TcoF overview
| TcoF: | CBX3 | |
| GeneID: | 57332 | |
| Name: | Chromobox protein homolog 3 | |
| Ensembl: | ENSG00000122565 | |
| Species: | Human | |
| Class: | class HC | |
| Family: | Chromobox | |
| Disease: | 0 | |
| Go term: | 24 | |
| Pathway: | 2 | |
| Hallmark: | -- | |
| Super Enhancer: |
chr7:26238704-26242941 chr7:26235290-26246240 chr7:26238813-26242769 chr7:26238841-26242692 chr7:26237907-26256542 chr7:26238091-26243806 chr7:26238738-26242922 chr7:26238700-26243183 chr7:26238715-26242816 chr7:26238496-26243303 chr7:26238816-26243077 chr7:26236315-26245481 chr7:26238803-26243112 chr7:26237785-26245818 chr7:26238213-26243658 chr7:26238745-26243186 chr7:26238639-26243145 chr7:26237739-26245679 chr7:26238090-26243954 chr7:26236301-26248081 chr7:26236983-26245801 chr7:26237861-26244842 chr7:26238226-26243834 chr7:26237842-26243758 chr7:26237134-26245076 chr7:26238017-26243731 chr7:26237911-26243765 chr7:26237905-26243648 chr7:26237947-26244424 chr7:26236938-26245189 chr7:26238570-26243021 |
|
| Enhancer: |
chr7:26205520-26207930 chr7:26488210-26490550 chr7:26588890-26590130 chr7:26223400-26224150 chr7:26233320-26235460 chr7:26192690-26194800 chr7:26529940-26531680 chr7:26595500-26596490 chr7:26652320-26654410 chr7:26667080-26669140 chr7:25898480-25899440 chr7:25899850-25901100 chr7:26140490-26142420 chr7:26331750-26334230 chr7:26479700-26481860 chr7:26697400-26699260 chr7:26427110-26429040 chr7:26226760-26229240 chr7:26235530-26235830 chr7:25917260-25918200 chr7:25979140-25981620 chr7:26353080-26354840 chr7:26373200-26375490 chr7:25901140-25903530 chr7:26231960-26232110 chr7:26232200-26232870 chr7:25683390-25683950 chr7:25695790-25696920 chr7:25699580-25700300 chr7:25846350-25848620 chr7:25940070-25941770 chr7:25656900-25657370 chr7:25704720-25706560 chr7:25843620-25844230 chr7:26122370-26124510 chr7:26128100-26129860 chr7:26360630-26361870 chr7:25817460-25818000 chr7:26003820-26006060 chr7:26006500-26008990 chr7:26136340-26138410 chr7:26221610-26223320 chr7:26233020-26233190 chr7:26245410-26245750 chr7:26253230-26254890 chr7:25842020-25842620 chr7:26125140-26125780 chr7:26590140-26590810 chr7:26304500-26306500 chr7:25984400-25986360 chr7:25870390-25871980 chr7:26375580-26377680 chr7:26385070-26386030 chr7:25791900-25794130 chr7:26112600-26113320 chr7:26210360-26210830 chr7:26554780-26556700 |
|
| Promoter: |
chr7:26240782-26253227 |
ChIP-seq based regulatory details of CBX3
| Sample ID | Experiment target | Biosample type | Biosample term name | GSM ID | Tissue type | Source |
|---|---|---|---|---|---|---|
| TcoF_00_10010 | CBX3 | cell line | GM12878 | - | Blood | ENCODE |
| TcoF_00_20678 | CBX3 | cell line | K562 | GSM1003568 | Bone Marrow | Cistrome |
