TcoF overview
| TcoF: | CBX4 | |
| GeneID: | 57805 | |
| Name: | E3 SUMO-protein ligase CBX4 | |
| Ensembl: | ENSG00000141582 | |
| Species: | Human | |
| Class: | class HC | |
| Family: | Chromobox | |
| Disease: | 0 | |
| Go term: | 18 | |
| Pathway: | 5 | |
| Hallmark: | 2 | |
| Super Enhancer: |
chr17:77860703-77886935 chr17:77862517-77910414 chr17:77773228-77788164 chr17:77771138-77788611 chr17:77781947-77791226 chr17:77782645-77789373 chr17:77772676-77788856 chr17:77782208-77790142 chr17:77782779-77788784 chr17:77804958-77827106 chr17:77809664-77827385 chr17:77809448-77827327 chr17:77802882-77818436 chr17:77810485-77820520 chr17:77804697-77827004 chr17:77804897-77827861 chr17:77805460-77819299 chr17:77804465-77819894 chr17:77803574-77813382 chr17:77810604-77821943 chr17:77805497-77819236 chr17:77809380-77819641 chr17:77805019-77827846 chr17:77804930-77827002 chr17:77804974-77827038 chr17:77804992-77826967 chr17:77810980-77827506 chr17:77805305-77818217 chr17:77810190-77841423 chr17:77804319-77815134 chr17:77802277-77827516 chr17:77804933-77827874 chr17:77804067-77819559 chr17:77803971-77835079 chr17:77805135-77819360 chr17:77804990-77827771 chr17:77810851-77820676 chr17:77805007-77827334 chr17:77804451-77827340 chr17:77804706-77820799 chr17:77809654-77827511 chr17:77807337-77819614 chr17:77802361-77832414 chr17:77804056-77827222 chr17:77804281-77820489 chr17:77804325-77827396 chr17:77802302-77827474 chr17:77802196-77827433 chr17:77802246-77820626 chr17:77804015-77827336 chr17:77775993-77811118 chr17:77773553-77819544 chr17:77793066-77819777 chr17:77793009-77819966 chr17:77800977-77827332 chr17:77782743-77818464 chr17:77801926-77818484 chr17:77782163-77818917 chr17:77782305-77826114 chr17:77774010-77830563 chr17:77774244-77819571 chr17:77783300-77827003 chr17:77777508-77814499 chr17:77801954-77827521 chr17:77889158-77907489 chr17:77889284-77907345 chr17:77891631-77912247 chr17:77898393-77908890 chr17:77897966-77906582 chr17:77880701-77909182 chr17:77891787-77921924 chr17:77763765-77826024 chr17:77893076-77907272 chr17:77889429-77906503 chr17:77866275-77908341 chr17:77889240-77908589 chr17:77889373-77906852 chr17:77889220-77908406 chr17:77893588-77912380 chr17:77885124-77907987 chr17:77880991-77910459 chr17:77875799-77908622 chr17:77892447-77929041 chr17:77891619-77927130 chr17:77884871-77906761 chr17:77769519-77819856 chr17:77769634-77827094 chr17:77769822-77819819 chr17:77769438-77819891 chr17:77769937-77819655 chr17:77888675-77927636 chr17:77888791-77908975 chr17:77878846-77931388 chr17:77890427-77910912 |
|
| Enhancer: |
