TcoF overview
TcoF: Rybp
GeneID: 56353
Name: RING1 and YY1-binding protein
Ensembl: ENSMUSG00000072872
Species: Mouse
Class: NA
Family: Others
Disease: --
Go-trem: 15
Pathway: 2
Super Enhancer:

chr6:100335290-100342881 chr6:100380545-100381911 chr6:100162672-100163963 chr6:100360749-100361237 chr6:100162578-100164182 chr6:100380667-100381955 chr6:100190844-100196920 chr6:100210132-100211493 chr6:100143419-100144419 chr6:100356574-100357143 chr6:100271557-100272249 chr6:100341877-100342486 chr6:100100848-100110719 chr6:100195881-100196810 chr6:100083274-100087771 chr6:100143410-100171575 chr6:100212550-100219660 chr6:100194880-100197817 chr6:100335224-100337174 chr6:100299919-100302207 chr6:100045793-100046963 chr6:100376494-100377493 chr6:100119852-100120936 chr6:100193011-100196932 chr6:100254173-100255900 chr6:100158695-100159992 chr6:100375602-100391396 chr6:100332422-100342380 chr6:100180288-100181885 chr6:100271013-100272321 chr6:100202939-100204221 chr6:100375605-100391757 chr6:100332018-100337493 chr6:100271458-100272121 chr6:100206075-100207178 chr6:100143651-100144362 chr6:100192811-100219271 chr6:100143684-100171802 chr6:99990726-99992315 chr6:100106652-100107571 chr6:100143271-100145222 chr6:100195499-100196354 chr6:100087367-100088177 chr6:100195363-100196472 chr6:100011176-100012051 chr6:100195638-100221078 chr6:100143312-100171595 chr6:100335136-100337142 chr6:100119636-100121016 chr6:100074477-100075222 chr6:100014030-100014701 chr6:100301337-100302037 chr6:100095956-100107603 chr6:100061967-100066408 chr6:100194723-100196268 chr6:99990517-99991902 chr6:100301106-100302538 chr6:100242251-100243171 chr6:100356475-100357518 chr6:100335449-100336385 chr6:100143441-100213268 chr6:99991068-99997491 chr6:100335163-100337059 chr6:100126988-100128325 chr6:100297093-100298336 chr6:100254508-100255526 chr6:100379904-100380768 chr6:100011299-100012107 chr6:100040030-100047631 chr6:100165621-100171797 chr6:100109180-100111244 chr6:100187461-100189648 chr6:99991087-99992036 chr6:100144870-100145794 chr6:100206212-100207141 chr6:100143872-100144297 chr6:100195542-100219892 chr6:100126377-100128948 chr6:100362794-100364854 chr6:100162641-100164665 chr6:100177657-100248036 chr6:100326633-100339670 chr6:100106274-100128219 chr6:100143159-100164670 chr6:100304092-100308060 chr6:100263954-100280007 chr6:100044672-100046067 chr6:100355745-100356219 chr6:100143237-100145833 chr6:100321716-100328003 chr6:100177746-100181110 chr6:100356321-100357475 chr6:100195679-100196564 chr6:100159293-100160041 chr6:100269262-100270003 chr6:100194825-100198114 chr6:99990388-99992407 chr6:100143033-100145018 chr6:100221162-100222007 chr6:100297725-100298463 chr6:100389204-100391472 chr6:100254937-100255890 chr6:100120030-100164029 chr6:100011100-100012208 chr6:99995564-99997325 chr6:100218124-100219279 chr6:100195621-100196461 chr6:100335395-100341732 chr6:100011015-100011951 chr6:100058678-100095158 chr6:100139500-100163758 chr6:100356649-100371507 chr6:100341464-100342255 chr6:100331333-100356336 chr6:100376506-100391275 chr6:100180680-100181751 chr6:100203136-100233360 chr6:100270724-100271127 chr6:100027450-100027823 chr6:100305720-100315147 chr6:100011623-100012280 chr6:100127174-100128292 chr6:100109798-100110425 chr6:100196042-100196636 chr6:100011620-100012310 chr6:100170447-100189600 chr6:100258100-100258816 chr6:100062791-100063416 chr6:100141183-100141745 chr6:100301613-100302196 chr6:100170432-100189472 chr6:100094727-100095306 chr6:100141248-100141706 chr6:100258170-100258745 chr6:100276396-100276827 chr6:100128836-100161240 chr6:100189140-100189975 chr6:100062635-100063526 chr6:100109672-100110524 chr6:100165532-100189537 chr6:100040246-100047109 chr6:100109669-100110664 chr6:100141200-100151996 chr6:100258063-100258849 chr6:100276194-100277045 chr6:100011564-100012315 chr6:100365531-100366240 chr6:100221755-100222368 chr6:100305684-100305950 chr6:100011533-100012335