| TcoF_00_40365 | CBX3 | cell line | K-562 | GSM1003568 | Bone Marrow | ReMap |
| TcoF_00_20063 | CBX3 | cell line | K562 | GSM1010732 | Bone Marrow | Cistrome |
| TcoF_00_40400 | CBX3 | cell line | K-562 | GSM1010732 | Bone Marrow | ReMap |
| TcoF_00_20363 | CBX3 | cell line | HCT-116 | GSM1010758 | Colon | Cistrome |
| TcoF_00_40410 | CBX3 | cell line | HCT-116 | GSM1010758 | Colon | ReMap |
| TcoF_00_40888 | CBX3 | cell line | T-47D-MTVL | GSM1571866 | Breast | ReMap |
| TcoF_00_40889 | CBX3 | cell line | T-47D-MTVL_BPTF | GSM1571867 | Breast | ReMap |
| TcoF_00_20405 | CBX3 | cell line | HCT-116 | GSM699727 | Colon | Cistrome |
| TcoF_00_20406 | CBX3 | cell line | HCT-116 | GSM699729 | Colon | Cistrome |
| TcoF_00_20407 | CBX3 | cell line | HCT-116 | GSM699734 | Colon | Cistrome |
| TcoF_00_20408 | CBX3 | cell line | HCT-116 | GSM699735 | Colon | Cistrome |
| TcoF_00_20750 | CBX3 | cell line | K562 | GSM830999 | Bone Marrow | Cistrome |
| TcoF_00_20409 | CBX3 | cell line | HCT-116 | GSM898224 | Colon | Cistrome |
| TcoF_00_20410 | CBX3 | cell line | HCT-116 | GSM898225 | Colon | Cistrome |
Downstream target genes of CBX3
Upstream regulatory details of CBX3
Protein-protein interaction of CBX3
| OFFICIAL_SYMBOL_A | OFFICIAL_SYMBOL_B | EXPERIMENTAL_SYSTEM | PUBMED_ID | ORGANISM_A_ID | ORGANISM_B_ID | SOURCE |
|---|---|---|---|---|---|---|
| CBX3 | LBR | Two-hybrid | 8663349 | 9606 | 9606 | BIOGRID |
| CBX3 | SP100 | Affinity Capture-Western | 9636147 | 9606 | 9606 | BIOGRID |
| CBX3 | SP100 | Reconstituted Complex | 9636147 | 9606 | 9606 | BIOGRID |
| CBX3 | SP100 | Two-hybrid | 9636147 | 9606 | 9606 | BIOGRID |
| CBX3 | TRIM28 | Affinity Capture-Western | 11336697 | 9606 | 9606 | BIOGRID |
| CBX3 | CBX1 | Affinity Capture-Western | 11336697 | 9606 | 9606 | BIOGRID |
| CBX3 | CBX3 | Affinity Capture-Western | 11336697 | 9606 | 9606 | BIOGRID |
| CBX3 | CBX5 | Affinity Capture-Western | 11336697 | 9606 | 9606 | BIOGRID |
| CBX3 | CBX1 | Reconstituted Complex | 11336697 | 9606 | 9606 | BIOGRID |
| CBX3 | CBX3 | Reconstituted Complex | 11336697 | 9606 | 9606 | BIOGRID |
| CBX3 | CBX5 | Reconstituted Complex | 11336697 | 9606 | 9606 | BIOGRID |
| CBX3 | PIM1 | Reconstituted Complex | 10664448 | 9606 | 9606 | BIOGRID |
| CBX3 | RING1 | Affinity Capture-Western | 12004135 | 9606 | 9606 | BIOGRID |
| CBX3 | E2F6 | Affinity Capture-Western | 12004135 | 9606 | 9606 | BIOGRID |
| CBX3 | YAF2 | Affinity Capture-Western | 12004135 | 9606 | 9606 | BIOGRID |
| CBX3 | PCGF6 | Affinity Capture-Western | 12004135 | 9606 | 9606 | BIOGRID |
| CBX3 | HIST1H1E | Co-purification | 19144645 | 9606 | 9606 | BIOGRID |
| CBX3 | TRIM28 | Two-hybrid | 20936779 | 9606 | 9606 | BIOGRID |