chr17:77752220-77753160 chr17:77770330-77770720 chr17:77752110-77752180 chr17:77809510-77811630 chr17:77811700-77812800 chr17:78176430-78177620 chr17:78186070-78187600 chr17:78213260-78215560 chr17:78227310-78229650 chr17:78289170-78290980 chr17:78317130-78317650 chr17:78334010-78335530 chr17:78337120-78337400 chr17:78337590-78338230 chr17:78341650-78341760 chr17:78341940-78343300 chr17:78351050-78351560 chr17:78351590-78353410 chr17:78353520-78354630 chr17:78355530-78356770 chr17:78356870-78357470 chr17:78357730-78358830 chr17:78358970-78359330 chr17:78359420-78360040 chr17:78360230-78360480 chr17:78360690-78361920 chr17:78408020-78409930 chr17:77770120-77770290 chr17:77924380-77924550 chr17:77705160-77707300 chr17:77707450-77707710 chr17:78262560-78263450 chr17:78263640-78264360 chr17:78300080-78301610 chr17:77812850-77812980 chr17:77494440-77495380 chr17:77541440-77543670 chr17:77916010-77917650 chr17:78143860-78145870 chr17:77713920-77715590 chr17:77769920-77770040 chr17:77922810-77923510 chr17:77923660-77924200 chr17:78075690-78077850 chr17:77753230-77755490 chr17:77809200-77809440 chr17:78169450-78171890 chr17:78179450-78180760 chr17:77711060-77711710 chr17:77766030-77768170 chr17:78000210-78000920 chr17:78001700-78002200 chr17:78019110-78020260 chr17:78078010-78078350 chr17:77711860-77713720 chr17:77769360-77769850 chr17:77804590-77806950 chr17:77893640-77895200 chr17:77898870-77899490 chr17:77933470-77935740 chr17:78037100-78039280 chr17:78082630-78083740 chr17:78165270-78166300 chr17:77826180-77827410 chr17:77787210-77789610 chr17:77530320-77532240 chr17:78184810-78185860 chr17:78187680-78187970 chr17:78199200-78199630 chr17:78271630-78272120 chr17:78395760-78396000 chr17:78396040-78397310 chr17:78265630-78266880 chr17:77920350-77921440 chr17:78097560-78099000 chr17:78161720-78162170 chr17:78253430-78255470 chr17:77921630-77922670 chr17:77835640-77837300 chr17:77838400-77839280 chr17:77948360-77949800 chr17:77950630-77951800 chr17:77952120-77954100 chr17:78027500-78028700 chr17:78164700-78165120 chr17:78169130-78169350 chr17:78394760-78395620 chr17:78449520-78449800 chr17:78466420-78467520 chr17:78471580-78473340 chr17:77954120-77956490 chr17:78133450-78135670 chr17:78216790-78218660 chr17:78043740-78045690 chr17:77984950-77987160 chr17:77782190-77783900 |
|
| Promoter: |
chr17:77806955-77813239 |
ChIP-seq based regulatory details of CBX4
| Sample ID | Experiment target | Biosample type | Biosample term name | GSM ID | Tissue type | Source |
|---|---|---|---|---|---|---|
| TcoF_00_40274 | CBX4 | cell line | HEK293T | GSM1294941 | Embryonic Kidney | ReMap |
| TcoF_00_20450 | CBX4 | cell line | HEK293T | GSM1294942 | Embryonic Kidney | Cistrome |
Downstream target genes of CBX4
Upstream regulatory details of CBX4
Protein-protein interaction of CBX4
| OFFICIAL_SYMBOL_A | OFFICIAL_SYMBOL_B | EXPERIMENTAL_SYSTEM | PUBMED_ID | ORGANISM_A_ID | ORGANISM_B_ID | SOURCE |
|---|---|---|---|---|---|---|
| CBX4 | KMT2A | Reconstituted Complex | 12829790 | 9606 | 9606 | BIOGRID |
| CBX4 | CTBP1 | Reconstituted Complex | 12829790 | 9606 | 9606 | BIOGRID |
| CBX4 | BMI1 | Reconstituted Complex | 12829790 | 9606 | 9606 | BIOGRID |
| CBX4 | CTBP1 | Biochemical Activity | 12679040 | 9606 | 9606 | BIOGRID |