Enhancer:

chr6:99961950-99964930 chr6:100008450-100011700 chr6:100020620-100026040 chr6:100036400-100038360 chr6:100087800-100089440 chr6:100092800-100103880 chr6:100106380-100112220 chr6:100128080-100134780 chr6:100141800-100148780 chr6:100164050-100169920 chr6:100182410-100182860 chr6:100183230-100197480 chr6:100197750-100215400 chr6:100223550-100236470 chr6:100236600-100237230 chr6:100259870-100262430 chr6:100262680-100265040 chr6:100272350-100278220 chr6:100283180-100289440 chr6:100308620-100309750 chr6:100312920-100314850 chr6:100373910-100376200 chr6:100377180-100381250 chr6:100446000-100462280 chr6:100431220-100434980 chr6:100163720-100163960 chr6:100154310-100155540 chr6:99996040-99996510 chr6:100107280-100107650 chr6:100236980-100237230 chr6:100264040-100264620 chr6:100388340-100389640 chr6:100784790-100785930 chr6:100158410-100163700 chr6:100339280-100341630 chr6:100387910-100389620 chr6:100431540-100434660 chr6:100388460-100389030 chr6:99917150-99926400 chr6:100098880-100101350 chr6:100235400-100236470 chr6:100424610-100426950 chr6:100451890-100455870 chr6:99939700-99942620 chr6:99903320-99906550 chr6:99916800-99926410 chr6:99945250-99948440 chr6:100097690-100101460 chr6:100119430-100121880 chr6:100162510-100170350 chr6:100235640-100236470 chr6:100379280-100384130 chr6:100423860-100427240 chr6:100451820-100457830 chr6:99939510-99942650 chr6:100035070-100037690 chr6:100089330-100091080 chr6:100235910-100236470 chr6:100313630-100314220 chr6:100330330-100331750 chr6:100365960-100366550 chr6:100526130-100526620 chr6:100551480-100552520 chr6:100432930-100433830 chr6:100221550-100222370 chr6:100305790-100309020 chr6:100387950-100390280 chr6:100429040-100434300 chr6:100035800-100036730 chr6:100155060-100157870 chr6:100162550-100166980 chr6:100234400-100236470 chr6:100264150-100265840 chr6:100283130-100288180 chr6:100325580-100331610 chr6:100339830-100341360 chr6:100369600-100373320 chr6:100382090-100384080 chr6:100388090-100389980 chr6:100448190-100450510 chr6:100334700-100336280 chr6:100431640-100434450 chr6:100327270-100328390 chr6:100328460-100329880 chr6:100340300-100340780 chr6:100369850-100371380 chr6:100371480-100373150 chr6:100335150-100336220 chr6:99895210-99897870 chr6:100153020-100154120 chr6:100162450-100166900 chr6:100182620-100182860 chr6:100218400-100223100 chr6:100233420-100236470 chr6:100325760-100332130 chr6:100339330-100343260 chr6:100368720-100376940 chr6:100387980-100389750 chr6:100447690-100450910 chr6:100333190-100336740 chr6:100235230-100236470 chr6:100326400-100331970 chr6:100369560-100374350 chr6:100382220-100383150 chr6:100235060-100236470 chr6:100184280-100185600 chr6:100207970-100209010 chr6:100226270-100227960 chr6:100235190-100236470 chr6:100261080-100261590 chr6:99989810-99990910 chr6:99869520-99871220 chr6:99918790-99919340 chr6:99921220-99921880 chr6:99924230-99925820 chr6:100009620-100010350 chr6:100059250-100060830 chr6:100143080-100146880 