| CBX3 | MGA | Two-hybrid | 20936779 | 9606 | 9606 | BIOGRID |
| CBX3 | WHSC1L1 | Two-hybrid | 20936779 | 9606 | 9606 | BIOGRID |
| CBX3 | RELB | Co-localization | 19690169 | 9606 | 9606 | BIOGRID |
| CBX3 | POLR2A | Affinity Capture-Western | 16061184 | 9606 | 9606 | BIOGRID |
| CBX3 | DNMT3B | Reconstituted Complex | 15120635 | 9606 | 9606 | BIOGRID |
| CBX3 | TRIM28 | Reconstituted Complex | 10330177 | 9606 | 9606 | BIOGRID |
| CBX3 | TRIM28 | Affinity Capture-Western | 20675861 | 9606 | 9606 | BIOGRID |
| CBX3 | HIST1H3A | Reconstituted Complex | 20011120 | 9606 | 9606 | BIOGRID |
| CBX3 | L3MBTL2 | Affinity Capture-Western | 21596310 | 9606 | 9606 | BIOGRID |
| CBX3 | CHD4 | Affinity Capture-MS | 21888893 | 9606 | 9606 | BIOGRID |
| CBX3 | POGZ | Affinity Capture-MS | 21888893 | 9606 | 9606 | BIOGRID |
| CBX3 | ADNP | Affinity Capture-MS | 21888893 | 9606 | 9606 | BIOGRID |
| CBX3 | ZNF280D | Affinity Capture-MS | 21888893 | 9606 | 9606 | BIOGRID |
| CBX3 | TRIM28 | Affinity Capture-MS | 21888893 | 9606 | 9606 | BIOGRID |
| CBX3 | XRCC6 | Affinity Capture-MS | 21888893 | 9606 | 9606 | BIOGRID |
| CBX3 | ZNF8 | Affinity Capture-MS | 21888893 | 9606 | 9606 | BIOGRID |
| CBX3 | CBX3 | Affinity Capture-MS | 21888893 | 9606 | 9606 | BIOGRID |
| CBX3 | CBX5 | Affinity Capture-MS | 21888893 | 9606 | 9606 | BIOGRID |
| CBX3 | H2AFB1 | Affinity Capture-MS | 21888893 | 9606 | 9606 | BIOGRID |
| CBX3 | HIST1H4F | Affinity Capture-MS | 21888893 | 9606 | 9606 | BIOGRID |
| CBX3 | ADNP | Affinity Capture-Western | 21888893 | 9606 | 9606 | BIOGRID |
| CBX3 | ADNP2 | Affinity Capture-Western | 21888893 | 9606 | 9606 | BIOGRID |
| CBX3 | POLR2A | Affinity Capture-Western | 22684280 | 9606 | 9606 | BIOGRID |
| CBX3 | HIST1H1E | Protein-peptide | 22514736 | 9606 | 9606 | BIOGRID |
| CBX3 | EHMT2 | Protein-peptide | 22514736 | 9606 | 9606 | BIOGRID |
| CBX3 | HIST1H1E | Co-crystal Structure | 22514736 | 9606 | 9606 | BIOGRID |
| CBX3 | EHMT2 | Co-crystal Structure | 22514736 | 9606 | 9606 | BIOGRID |
| CBX3 | KLF11 | Reconstituted Complex | 22318730 | 9606 | 9606 | BIOGRID |
| CBX3 | TNKS1BP1 | Co-fractionation | 22939629 | 9606 | 9606 | BIOGRID |
| CBX3 | H2AFY | Co-fractionation | 22939629 | 9606 | 9606 | BIOGRID |
| CBX3 | ADSS | Co-fractionation | 22863883 | 9606 | 9606 | BIOGRID |
| CBX3 | DCK | Co-fractionation | 22863883 | 9606 | 9606 | BIOGRID |
| CBX3 | HSPE1 | Co-fractionation | 22863883 | 9606 | 9606 | BIOGRID |
| CBX3 | IDH1 | Co-fractionation | 22863883 | 9606 | 9606 | BIOGRID |
| CBX3 | OXCT1 | Co-fractionation | 22863883 | 9606 | 9606 | BIOGRID |
| CBX3 | PTMS | Co-fractionation | 22863883 | 9606 | 9606 | BIOGRID |
