TcoF overview
TcoF: PAF1
GeneID: 22976
Name: RNA polymerase II-associated factor 1 homolog
Ensembl: ENSG00000006712
Species: Human
Class: class HC
Family: Others
Disease: 0
Go term: 25
Pathway: 1
Hallmark: --
Super Enhancer:

chr19:39850842-39864380 chr19:39852256-39866540 chr19:39852297-39864933 chr19:39879068-39883452 chr19:39880186-39882528

--
Enhancer:

chr19:39926350-39926480 chr19:39125760-39127520 chr19:39212330-39214250 chr19:39216540-39217590 chr19:39218670-39219630 chr19:39224420-39224780 chr19:39224840-39224950 chr19:39225030-39225450 chr19:39225510-39226000 chr19:39226070-39226140 chr19:39226180-39226740 chr19:39226960-39227190 chr19:39227200-39227790 chr19:39259660-39261600 chr19:39321810-39321940 chr19:39322160-39322360 chr19:39328120-39328230 chr19:39328290-39329030 chr19:39329660-39330730 chr19:39338080-39340340 chr19:39397060-39397860 chr19:39397950-39398030 chr19:39399970-39401200 chr19:39401720-39402200 chr19:39402290-39402450 chr19:39402490-39402730 chr19:39407800-39408360 chr19:39408470-39408560 chr19:39408650-39408730 chr19:39408770-39409060 chr19:39409170-39409400 chr19:39409450-39410400 chr19:39410510-39410720 chr19:39519700-39521660 chr19:39521760-39521840 chr19:39521960-39522500 chr19:39886840-39888090 chr19:39891200-39892480 chr19:39897570-39898380 chr19:39905320-39905630 chr19:39909640-39910520 chr19:39924400-39926240 chr19:39961160-39961990 chr19:39971600-39972520 chr19:39996090-39997670 chr19:39998260-39998460 chr19:40131550-40132790 chr19:40364770-40366020 chr19:40420480-40421090 chr19:40421700-40423760 chr19:40432140-40432960 chr19:40477150-40478050 chr19:40487670-40488790 chr19:40503060-40503760 chr19:40512090-40513180 chr19:40519210-40519570 chr19:40528810-40531060 chr19:39123320-39125630 chr19:39221860-39224340 chr19:39944160-39945780 chr19:39960040-39960750 chr19:40434210-40436250 chr19:39748440-39750320 chr19:39990110-39990230 chr19:39334740-39336280 chr19:39823760-39825900 chr19:39825950-39826070 chr19:39435740-39437110 chr19:39992970-39993450 chr19:39360050-39360210 chr19:39360340-39360580 chr19:39360900-39361200 chr19:39367420-39368870 chr19:39531360-39533440 chr19:39840930-39842450 chr19:39821350-39823710 chr19:39602130-39604460 chr19:39656270-39656910 chr19:39833220-39835380 chr19:39906080-39906980 chr19:39993700-39994710 chr19:39862090-39864480 chr19:39924060-39924160 chr19:39924200-39924300 chr19:39820270-39820420 chr19:39826170-39826610 chr19:40006660-40007830 chr19:40196650-40197230 chr19:40198030-40199830 chr19:39965040-39965150 chr19:40170080-40172070 chr19:40195180-40196340 chr19:40503820-40504150 chr19:39964760-39964870 chr19:40308560-40310740 chr19:39727690-39729680 chr19:39939630-39940360 chr19:39528200-39529440 chr19:39869980-39870600 chr19:39905900-39905970 chr19:39819190-39819270 chr19:39989680-39989830 chr19:39875540-39876260 chr19:39972670-39973090 chr19:39327500-39328020 chr19:39329240-39329530 chr19:39440980-39443210 chr19:39868460-39869140 chr19:39464280-39466220 chr19:39650220-39652640 chr19:39660450-39661840 chr19:39852890-39855180 chr19:39319460-39321710 chr19:39461210-39462900 chr19:39843020-39844640 chr19:39281530-39282210 chr19:39289440-39290980 chr19:39482920-39484810 chr19:39561080-39562240 chr19:39575040-39575730 chr19:39656980-39658860 chr19:39658950-39659260 chr19:39688890-39689800 chr19:39689910-39690980 chr19:39221520-39221600 chr19:39221660-39221740 chr19:39228030-39228110 chr19:39228280-39228780 chr19:39229290-39230690 chr19:39230860-39231210 chr19:39246870-39249260 chr19:39249740-39250980 chr19:39253150-39255390 chr19:39295880-39296500 chr19:39297240-39297400 chr19:39297500-39299190 chr19:39299300-39299380 chr19:39299590-39299790 chr19:39301610-39303070 chr19:39303160-39303480 chr19:39309340-39311780 chr19:39314240-39315770 chr19:39334560-39334640 chr19:39336380-39336490 chr19:39336730-39337950 chr19:39354830-39357110 chr19:39359810-39359880 chr19:39485980-39487240 chr19:39536200-39537740 chr19:39620310-39622800 chr19:39623070-39625180 chr19:39637200-39638390 chr19:39640380-39641290 chr19:39641420-39642200 chr19:39642770-39643680 chr19:39644750-39646220 chr19:39649570-39650050 chr19:39659480-39660170 chr19:40009620-40009710 chr19:40009810-40010780 chr19:40449450-40450900 chr19:39907060-39907190 chr19:39907230-39907480 chr19:40146620-40148520 chr19:39692520-39692800 chr19:39871750-39873840 chr19:39860770-39860910 chr19:39440100-39440610 chr19:39522890-39523140 chr19:39554790-39555770 chr19:39792360-39794780 chr19:39912930-39913370 chr19:40200090-40201800 chr19:39688760-39688840 chr19:39962370-39963040 chr19:39282400-39284740 chr19:39291750-39292310 chr19:39788750-39788850 chr19:39788940-39789030 chr19:39790020-39790570 chr19:40047910-40050340