| CBX4 | RING1 | Two-hybrid | 9199346 | 9606 | 9606 | BIOGRID |
| CBX4 | RING1 | Affinity Capture-Western | 9199346 | 9606 | 9606 | BIOGRID |
| CBX4 | BMI1 | Affinity Capture-Western | 9199346 | 9606 | 9606 | BIOGRID |
| CBX4 | PHC1 | Affinity Capture-Western | 9199346 | 9606 | 9606 | BIOGRID |
| CBX4 | RB1 | Phenotypic Enhancement | 11583618 | 9606 | 9606 | BIOGRID |
| CBX4 | CTBP1 | Two-hybrid | 9858600 | 9606 | 9606 | BIOGRID |
| CBX4 | CTBP2 | Two-hybrid | 9858600 | 9606 | 9606 | BIOGRID |
| CBX4 | CTBP2 | Affinity Capture-Western | 9858600 | 9606 | 9606 | BIOGRID |
| CBX4 | KDM5B | Reconstituted Complex | 19336002 | 9606 | 9606 | BIOGRID |
| CBX4 | KDM5B | Affinity Capture-Western | 19336002 | 9606 | 9606 | BIOGRID |
| CBX4 | SUV39H1 | Reconstituted Complex | 12101246 | 9606 | 9606 | BIOGRID |
| CBX4 | SUV39H1 | Affinity Capture-Western | 12101246 | 9606 | 9606 | BIOGRID |
| CBX4 | DNMT3A | Affinity Capture-Western | 17439403 | 9606 | 9606 | BIOGRID |
| CBX4 | HIST3H3 | Biochemical Activity | 12700765 | 9606 | 9606 | BIOGRID |
| CBX4 | SNCA | Affinity Capture-Western | 21256122 | 9606 | 9606 | BIOGRID |
| CBX4 | RNF2 | Affinity Capture-MS | 22325352 | 9606 | 9606 | BIOGRID |
| CBX4 | PCGF2 | Affinity Capture-MS | 22325352 | 9606 | 9606 | BIOGRID |
| CBX4 | BMI1 | Affinity Capture-MS | 22325352 | 9606 | 9606 | BIOGRID |
| CBX4 | RING1 | Affinity Capture-MS | 22325352 | 9606 | 9606 | BIOGRID |
| CBX4 | PHC1 | Affinity Capture-MS | 22325352 | 9606 | 9606 | BIOGRID |
| CBX4 | PHC2 | Affinity Capture-MS | 22325352 | 9606 | 9606 | BIOGRID |
| CBX4 | PHC3 | Affinity Capture-MS | 22325352 | 9606 | 9606 | BIOGRID |
| CBX4 | CBX8 | Affinity Capture-MS | 22325352 | 9606 | 9606 | BIOGRID |
| CBX4 | SCMH1 | Affinity Capture-MS | 22325352 | 9606 | 9606 | BIOGRID |
| CBX4 | MGA | Affinity Capture-MS | 22325352 | 9606 | 9606 | BIOGRID |
| CBX4 | ZEB2 | Affinity Capture-Western | 16061479 | 9606 | 9606 | BIOGRID |
| CBX4 | ZEB2 | Biochemical Activity | 16061479 | 9606 | 9606 | BIOGRID |
| CBX4 | HNRNPK | Affinity Capture-Western | 22825850 | 9606 | 9606 | BIOGRID |
| CBX4 | ZNF131 | Affinity Capture-Western | 22467880 | 9606 | 9606 | BIOGRID |
| CBX4 | ANKRD26 | Affinity Capture-MS | 21282530 | 9606 | 9606 | BIOGRID |
| CBX4 | BMI1 | Affinity Capture-MS | 21282530 | 9606 | 9606 | BIOGRID |
| CBX4 | CBX2 | Affinity Capture-MS | 21282530 | 9606 | 9606 | BIOGRID |
| CBX4 | CENPE | Affinity Capture-MS | 21282530 | 9606 | 9606 | BIOGRID |
| CBX4 | CSNK2A1 | Affinity Capture-MS | 21282530 | 9606 | 9606 | BIOGRID |
| CBX4 | CSNK2A2 | Affinity Capture-MS | 21282530 | 9606 | 9606 | BIOGRID |
| CBX4 | CSNK2B | Affinity Capture-MS | 21282530 | 9606 | 9606 | BIOGRID |
| CBX4 | DIS3L2 | Affinity Capture-MS | 21282530 | 9606 | 9606 | BIOGRID |
| CBX4 | GTF2I | Affinity Capture-MS | 21282530 | 9606 | 9606 | BIOGRID |