| CBX3 | TALDO1 | Co-fractionation | 22863883 | 9606 | 9606 | BIOGRID |
| CBX3 | THOP1 | Co-fractionation | 22863883 | 9606 | 9606 | BIOGRID |
| CBX3 | WDR1 | Co-fractionation | 22863883 | 9606 | 9606 | BIOGRID |
| CBX3 | HIST1H3A | Co-crystal Structure | 24576085 | 9606 | 9606 | BIOGRID |
| CBX3 | HIST1H3A | Protein-peptide | 24576085 | 9606 | 9606 | BIOGRID |
| CBX3 | ADNP | Affinity Capture-MS | 20850016 | 9606 | 9606 | BIOGRID |
| CBX3 | POGZ | Affinity Capture-MS | 20850016 | 9606 | 9606 | BIOGRID |
| CBX3 | CBX5 | Affinity Capture-MS | 20850016 | 9606 | 9606 | BIOGRID |
| CBX3 | CHAF1A | Affinity Capture-MS | 20850016 | 9606 | 9606 | BIOGRID |
| CBX3 | MGA | Affinity Capture-MS | 20850016 | 9606 | 9606 | BIOGRID |
| CBX3 | TRIM28 | Affinity Capture-MS | 20850016 | 9606 | 9606 | BIOGRID |
| CBX3 | CHAF1B | Affinity Capture-MS | 20850016 | 9606 | 9606 | BIOGRID |
| CBX3 | NIPBL | Affinity Capture-MS | 20850016 | 9606 | 9606 | BIOGRID |
| CBX3 | FAF1 | Co-fractionation | 26344197 | 9606 | 9606 | BIOGRID |
| CBX3 | SYAP1 | Co-fractionation | 26344197 | 9606 | 9606 | BIOGRID |
| CBX3 | BARD1 | PCA | 25634209 | 9606 | 9606 | BIOGRID |
| CBX3 | BARD1 | Affinity Capture-Western | 25634209 | 9606 | 9606 | BIOGRID |
| CBX3 | BARD1 | Reconstituted Complex | 25634209 | 9606 | 9606 | BIOGRID |
| CBX3 | CUL4B | Affinity Capture-Western | 24292684 | 9606 | 9606 | BIOGRID |
| CBX3 | ADNP | Affinity Capture-MS | 27705803 | 9606 | 9606 | BIOGRID |
| CBX3 | ADNP2 | Affinity Capture-MS | 27705803 | 9606 | 9606 | BIOGRID |
| CBX3 | AHDC1 | Affinity Capture-MS | 27705803 | 9606 | 9606 | BIOGRID |
| CBX3 | ARG1 | Affinity Capture-MS | 27705803 | 9606 | 9606 | BIOGRID |
| CBX3 | CHAF1A | Affinity Capture-MS | 27705803 | 9606 | 9606 | BIOGRID |
| CBX3 | CHAF1B | Affinity Capture-MS | 27705803 | 9606 | 9606 | BIOGRID |
| CBX3 | CBX1 | Affinity Capture-MS | 27705803 | 9606 | 9606 | BIOGRID |
| CBX3 | CBX5 | Affinity Capture-MS | 27705803 | 9606 | 9606 | BIOGRID |
| CBX3 | CCDC71L | Affinity Capture-MS | 27705803 | 9606 | 9606 | BIOGRID |
| CBX3 | CHAMP1 | Affinity Capture-MS | 27705803 | 9606 | 9606 | BIOGRID |
| CBX3 | CHD4 | Affinity Capture-MS | 27705803 | 9606 | 9606 | BIOGRID |
| CBX3 | C19orf68 | Affinity Capture-MS | 27705803 | 9606 | 9606 | BIOGRID |
| CBX3 | DSN1 | Affinity Capture-MS | 27705803 | 9606 | 9606 | BIOGRID |
| CBX3 | DYNLL1 | Affinity Capture-MS | 27705803 | 9606 | 9606 | BIOGRID |
| CBX3 | E2F6 | Affinity Capture-MS | 27705803 | 9606 | 9606 | BIOGRID |
| CBX3 | EHMT1 | Affinity Capture-MS | 27705803 | 9606 | 9606 | BIOGRID |
| CBX3 | EHMT2 | Affinity Capture-MS | 27705803 | 9606 | 9606 | BIOGRID |
| CBX3 | H3F3A | Affinity Capture-MS | 27705803 | 9606 | 9606 | BIOGRID |