chr6:100156600-100157330 chr6:100164090-100168230 chr6:100236100-100236470 chr6:100276970-100277640 chr6:100276990-100277550 chr6:99934650-99935660 chr6:100145720-100146420 chr6:100156690-100157430 chr6:100162570-100163250 chr6:100236310-100236470 chr6:100330620-100331110 chr6:100372010-100372360 chr6:100382590-100383720 chr6:100237020-100237230 chr6:100129340-100132940 chr6:100151190-100159980 chr6:100160420-100167910 chr6:100201940-100236470 chr6:100276860-100288390 chr6:100324200-100343820 chr6:100364190-100386330 chr6:100447220-100456840 chr6:100431200-100435070 chr6:100136530-100137280 chr6:100154270-100155100 chr6:100235600-100236470 chr6:100273200-100278400 chr6:100305200-100308000 chr6:100350200-100353200 chr6:100334800-100336600 chr6:99960620-99962080 chr6:100162540-100167050 chr6:100325950-100327450 chr6:100330290-100331560 chr6:100352250-100353220 chr6:100369860-100373110 chr6:100387980-100389640 chr6:100452180-100453920 chr6:100483120-100483290 chr6:100483420-100483680 chr6:99961340-99962070 chr6:99964110-99964860 chr6:100054510-100056550 chr6:100107100-100107880 chr6:100108740-100109850 chr6:100142590-100143640 chr6:100151580-100152340 chr6:100154360-100155000 chr6:100162490-100163960 chr6:100329470-100330170 chr6:100330310-100331540 chr6:100336960-100337800 chr6:100369930-100373180 chr6:100374680-100375370 chr6:100444990-100445930 chr6:100452090-100453940 chr6:99975600-99976060 chr6:100105480-100106190 chr6:100432760-100434040 chr6:99610390-99611340 chr6:100024560-100025580 chr6:100106750-100107600 chr6:100143820-100148190 chr6:100154350-100154890 chr6:100162410-100163600 chr6:100236180-100236470 chr6:100329850-100331140 chr6:99941100-99942250 chr6:100104990-100106550 chr6:100144820-100146880 chr6:100237000-100237230 chr6:100105660-100106250 chr6:100138490-100140150 chr6:99918740-99919180 chr6:99946330-99946990 chr6:100144670-100146880 chr6:100153990-100155090 chr6:100156520-100157850 chr6:100162690-100163960 chr6:100276990-100277300 chr6:100336900-100337360 chr6:100433040-100433720 chr6:100138870-100139870 chr6:99947220-99951180 chr6:99961340-99966100 chr6:100007390-100016590 chr6:100021220-100027780 chr6:100062320-100068710 chr6:100089610-100092440 chr6:100092620-100101940 chr6:100106610-100112410 chr6:100119210-100122530 chr6:100142250-100149190 chr6:100225130-100236470 chr6:100262720-100265110 chr6:100276200-100278070 chr6:100306430-100308220 chr6:100329980-100332680 chr6:100335420-100338700 chr6:100343340-100347960 chr6:100374110-100376050 chr6:100377250-100380880 chr6:100388020-100389430 chr6:100443260-100447080 chr6:100447110-100462560 chr6:100507050-100509650 chr6:100431780-100434940 chr6:100155850-100157930 chr6:100235730-100236470 chr6:100313230-100314400 chr6:100152910-100155030 chr6:100162490-100164050 chr6:100183230-100185060 chr6:100327900-100331950 chr6:100371640-100372470 chr6:100448580-100449310 chr6:99918700-99919500 chr6:99921340-99921870 chr6:100145040-100146470 chr6:100183230-100183660 chr6:100431170-100434700 chr6:100059840-100060980 chr6:100142710-100143320 chr6:100306520-100307440 chr6:100330730-100331830 chr6:100365510-100366510 chr6:100388670-100389470 chr6:100162580-100164970 chr6:100142410-100143360 chr6:100163500-100166160 chr6:100365520-100367090 chr6:100106420-100108360 chr6:99880800-99885420 chr6:99945950-99947600 chr6:100089620-100091160 chr6:100120320-100122150 chr6:100142220-100147820 chr6:100225380-100232050 chr6:100236990-100237230 