TcoF overview
| TcoF: | KDM4C | |
| GeneID: | 3965 | |
| Name: | Lysine-specific demethylase 4C | |
| Ensembl: | ENSG00000107077 | |
| Species: | Human | |
| Class: | class HC | |
| Family: | Lysine demethylase | |
| Disease: | 7 | |
| Go term: | 23 | |
| Pathway: | 4 | |
| Hallmark: | -- | |
| Super Enhancer: |
chr9:6639660-6682908 chr9:6639611-6686694 chr9:6703132-6717002 chr9:6636781-6686856 chr9:6702876-6718174 chr9:6627854-6686857 chr9:6636731-6686841 chr9:6749854-6759809 chr9:6750005-6760048 chr9:6757033-6788877 chr9:6756893-6777906 chr9:6749683-6760105 chr9:6749871-6759875 chr9:6756421-6759802 chr9:6750332-6759801 chr9:6679993-6724494 chr9:6749658-6817341 chr9:6764442-6778127 chr9:6895833-6906782 chr9:6749652-6759846 chr9:6877491-6909776 chr9:6757010-6778154 chr9:6756753-6789201 chr9:6756699-6809170 chr9:6756661-6789280 chr9:6756597-6778870 chr9:6756784-6791394 chr9:6756612-6780742 chr9:6756550-6798056 chr9:6756740-6788855 chr9:6756704-6789430 chr9:6756232-6820811 chr9:6910023-6957694 chr9:6756284-6760264 chr9:6756284-6760264 chr9:6756568-6760111 chr9:7112381-7155363 chr9:7112797-7177227 chr9:6680346-6717075 chr9:6680098-6704968 chr9:6680405-6704918 chr9:6680447-6693741 chr9:6680346-6693812 chr9:6680295-6716975 chr9:6680280-6693949 chr9:6680255-6704629 chr9:6680106-6717216 chr9:6680322-6716701 chr9:6680343-6705010 chr9:7236730-7241774 chr9:6680306-6716944 chr9:6679892-6716716 chr9:6679986-6704227 chr9:6680284-6716840 chr9:6680066-6704889 chr9:6680190-6705004 chr9:6680628-6716699 chr9:6680662-6693261 |
|
| Enhancer: |
chr9:6605280-6606590 chr9:6758200-6760660 chr9:6592990-6595010 chr9:6644690-6645240 chr9:6683160-6683940 chr9:6620320-6622420 chr9:6604780-6605130 chr9:6632470-6633690 chr9:6688940-6691180 chr9:6691650-6694000 chr9:6721860-6724300 chr9:6776110-6778490 chr9:6778690-6781020 chr9:6893230-6895720 chr9:6749670-6752020 chr9:6068090-6070100 chr9:6078960-6081340 chr9:6133300-6134990 chr9:6184640-6185240 chr9:6394830-6396300 chr9:6413640-6416070 chr9:6417080-6419440 chr9:6574560-6576900 chr9:6625090-6626460 chr9:6627420-6629650 chr9:6630800-6631400 chr9:6673080-6674170 chr9:6763760-6766080 chr9:6771340-6772680 chr9:6774560-6775540 chr9:6916980-6919190 chr9:6355200-6357620 chr9:6618990-6620180 chr9:6556820-6558550 chr9:6930830-6933110 chr9:6937960-6939400 chr9:6954200-6956310 chr9:6956600-6957420 chr9:6810950-6811990 chr9:6829020-6829520 chr9:6943360-6945580 chr9:6538280-6539120 chr9:6448980-6450030 chr9:6590680-6591550 chr9:6591610-6592140 chr9:6592220-6592850 chr9:6868930-6870000 chr9:6870570-6871090 chr9:6875850-6878260 chr9:6984770-6985860 chr9:7102790-7103680 chr9:7129260-7131430 chr9:7146550-7148740 chr9:7170960-7173290 chr9:6566330-6567650 chr9:6781430-6782090 chr9:6782350-6784310 |
|
| Promoter: |
chr9:6720863-7175648 |
ChIP-seq based regulatory details of KDM4C
| Sample ID | Experiment target | Biosample type | Biosample term name | GSM ID | Tissue type | Source |
|---|---|---|---|---|---|---|
| TcoF_00_20781 | KDM4C | cell line | KYSE-150 | GSM1303751 | Esophagus | Cistrome |
