TcoF overview
| TcoF: | Smarca5 | |
| GeneID: | 93762 | |
| Name: | SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 | |
| Ensembl: | ENSMUSG00000031715 | |
| Species: | Mouse | |
| Class: | NA | |
| Family: | SWI/SNF | |
| Disease: | -- | |
| Go-trem: | 26 | |
| Pathway: | 7 | |
| Super Enhancer: | chr8:80764587-80765109 chr8:80731981-80732676 chr8:80711077-80711719 chr8:80707803-80715745 chr8:80750259-80753448 chr8:80728887-80729575 chr8:80728861-80729806 chr8:80735767-80736426 chr8:80732130-80743447 chr8:80750503-80753723 chr8:80688067-80688583 |
|
| Enhancer: |
ps:144780560-144784820 ps:144819000-144822400 ps:144826160-144836620 chr8:83260660-83262820 chr8:83353370-83366480 chr8:83400180-83403430 chr8:83436040-83438150 chr8:83442200-83450300 ps:144866500-144866790 ps:144836230-144836620 ps:145335040-145335800 chr8:83262040-83262820 chr8:83262020-83262820 ps:144819000-144821570 ps:144822790-144836620 ps:144846770-144848720 ps:144903330-144904920 ps:144942840-144944810 ps:144950180-144951550 ps:144799060-144802270 ps:144832420-144833690 ps:144901850-144903730 ps:144903900-144904920 ps:144950170-144951500 ps:144955690-144959260 chr8:83261940-83262820 chr8:83261820-83262820 chr8:83261450-83262820 chr8:83392940-83398120 chr8:83261410-83262820 chr8:83346300-83355860 chr8:83261480-83262820 ps:144811760-144812400 ps:144819000-144819990 chr8:82987490-82988110 chr8:83262490-83262820 chr8:83316880-83318930 chr8:83262160-83262820 ps:144700940-144703350 ps:144798600-144802270 ps:144812890-144813400 ps:144813480-144814150 ps:144819000-144822340 ps:144822640-144836620 ps:144846770-144858870 ps:144859130-144864180 ps:144867450-144872360 ps:145371060-145372760 ps:144864390-144867420 ps:144895400-144896000 ps:144903940-144904920 ps:145021490-145023330 ps:145103210-145108380 ps:145230070-145231460 ps:145262720-145268860 ps:144799060-144800570 chr8:83262070-83262820 chr8:83382260-83384020 chr8:83018720-83019120 chr8:83019330-83020200 chr8:83020280-83020610 chr8:83020690-83024820 chr8:83024900-83026630 chr8:83206470-83207210 chr8:83262220-83262820 ps:144693590-144695700 ps:144796600-144801560 ps:144835190-144836620 ps:144859780-144864180 ps:144894060-144898160 ps:144903970-144904920 ps:144955240-144957140 ps:145021360-145027150 ps:145101200-145108750 ps:145229880-145232880 ps:145262720-145268950 ps:145370600-145372720 chr8:83017980-83018480 chr8:83367460-83385860 chr8:83434640-83436410 chr8:83441490-83443850 ps:144835180-144836620 ps:145021530-145025510 ps:145230020-145231820 chr8:83261910-83262820 chr8:83381700-83383940 chr8:83396060-83397410 chr8:83261900-83262820 chr8:83261720-83262820 chr8:83261030-83262820 chr8:83017980-83019190 chr8:83019280-83020200 chr8:83024900-83026950 chr8:83026990-83027650 chr8:83183340-83187260 chr8:83187410-83188270 chr8:83206160-83210760 chr8:83183860-83186410 ps:144822730-144824560 ps:144836070-144836620 ps:144847800-144848420 ps:144851030-144852020 ps:144859130-144860520 ps:144866190-144867200 chr8:83442910-83443680 chr8:83467650-83468070 chr8:83353900-83355480 chr8:83375060-83377980 chr8:83344820-83346300 chr8:83261970-83262820 chr8:83261240-83262820 chr8:83305210-83305670 chr8:83348720-83352380 chr8:83366650-83373480 chr8:83375030-83378510 chr8:83380530-83380850 chr8:83431620-83432780 chr8:83440080-83441240 chr8:83344620-83346210 chr8:83361000-83363100 chr8:83262460-83262820 chr8:83371420-83372430 ps:144836180-144836620 chr8:83261750-83262820 ps:144893060-144899400 ps:145020160-145030640 ps:145099720-145109870 ps:144796600-144802260 chr8:83261960-83262820 chr8:83334650-83336610 chr8:83346960-83347840 chr8:83350740-83351390 chr8:83371220-83373330 chr8:83397380-83398410 chr8:83345390-83346110 chr8:83361660-83362630 chr8:83017980-83019000 chr8:83302600-83308520 chr8:83340600-83350400 chr8:83367000-83382600 chr8:83391000-83399800 ps:144835900-144836620 chr8:83331720-83333120 chr8:83403220-83403430 chr8:83419400-83420200 chr8:83261470-83262820 chr8:83332160-83332970 chr8:83337780-83339430 chr8:83354120-83355490 chr8:83371360-83374380 chr8:83376810-83378050 chr8:83380580-83381340 chr8:83418670-83420230 chr8:83436470-83437860 chr8:83018740-83019140 chr8:83019400-83020200 chr8:83020690-83023060 chr8:83023140-83024820 chr8:83024900-83026620 chr8:83184220-83186170 chr8:83205700-83207440 chr8:83210680-83210760 chr8:83261430-83262820 chr8:83380010-83381330 chr8:83418740-83420230 