| CBX3 | H3F3B | Affinity Capture-MS | 27705803 | 9606 | 9606 | BIOGRID |
| CBX3 | HDAC2 | Affinity Capture-MS | 27705803 | 9606 | 9606 | BIOGRID |
| CBX3 | KPNA6 | Affinity Capture-MS | 27705803 | 9606 | 9606 | BIOGRID |
| CBX3 | L3MBTL2 | Affinity Capture-MS | 27705803 | 9606 | 9606 | BIOGRID |
| CBX3 | LRIF1 | Affinity Capture-MS | 27705803 | 9606 | 9606 | BIOGRID |
| CBX3 | MAX | Affinity Capture-MS | 27705803 | 9606 | 9606 | BIOGRID |
| CBX3 | MAD2L2 | Affinity Capture-MS | 27705803 | 9606 | 9606 | BIOGRID |
| CBX3 | MGA | Affinity Capture-MS | 27705803 | 9606 | 9606 | BIOGRID |
| CBX3 | MIS12 | Affinity Capture-MS | 27705803 | 9606 | 9606 | BIOGRID |
| CBX3 | MYL12B | Affinity Capture-MS | 27705803 | 9606 | 9606 | BIOGRID |
| CBX3 | MSL1 | Affinity Capture-MS | 27705803 | 9606 | 9606 | BIOGRID |
| CBX3 | NSL1 | Affinity Capture-MS | 27705803 | 9606 | 9606 | BIOGRID |
| CBX3 | PCGF6 | Affinity Capture-MS | 27705803 | 9606 | 9606 | BIOGRID |
| CBX3 | PMF1-BGLAP | Affinity Capture-MS | 27705803 | 9606 | 9606 | BIOGRID |
| CBX3 | PMF1 | Affinity Capture-MS | 27705803 | 9606 | 9606 | BIOGRID |
| CBX3 | POGZ | Affinity Capture-MS | 27705803 | 9606 | 9606 | BIOGRID |
| CBX3 | PRR14 | Affinity Capture-MS | 27705803 | 9606 | 9606 | BIOGRID |
| CBX3 | RB1 | Affinity Capture-MS | 27705803 | 9606 | 9606 | BIOGRID |
| CBX3 | RBBP4 | Affinity Capture-MS | 27705803 | 9606 | 9606 | BIOGRID |
| CBX3 | RCN2 | Affinity Capture-MS | 27705803 | 9606 | 9606 | BIOGRID |
| CBX3 | RING1 | Affinity Capture-MS | 27705803 | 9606 | 9606 | BIOGRID |
| CBX3 | RNF2 | Affinity Capture-MS | 27705803 | 9606 | 9606 | BIOGRID |
| CBX3 | RPL35A | Affinity Capture-MS | 27705803 | 9606 | 9606 | BIOGRID |
| CBX3 | RLF | Affinity Capture-MS | 27705803 | 9606 | 9606 | BIOGRID |
| CBX3 | RYBP | Affinity Capture-MS | 27705803 | 9606 | 9606 | BIOGRID |
| CBX3 | SCAI | Affinity Capture-MS | 27705803 | 9606 | 9606 | BIOGRID |
| CBX3 | SENP7 | Affinity Capture-MS | 27705803 | 9606 | 9606 | BIOGRID |
| CBX3 | SCGB2A1 | Affinity Capture-MS | 27705803 | 9606 | 9606 | BIOGRID |
| CBX3 | SPRR1B | Affinity Capture-MS | 27705803 | 9606 | 9606 | BIOGRID |
| CBX3 | SUV39H1 | Affinity Capture-MS | 27705803 | 9606 | 9606 | BIOGRID |
| CBX3 | TFDP1 | Affinity Capture-MS | 27705803 | 9606 | 9606 | BIOGRID |
| CBX3 | TRIM28 | Affinity Capture-MS | 27705803 | 9606 | 9606 | BIOGRID |
| CBX3 | WDR5 | Affinity Capture-MS | 27705803 | 9606 | 9606 | BIOGRID |
| CBX3 | WIZ | Affinity Capture-MS | 27705803 | 9606 | 9606 | BIOGRID |
| CBX3 | YAF2 | Affinity Capture-MS | 27705803 | 9606 | 9606 | BIOGRID |
| CBX3 | ZNF280C | Affinity Capture-MS | 27705803 | 9606 | 9606 | BIOGRID |
| CBX3 | ZNF280D | Affinity Capture-MS | 27705803 | 9606 | 9606 | BIOGRID |
