315270 chr6:120415730-120418680 chr6:120516590-120518040 chr6:120312890-120314100 chr6:120314790-120315440 chr6:120479560-120481180 chr6:119985640-119986890 chr6:120084590-120086180 chr6:120095280-120096570 chr6:120312780-120314100 chr6:120314790-120316250 chr6:120413480-120415040 chr6:120480690-120481180 chr6:120591510-120592860 chr6:120005740-120006480 chr6:120015320-120016450 chr6:120084660-120085680 chr6:120136160-120142840 chr6:120402160-120403210 chr6:120434920-120438950 chr6:120477600-120481180 chr6:120314790-120315040 chr6:120242930-120244400 chr6:120312450-120314100 chr6:120423880-120424210 chr6:120480840-120481180 chr6:120313110-120314100 chr6:120460830-120462380 chr6:120135040-120139830 chr6:120399900-120403210 chr6:120416120-120422100 chr6:120425630-120425960 chr6:120515110-120518580 chr6:120101530-120111420 chr6:120094450-120097200 chr6:120123210-120126220 chr6:120402110-120403210 chr6:120413480-120414550 chr6:120415310-120418080 chr6:120480820-120481180 chr6:120517020-120518000 chr6:119986520-119986890 chr6:120084730-120085510 chr6:120123340-120125480 chr6:120138320-120142760 chr6:120314790-120315400 chr6:120312990-120314100 chr6:120314790-120315200 chr6:120031520-120032220 chr6:120129090-120131040 chr6:120135590-120136270 chr6:120402710-120403210 chr6:120417570-120419060 chr6:120423350-120423770 chr6:120424430-120425140 chr6:120435100-120437840 chr6:120516690-120518580 chr6:120189300-120194540 chr6:120198790-120200870 chr6:120298540-120300220 chr6:120312390-120314100 chr6:120434900-120437930 chr6:120479210-120481180 chr6:120084730-120085610 chr6:120141640-120142560 chr6:120243820-120244400 chr6:120313080-120314100 chr6:120314790-120315080 chr6:120413480-120414130 chr6:120480960-120481180 chr6:120224540-120226450 chr6:120413480-120414630 chr6:120478860-120481180 chr6:120005800-120006450 chr6:120101540-120102030 chr6:120129320-120130330 chr6:120416240-120418680 chr6:120478240-120479900 chr6:120480950-120481180 chr6:120123350-120125240 chr6:120141580-120142550 chr6:120204420-120205430 chr6:120312900-120314100 chr6:120413480-120413890 chr6:120144830-120145370 chr6:120313270-120314100 chr6:120413480-120414170 chr6:120480760-120481180 chr6:120144270-120144720 chr6:120084570-120090010 chr6:120213020-120215710 chr6:120424430-120424710 chr6:120476450-120481180 chr6:120026360-120027820 chr6:120071850-120073730 chr6:120074410-120075460 chr6:120402360-120403210 chr6:120434800-120437460 chr6:120478240-120479570 chr6:120516770-120518290 chr6:120243910-120244400 chr6:120417680-120418720 chr6:120434720-120437460 chr6:120478210-120479950 chr6:120516720-120518370 chr6:120142940-120144770 chr6:120033000-120033200 chr6:120314790-120315430 chr6:120413480-120414080 chr6:120416770-120417530 chr6:120480890-120481180 chr6:119986600-119986890 chr6:120059060-120060340 chr6:120142120-120142780 chr6:120413970-120414860 chr6:120481050-120481180 chr6:120193240-120193810 chr6:120013540-120016360 chr6:120135030-120142780 chr6:120148910-120150030 chr6:120242540-120244400 chr6:120313440-120314100 chr6:120223190-120227570 chr6:120240720-120242390 chr6:120142080-120142760 chr6:120314790-120314920 chr6:120413480-120413670 chr6:119986820-119986890 chr6:120058320-120059920 chr6:120130520-120130830 chr6:120142120-120142660 chr6:120149780-120150030 chr6:120243840-120244400 chr6:120224700-120225110 chr6:120241380-120242170

Promoter:

chr6:120362098-120366098

 ChIP-seq based regulatory details of Kdm5a
Sample ID Experiment target Biosample term name Cell type Tissue type Source
TcoF_01_21711 Kdm5a 3T3-L1 Preadipocyte Adipose Cistrome
TcoF_01_21710 Kdm5a 3T3-L1 Preadipocyte Adipose Cistrome
TcoF_01_21709 Kdm5a 3T3-L1 Preadipocyte Adipose Cistrome
TcoF_01_21708 Kdm5a 3T3-L1 Preadipocyte Adipose Cistrome
TcoF_01_21707 Kdm5a 3T3-L1 Preadipocyte Adipose Cistrome
TcoF_01_21706 Kdm5a 3T3-L1 Preadipocyte Adipose Cistrome
TcoF_01_21705 Kdm5a None Embryonic Stem Cell Embryo Cistrome
TcoF_01_21704 Kdm5a None Embryonic Stem Cell Embryo Cistrome
TcoF_01_21703 Kdm5a None Embryonic Stem Cell Embryo Cistrome
TcoF_01_21702 Kdm5a LF2 Embryonic Stem Cell Embryo Cistrome
 Downstream target genes of Kdm5a
 Upstream regulatory details of Kdm5a
 Protein-protein interaction of Kdm5a
OFFICIAL_SYMBOL_A OFFICIAL_SYMBOL_B EXPERIMENTAL_SYSTEM PUBMED_ID ORGANISM_A_ID ORGANISM_B_ID SOURCE
Kdm5a Suz12 Reconstituted Complex 20064375 10090 10090 BIOGRID
Kdm5a GPN3 Affinity Capture-MS 26496610 10090 9606 BIOGRID
Kdm5a C11orf30 Affinity Capture-MS 26496610 10090 9606 BIOGRID
Kdm5a PHF12 Affinity Capture-MS 26496610 10090 9606 BIOGRID
Kdm5a EPB41L5 Affinity Capture-MS 26496610 10090 9606 BIOGRID
Kdm5a GATAD1 Affinity Capture-MS 26496610 10090 9606 BIOGRID
Kdm5a Kdm5b Co-fractionation 32325033 10090 10090 BIOGRID
Kdm5a Kdm5d Co-fractionation 32325033 10090 10090 BIOGRID
 Annotation of Kdm5a
 Disease information of Kdm5a