chr8:83431570-83432780 chr8:83436180-83438170 chr8:83361700-83362660 chr8:83375440-83377990 chr8:83380630-83381390 chr8:83439930-83441700 chr8:83476280-83476950 chr8:83304890-83305900 chr8:83332050-83332830 chr8:83334570-83335740 chr8:83350690-83351110 chr8:83354090-83355480 chr8:83371940-83373750 chr8:83376250-83377950 chr8:83380490-83381330 chr8:83381610-83382830 chr8:83355970-83365520 chr8:83379240-83383380 chr8:82986150-82988760 chr8:83018740-83019020 chr8:83019480-83020200 chr8:83183900-83187260 chr8:83187410-83188220 chr8:83205850-83209360 chr8:83261700-83262820 chr8:83377280-83378000 chr8:83472110-83473140 chr8:83506500-83507280 chr8:83181490-83182160 chr8:83262050-83262820 chr8:83326150-83330910 chr8:83261890-83262820 ps:144799410-144802270 chr8:83261180-83262820 chr8:83305070-83305710 chr8:83326920-83329510 chr8:83334690-83336260 chr8:83353770-83356170 chr8:83436080-83438130 chr8:83361840-83362940 chr8:83262210-83262820 ps:144701540-144702560 ps:144810920-144812850 ps:144819000-144822300 ps:144822740-144825620 ps:144828720-144836620 ps:144846770-144852410 ps:144870060-144872370 ps:145371170-145372120 ps:144686220-144687910 ps:144865340-144867420 chr8:83262200-83262820 chr8:83436570-83437540 chr8:83439650-83441100 chr8:83442420-83443920 chr8:83475350-83477280 ps:144620900-144634860 ps:144635030-144635930 ps:144636560-144644010 ps:144644160-144646370 ps:144646460-144647310 ps:144700940-144704600 ps:144819000-144822180 ps:144822700-144828230 ps:144870030-144871570 ps:144719550-144721500 ps:144735960-144738210 chr8:83303420-83305920 chr8:83355830-83367320 chr8:83367390-83381420 chr8:83533030-83536060 chr8:83262230-83262820 chr8:83334250-83336060 chr8:83376120-83377240 ps:145229610-145232230 chr8:83123560-83124930 chr8:83260660-83262680 chr8:83382690-83384340 chr8:83603350-83606520 chr8:83262340-83262820 chr8:84020470-84022020 ps:144868560-144869150 chr8:83261810-83262820 chr8:83304840-83305900 chr8:83354050-83355500 chr8:83370780-83373950 chr8:83376290-83378010 chr8:83381680-83382900 chr8:83361620-83362630 chr8:83262260-83262820 chr8:83261760-83262820 chr8:83382810-83383900 chr8:83402650-83403430 ps:144819000-144822200 ps:144846770-144849590 ps:144849760-144858870 chr8:83260930-83262820 ps:144608750-144610030 ps:144819000-144822070 ps:144825050-144827660 ps:144831890-144836620 ps:144846770-144848370 ps:144903620-144904920 ps:144799760-144802250 ps:144810420-144812850 ps:144819000-144820360 ps:144832520-144833370 ps:144834750-144836620 chr8:83261950-83262820 chr8:83262670-83262820 chr8:83334820-83336030 chr8:83371680-83372340 chr8:83361700-83362710 ps:144796850-144801580 ps:144860760-144864180 ps:144894740-144898380 ps:145021650-145024800 ps:145103270-145108410 ps:145230160-145231990 ps:145262720-145268970 chr8:83262170-83262820 ps:144870240-144872250 chr8:83261880-83262820 ps:144836390-144836620 ps:144895540-144896190 ps:145021640-145024960 ps:145029370-145030320 ps:145105640-145106650 ps:145230240-145231260 ps:145263840-145265940 chr8:83382920-83383680 chr8:83442390-83443480 |
|
| Promoter: |
chr8:80737459-80741459 |
ChIP-seq based regulatory details of Smarca5
| Sample ID | Experiment target | Biosample term name | Cell type | Tissue type | Source |
|---|---|---|---|---|---|
| TcoF_01_22127 | Smarca5 | None | Embryonic Stem Cell | None | Cistrome |
| TcoF_01_22126 | Smarca5 | None | Embryonic Stem Cell | None | Cistrome |
| TcoF_01_22125 | Smarca5 | None | Embryonic Fibroblast | None | Cistrome |
| TcoF_01_22124 | Smarca5 | None | None | Nucleus Accumben | Cistrome |
| TcoF_01_22123 | Smarca5 | None | None | Nucleus Accumben | Cistrome |
| TcoF_01_22122 | Smarca5 | None | None | Nucleus Accumben | Cistrome |
| TcoF_01_22121 | Smarca5 | 3134 | Epithelium | Mammary Gland | Cistrome |
| TcoF_01_22120 | Smarca5 | 3134 | Epithelium | Mammary Gland | Cistrome |
Downstream target genes of Smarca5
Protein-protein interaction of Smarca5
| OFFICIAL_SYMBOL_A | OFFICIAL_SYMBOL_B | EXPERIMENTAL_SYSTEM | PUBMED_ID | ORGANISM_A_ID | ORGANISM_B_ID | SOURCE |
|---|---|---|---|---|---|---|
| Smarca5 | Baz1b | Affinity Capture-Western | 11980720 | 10090 | 10090 | BIOGRID |
| Smarca5 | Baz1a | Affinity Capture-Western | 11980720 | 10090 | 10090 | BIOGRID |
| Smarca5 | Cenpk | Co-fractionation | 32325033 | 10090 | 10090 | BIOGRID |
Annotation of Smarca5
Expression of Smarca5
Disease information of Smarca5