chr6:100276260-100278110 chr6:99940600-99942650 chr6:100105210-100106660 chr6:99883690-99884840 chr6:99918530-99919400 chr6:100145340-100146900 chr6:100151940-100152490 chr6:100154320-100154930 chr6:100156480-100157480 chr6:100162530-100163470 chr6:100235790-100236470 chr6:100276840-100277320 chr6:100327470-100328740 chr6:100388650-100389080 chr6:99942300-99942610 chr6:100236690-100237230 chr6:100197550-100199170 chr6:100313620-100314880 chr6:100428960-100434310 chr6:100225260-100226060 chr6:100263650-100264710 chr6:100387930-100389930 chr6:99904720-99907130 chr6:99907260-99908300 chr6:100156620-100157860 chr6:100162570-100167370 chr6:100205170-100205870 chr6:100237040-100237230 chr6:100339570-100341310 chr6:100568970-100569890 chr6:100009480-100010650 chr6:100059460-100060590 chr6:100108640-100109690 chr6:100143550-100144240 chr6:100276930-100277500 chr6:99941070-99941460 chr6:100105300-100106330 chr6:100153090-100154150 chr6:100162560-100165940 chr6:100282140-100288100 chr6:100325510-100331830 chr6:100340230-100341620 chr6:100369280-100373450 chr6:100373480-100375230 chr6:100448000-100450570 chr6:100334620-100336300 chr6:100431440-100432950 chr6:100136700-100137180 chr6:100153300-100153890 chr6:100163530-100164030 chr6:100164660-100164910 chr6:100236910-100237230 chr6:100327660-100328800 chr6:100340250-100340610 chr6:100369840-100370540 chr6:100371960-100372420 chr6:100374690-100375160 chr6:100444940-100445740 chr6:100448720-100449330 chr6:100452860-100453390 chr6:100432490-100433000

Promoter:

chr6:100285358-100289358

 ChIP-seq based regulatory details of Rybp
Sample ID Experiment target Biosample term name Cell type Tissue type Source
TcoF_01_21989 Rybp MPI-II Embryonic Stem Cell None Cistrome
TcoF_01_21988 Rybp None Embryonic Stem Cell None Cistrome
TcoF_01_21987 Rybp None Embryonic Stem Cell None Cistrome
TcoF_01_21986 Rybp None Embryonic Stem Cell None Cistrome
TcoF_01_21985 Rybp None Embryonic Stem Cell None Cistrome
TcoF_01_21984 Rybp None Embryonic Stem Cell None Cistrome
TcoF_01_21983 Rybp None Embryonic Stem Cell None Cistrome
TcoF_01_21982 Rybp E14Tg2A Embryonic Stem Cell None Cistrome
TcoF_01_21981 Rybp E14 Embryonic Stem Cell Embryo Cistrome
 Downstream target genes of Rybp
 Upstream regulatory details of Rybp
 Protein-protein interaction of Rybp
OFFICIAL_SYMBOL_A OFFICIAL_SYMBOL_B EXPERIMENTAL_SYSTEM PUBMED_ID ORGANISM_A_ID ORGANISM_B_ID SOURCE
Rybp UBC Reconstituted Complex 17070805 10090 9606 BIOGRID
Rybp Ring1 Affinity Capture-Western 17070805 10090 10090 BIOGRID
Rybp Rnf2 Affinity Capture-Western 17070805 10090 10090 BIOGRID
Rybp Ring1 Affinity Capture-MS 22325148 10090 10090 BIOGRID
Rybp Pcgf6 Affinity Capture-MS 22325148 10090 10090 BIOGRID
Rybp Rnf2 Affinity Capture-MS 22325148 10090 10090 BIOGRID
Rybp Pcgf1 Affinity Capture-MS 22325148 10090 10090 BIOGRID
Rybp Pcgf2 Affinity Capture-MS 22325148 10090 10090 BIOGRID
Rybp Pcgf2 Affinity Capture-Western 22325148 10090 10090 BIOGRID
Rybp Rnf2 Affinity Capture-Western 22325148 10090 10090 BIOGRID
Rybp Rybp Affinity Capture-Western 22325148 10090 10090 BIOGRID
Rybp Ddx5 Affinity Capture-Western 28111200 10090 10090 BIOGRID
Rybp Rnf2 Affinity Capture-Western 28111200 10090 10090 BIOGRID
Rybp Pou5f1 Affinity Capture-Western 28111200 10090 10090 BIOGRID
Rybp Rnf2 Co-fractionation 28111200 10090 10090 BIOGRID
Rybp Pou5f1 Co-fractionation 28111200 10090 10090 BIOGRID
 Annotation of Rybp
 Disease information of Rybp