| CBX3 | ZNF518A | Affinity Capture-MS | 27705803 | 9606 | 9606 | BIOGRID |
| CBX3 | ZNF518B | Affinity Capture-MS | 27705803 | 9606 | 9606 | BIOGRID |
| CBX3 | ZMYM3 | Affinity Capture-MS | 27705803 | 9606 | 9606 | BIOGRID |
| CBX3 | ZMYM4 | Affinity Capture-MS | 27705803 | 9606 | 9606 | BIOGRID |
| CBX3 | ZNF292 | Affinity Capture-MS | 27705803 | 9606 | 9606 | BIOGRID |
| CBX3 | ZNF462 | Affinity Capture-MS | 27705803 | 9606 | 9606 | BIOGRID |
| CBX3 | ZNF644 | Affinity Capture-MS | 27705803 | 9606 | 9606 | BIOGRID |
| CBX3 | ZNF689 | Affinity Capture-MS | 27705803 | 9606 | 9606 | BIOGRID |
| CBX3 | HECW2 | Affinity Capture-Western | 30208514 | 9606 | 9606 | BIOGRID |
| CBX3 | HIPK2 | Affinity Capture-Western | 25151962 | 9606 | 9606 | BIOGRID |
| CBX3 | BRCA1 | Affinity Capture-Western | 23074186 | 9606 | 9606 | BIOGRID |
| CBX3 | BARD1 | Reconstituted Complex | 30874560 | 9606 | 9606 | BIOGRID |
| CBX3 | GDF15 | Two-hybrid | 32296183 | 9606 | 9606 | BIOGRID |
| CBX3 | ZNF280D | Two-hybrid | 32296183 | 9606 | 9606 | BIOGRID |
| CBX3 | ADAMTSL4 | Two-hybrid | 32296183 | 9606 | 9606 | BIOGRID |
| CBX3 | PRR14 | Two-hybrid | 32296183 | 9606 | 9606 | BIOGRID |
| CBX3 | RAD54L2 | Two-hybrid | 32296183 | 9606 | 9606 | BIOGRID |
| CBX3 | MRPL12 | Two-hybrid | 32296183 | 9606 | 9606 | BIOGRID |
| CBX3 | XPO1 | Affinity Capture-Western | 32203172 | 9606 | 9606 | BIOGRID |
| CBX3 | ADNP | Reconstituted Complex | 29795351 | 9606 | 9606 | BIOGRID |
| CBX3 | CBX1 | Affinity Capture-MS | 24981860 | 9606 | 9606 | BIOGRID |
| CBX3 | L3MBTL2 | Affinity Capture-MS | 24981860 | 9606 | 9606 | BIOGRID |
| CBX3 | PCGF6 | Affinity Capture-MS | 24981860 | 9606 | 9606 | BIOGRID |
| CBX3 | MIS12 | Affinity Capture-MS | 24981860 | 9606 | 9606 | BIOGRID |
| CBX3 | MGA | Affinity Capture-MS | 24981860 | 9606 | 9606 | BIOGRID |
| CBX3 | WDR5 | Affinity Capture-MS | 24981860 | 9606 | 9606 | BIOGRID |
| CBX3 | CHAF1B | Affinity Capture-MS | 24981860 | 9606 | 9606 | BIOGRID |
| CBX3 | EHMT2 | Affinity Capture-MS | 24981860 | 9606 | 9606 | BIOGRID |
| CBX3 | PCGF3 | Affinity Capture-MS | 24981860 | 9606 | 9606 | BIOGRID |
| CBX3 | CBX6 | Affinity Capture-MS | 24981860 | 9606 | 9606 | BIOGRID |
| CBX3 | SUV39H1 | Affinity Capture-MS | 24981860 | 9606 | 9606 | BIOGRID |
| CBX3 | RNF2 | Affinity Capture-MS | 24981860 | 9606 | 9606 | BIOGRID |
| CBX3 | BCOR | Affinity Capture-MS | 24981860 | 9606 | 9606 | BIOGRID |
| CBX3 | CCDC71L | Affinity Capture-MS | 24981860 | 9606 | 9606 | BIOGRID |
| CBX3 | Pax3 | Reconstituted Complex | 16945326 | 9606 | 10090 | BIOGRID |
Annotation of CBX3
TCGA cancer survival map of CBX3
Expression of CBX3
Disease information of CBX3