| TcoF_00_40801 | KDM4C | cell line | KYSE150 | GSM1303751 | Esophagus | ReMap |
| TcoF_00_20782 | KDM4C | cell line | KYSE-150 | GSM1303752 | Esophagus | Cistrome |
| TcoF_00_21233 | KDM4C | cell line | OECM1 | GSM1626090 | Head and neck | Cistrome |
| TcoF_00_21234 | KDM4C | cell line | OECM1 | GSM1626091 | Head and neck | Cistrome |
Downstream target genes of KDM4C
Upstream regulatory details of KDM4C
Protein-protein interaction of KDM4C
| OFFICIAL_SYMBOL_A | OFFICIAL_SYMBOL_B | EXPERIMENTAL_SYSTEM | PUBMED_ID | ORGANISM_A_ID | ORGANISM_B_ID | SOURCE |
|---|---|---|---|---|---|---|
| KDM4C | KDM4A | Affinity Capture-Western | 17207460 | 9606 | 9606 | BIOGRID |
| KDM4C | KDM4C | Affinity Capture-Western | 17207460 | 9606 | 9606 | BIOGRID |
| KDM4C | HIST1H3A | Biochemical Activity | 16732293 | 9606 | 9606 | BIOGRID |
| KDM4C | HDAC1 | Affinity Capture-Western | 21637537 | 9606 | 9606 | BIOGRID |
| KDM4C | HDAC3 | Affinity Capture-Western | 21637537 | 9606 | 9606 | BIOGRID |
| KDM4C | HIST2H3C | Biochemical Activity | 21575637 | 9606 | 9606 | BIOGRID |
| KDM4C | HIF1A | Reconstituted Complex | 23129632 | 9606 | 9606 | BIOGRID |
| KDM4C | HIF1A | Affinity Capture-Western | 23129632 | 9606 | 9606 | BIOGRID |
| KDM4C | PRMT5 | Negative Genetic | 26864203 | 9606 | 9606 | BIOGRID |
| KDM4C | NME2 | Affinity Capture-MS | 24981860 | 9606 | 9606 | BIOGRID |
| KDM4C | EEF1B2 | Affinity Capture-MS | 24981860 | 9606 | 9606 | BIOGRID |
| KDM4C | AHCY | Affinity Capture-MS | 24981860 | 9606 | 9606 | BIOGRID |
| KDM4C | EIF6 | Affinity Capture-MS | 24981860 | 9606 | 9606 | BIOGRID |
| KDM4C | RPL30 | Affinity Capture-MS | 24981860 | 9606 | 9606 | BIOGRID |
| KDM4C | SF3A1 | Affinity Capture-MS | 24981860 | 9606 | 9606 | BIOGRID |
| KDM4C | RCC1 | Affinity Capture-MS | 24981860 | 9606 | 9606 | BIOGRID |
| KDM4C | PNP | Affinity Capture-MS | 24981860 | 9606 | 9606 | BIOGRID |
| KDM4C | FHL1 | Affinity Capture-MS | 24981860 | 9606 | 9606 | BIOGRID |
| KDM4C | ACO2 | Affinity Capture-MS | 24981860 | 9606 | 9606 | BIOGRID |
| KDM4C | ALDH18A1 | Affinity Capture-MS | 24981860 | 9606 | 9606 | BIOGRID |
| KDM4C | SMCHD1 | Affinity Capture-MS | 24981860 | 9606 | 9606 | BIOGRID |
| KDM4C | MTAP | Affinity Capture-MS | 24981860 | 9606 | 9606 | BIOGRID |
| KDM4C | HOMER1 | Affinity Capture-MS | 24981860 | 9606 | 9606 | BIOGRID |
| KDM4C | CA2 | Affinity Capture-MS | 24981860 | 9606 | 9606 | BIOGRID |
| KDM4C | CANX | Affinity Capture-MS | 24981860 | 9606 | 9606 | BIOGRID |
| KDM4C | DLST | Affinity Capture-MS | 24981860 | 9606 | 9606 | BIOGRID |
| KDM4C | EPB41L3 | Affinity Capture-MS | 24981860 | 9606 | 9606 | BIOGRID |
| KDM4C | ACTN4 | Affinity Capture-MS | 24981860 | 9606 | 9606 | BIOGRID |
| KDM4C | EPB41 | Affinity Capture-MS | 24981860 | 9606 | 9606 | BIOGRID |
| KDM4C | RIF1 | Affinity Capture-MS | 24981860 | 9606 | 9606 | BIOGRID |
| KDM4C | CSTA | Affinity Capture-MS | 24981860 | 9606 | 9606 | BIOGRID |
Annotation of KDM4C
TCGA cancer survival map of KDM4C
Expression of KDM4C
Disease information of KDM4C