| CBX4 | HIST1H2AB | Affinity Capture-MS | 21282530 | 9606 | 9606 | BIOGRID |
| CBX4 | HIST1H2BB | Affinity Capture-MS | 21282530 | 9606 | 9606 | BIOGRID |
| CBX4 | HIST4H4 | Affinity Capture-MS | 21282530 | 9606 | 9606 | BIOGRID |
| CBX4 | YWHAB | Affinity Capture-MS | 21282530 | 9606 | 9606 | BIOGRID |
| CBX4 | DCAF6 | Affinity Capture-MS | 21282530 | 9606 | 9606 | BIOGRID |
| CBX4 | KDM3A | Affinity Capture-MS | 21282530 | 9606 | 9606 | BIOGRID |
| CBX4 | TRANK1 | Affinity Capture-MS | 21282530 | 9606 | 9606 | BIOGRID |
| CBX4 | MYCBP2 | Affinity Capture-MS | 21282530 | 9606 | 9606 | BIOGRID |
| CBX4 | NPM1 | Affinity Capture-MS | 21282530 | 9606 | 9606 | BIOGRID |
| CBX4 | PARP12 | Affinity Capture-MS | 21282530 | 9606 | 9606 | BIOGRID |
| CBX4 | PARP1 | Affinity Capture-MS | 21282530 | 9606 | 9606 | BIOGRID |
| CBX4 | PHC2 | Affinity Capture-MS | 21282530 | 9606 | 9606 | BIOGRID |
| CBX4 | PSME3 | Affinity Capture-MS | 21282530 | 9606 | 9606 | BIOGRID |
| CBX4 | RNF2 | Affinity Capture-MS | 21282530 | 9606 | 9606 | BIOGRID |
| CBX4 | RNF213 | Affinity Capture-MS | 21282530 | 9606 | 9606 | BIOGRID |
| CBX4 | CCDC158 | Affinity Capture-MS | 21282530 | 9606 | 9606 | BIOGRID |
| CBX4 | ZKSCAN7 | Affinity Capture-MS | 21282530 | 9606 | 9606 | BIOGRID |
| CBX4 | PHC2 | Affinity Capture-Western | 21282530 | 9606 | 9606 | BIOGRID |
| CBX4 | CBX4 | Affinity Capture-Western | 21282530 | 9606 | 9606 | BIOGRID |
| CBX4 | YWHAE | Affinity Capture-Western | 21282530 | 9606 | 9606 | BIOGRID |
| CBX4 | YWHAZ | Affinity Capture-Western | 21282530 | 9606 | 9606 | BIOGRID |
| CBX4 | BMI1 | Affinity Capture-MS | 26496610 | 9606 | 9606 | BIOGRID |
| CBX4 | PHC1 | Affinity Capture-MS | 26496610 | 9606 | 9606 | BIOGRID |
| CBX4 | PHC2 | Affinity Capture-MS | 26496610 | 9606 | 9606 | BIOGRID |
| CBX4 | H3F3A | Affinity Capture-MS | 26496610 | 9606 | 9606 | BIOGRID |
| CBX4 | HELLS | Affinity Capture-MS | 26496610 | 9606 | 9606 | BIOGRID |
| CBX4 | MYL6 | Affinity Capture-MS | 26496610 | 9606 | 9606 | BIOGRID |
| CBX4 | RAD51 | Affinity Capture-MS | 26496610 | 9606 | 9606 | BIOGRID |
| CBX4 | RING1 | Affinity Capture-MS | 26496610 | 9606 | 9606 | BIOGRID |
| CBX4 | RNF2 | Affinity Capture-MS | 26496610 | 9606 | 9606 | BIOGRID |
| CBX4 | SDC2 | Affinity Capture-MS | 26496610 | 9606 | 9606 | BIOGRID |
| CBX4 | SLC25A1 | Affinity Capture-MS | 26496610 | 9606 | 9606 | BIOGRID |
| CBX4 | TTC1 | Affinity Capture-MS | 26496610 | 9606 | 9606 | BIOGRID |
| CBX4 | YWHAQ | Affinity Capture-MS | 26496610 | 9606 | 9606 | BIOGRID |
| CBX4 | KDM2A | Affinity Capture-MS | 26496610 | 9606 | 9606 | BIOGRID |
| CBX4 | SS18L2 | Affinity Capture-MS | 26496610 | 9606 | 9606 | BIOGRID |
| CBX4 | TMA16 | Affinity Capture-MS | 26496610 | 9606 | 9606 | BIOGRID |
| CBX4 | IMPACT | Affinity Capture-MS | 26496610 | 9606 | 9606 | BIOGRID |
| CBX4 | CBX8 | Affinity Capture-MS | 26496610 | 9606 | 9606 | BIOGRID |
| CBX4 | WIZ | Affinity Capture-MS | 26496610 | 9606 | 9606 | BIOGRID |
| CBX4 | PHC3 | Affinity Capture-MS | 26496610 | 9606 | 9606 | BIOGRID |
| CBX4 | USMG5 | Affinity Capture-MS | 26496610 | 9606 | 9606 | BIOGRID |
| CBX4 | MRPL55 | Affinity Capture-MS | 26496610 | 9606 | 9606 | BIOGRID |
| CBX4 | LAMA1 | Affinity Capture-MS | 26496610 | 9606 | 9606 | BIOGRID |
| CBX4 | YWHAH | Affinity Capture-MS | 27705803 | 9606 | 9606 | BIOGRID |
| CBX4 | YWHAG | Affinity Capture-MS | 27705803 | 9606 | 9606 | BIOGRID |
| CBX4 | YWHAQ | Affinity Capture-MS | 27705803 | 9606 | 9606 | BIOGRID |
| CBX4 | ABCD3 | Affinity Capture-MS | 27705803 | 9606 | 9606 | BIOGRID |
| CBX4 | BCOR | Affinity Capture-MS | 27705803 | 9606 | 9606 | BIOGRID |
| CBX4 | DCAF7 | Affinity Capture-MS | 27705803 | 9606 | 9606 | BIOGRID |
| CBX4 | DPM1 | Affinity Capture-MS | 27705803 | 9606 | 9606 | BIOGRID |
| CBX4 | FBRS | Affinity Capture-MS | 27705803 | 9606 | 9606 | BIOGRID |
| CBX4 | KDM2B | Affinity Capture-MS | 27705803 | 9606 | 9606 | BIOGRID |
| CBX4 | PCGF1 | Affinity Capture-MS | 27705803 | 9606 | 9606 | BIOGRID |
| CBX4 | PCGF2 | Affinity Capture-MS | 27705803 | 9606 | 9606 | BIOGRID |
| CBX4 | PCGF3 | Affinity Capture-MS | 27705803 | 9606 | 9606 | BIOGRID |
| CBX4 | COMMD3-BMI1 | Affinity Capture-MS | 27705803 | 9606 | 9606 | BIOGRID |
| CBX4 | BMI1 | Affinity Capture-MS | 27705803 | 9606 | 9606 | BIOGRID |
| CBX4 | PCGF5 | Affinity Capture-MS | 27705803 | 9606 | 9606 | BIOGRID |
| CBX4 | PCGF6 | Affinity Capture-MS | 27705803 | 9606 | 9606 | BIOGRID |
| CBX4 | PHC1 | Affinity Capture-MS | 27705803 | 9606 | 9606 | BIOGRID |
| CBX4 | PHC2 | Affinity Capture-MS | 27705803 | 9606 | 9606 | BIOGRID |
| CBX4 | PHC3 | Affinity Capture-MS | 27705803 | 9606 | 9606 | BIOGRID |
| CBX4 | RING1 | Affinity Capture-MS | 27705803 | 9606 | 9606 | BIOGRID |
| CBX4 | RNF2 | Affinity Capture-MS | 27705803 | 9606 | 9606 | BIOGRID |
| CBX4 | RPS3 | Affinity Capture-MS | 27705803 | 9606 | 9606 | BIOGRID |
| CBX4 | SCML1 | Affinity Capture-MS | 27705803 | 9606 | 9606 | BIOGRID |
| CBX4 | SKP1 | Affinity Capture-MS | 27705803 | 9606 | 9606 | BIOGRID |
| CBX4 | TUBA1C | Affinity Capture-MS | 27705803 | 9606 | 9606 | BIOGRID |
| CBX4 | RING1 | Affinity Capture-Western | 30317550 | 9606 | 9606 | BIOGRID |
| CBX4 | RB1 | Affinity Capture-Western | 30317550 | 9606 | 9606 | BIOGRID |
| CBX4 | ARID3C | Two-hybrid | 32296183 | 9606 | 9606 | BIOGRID |
| CBX4 | CHD3 | Biochemical Activity | 27068747 | 9606 | 9606 | BIOGRID |
| CBX4 | WDR82 | Affinity Capture-MS | 24981860 | 9606 | 9606 | BIOGRID |
| CBX4 | RPL23A | Affinity Capture-MS | 24981860 | 9606 | 9606 | BIOGRID |
| CBX4 | TOX4 | Affinity Capture-MS | 24981860 | 9606 | 9606 | BIOGRID |
| CBX4 | PHC3 | Affinity Capture-MS | 24981860 | 9606 | 9606 | BIOGRID |
Annotation of CBX4
TCGA cancer survival map of CBX4
Expression of CBX4
Disease information of CBX4