--
Promoter:

chr19:39876269-39881794

False
 ChIP-seq based regulatory details of PAF1
select * from encode where Experiment_target='PAF1'
Sample ID Experiment target Biosample type Biosample term name GSM ID Tissue type Source
TcoF_00_10056 PAF1 cell line HepG2 - Liver ENCODE
TcoF_00_30336 PAF1 cell line THP-1 GSM1520907 Blood ChIP-Atlas
TcoF_00_30335 PAF1 cell line THP-1 GSM1520916 Blood ChIP-Atlas
TcoF_00_30342 PAF1 cell line THP-1 GSM1520917 Blood ChIP-Atlas
TcoF_00_30047 PAF1 cell line CCRF-CEM GSM1520926 Blood ChIP-Atlas
TcoF_00_30048 PAF1 cell line CCRF-CEM GSM1520927 Blood ChIP-Atlas
TcoF_00_20824 PAF1 cell line LNCaP-abl GSM1679114 Prostate Cistrome
TcoF_00_20369 PAF1 cell line HCT-116 GSM1727094 Colon Cistrome
TcoF_00_20370 PAF1 cell line HCT-116 GSM1727095 Colon Cistrome
TcoF_00_20371 PAF1 cell line HCT-116 GSM1727096 Colon Cistrome
TcoF_00_20372 PAF1 cell line HCT-116 GSM1727097 Colon Cistrome
TcoF_00_20373 PAF1 cell line HCT-116 GSM1727098 Colon Cistrome
TcoF_00_20374 PAF1 cell line HCT-116 GSM1727099 Colon Cistrome
TcoF_00_20375 PAF1 cell line HCT-116 GSM1727106 Colon Cistrome
TcoF_00_20921 PAF1 cell line MCF-7 GSM1727112 Breast Cistrome
TcoF_00_21281 PAF1 cell line SEM GSM2212243 Blood Cistrome
TcoF_00_40336 PAF1 cell line HCT-116_37c GSM2571030 Colon ReMap
TcoF_00_20404 PAF1 cell line HCT-116 GSM2571033 Colon Cistrome
TcoF_00_20403 PAF1 cell line HCT-116 GSM2571034 Colon Cistrome
TcoF_00_20402 PAF1 cell line HCT-116 GSM2571035 Colon Cistrome
TcoF_00_40337 PAF1 cell line HCT-116_ab20662 GSM2571060 Colon ReMap
TcoF_00_40338 PAF1 cell line HCT-116_ab-sc-74797 GSM2571062 Colon ReMap
TcoF_00_20389 PAF1 cell line HCT-116 GSM2769055 Colon Cistrome
TcoF_00_20229 PAF1 cell line DLD-1 GSM2769056 None Cistrome
TcoF_00_20230 PAF1 cell line DLD-1 GSM2769057 None Cistrome
TcoF_00_20228 PAF1 cell line DLD-1 GSM2769058 None Cistrome
TcoF_00_20128 PAF1 cell line A549 GSM874635 Lung Cistrome
TcoF_00_20127 PAF1 cell line A549 GSM874636 Lung Cistrome
TcoF_00_20126 PAF1 cell line A549 GSM874640 Lung Cistrome
 Downstream target genes of PAF1
 Protein-protein interaction of PAF1
OFFICIAL_SYMBOL_A OFFICIAL_SYMBOL_B EXPERIMENTAL_SYSTEM PUBMED_ID ORGANISM_A_ID ORGANISM_B_ID SOURCE
PAF1 CTR9 Affinity Capture-Western 18469135 9606 9606 BIOGRID
PAF1 LEO1 Affinity Capture-Western 18469135 9606 9606 BIOGRID
PAF1 CDC73 Affinity Capture-Western 18469135 9606 9606 BIOGRID
PAF1 RTF1 Affinity Capture-Western 18469135 9606 9606 BIOGRID
PAF1 LEO1 Affinity Capture-MS 18469135 9606 9606 BIOGRID
PAF1 CTR9 Affinity Capture-MS 18469135 9606 9606 BIOGRID
PAF1 RTF1 Affinity Capture-MS 18469135 9606 9606 BIOGRID
PAF1 CDC73 Affinity Capture-MS 18469135 9606 9606 BIOGRID
PAF1 POLR2A Affinity Capture-Western 16491129 9606 9606 BIOGRID
PAF1 SUPT16H Affinity Capture-Western 16713563 9606 9606 BIOGRID
PAF1 TTC37 Affinity Capture-Western 16024656 9606 9606 BIOGRID
PAF1 CDC73 Affinity Capture-Western 20178742 9606 9606 BIOGRID
PAF1 RTF1 Affinity Capture-Western 20178742 9606 9606 BIOGRID
PAF1 WDR61 Affinity Capture-Western 20178742 9606 9606 BIOGRID
PAF1 CTR9 Affinity Capture-Western 20178742 9606 9606 BIOGRID
PAF1 LEO1 Affinity Capture-Western 20178742 9606 9606 BIOGRID
PAF1 POLR2A Reconstituted Complex 20178742 9606 9606 BIOGRID
PAF1 CHD1 Affinity Capture-Western 22046413 9606 9606 BIOGRID
PAF1 CDC73 Affinity Capture-MS 20305087 9606 9606 BIOGRID
PAF1 CTR9 Affinity Capture-MS 20305087 9606 9606 BIOGRID
PAF1 LEO1 Affinity Capture-MS 20305087 9606 9606 BIOGRID
PAF1 WDR61 Affinity Capture-MS 20305087 9606 9606 BIOGRID
PAF1 HIST1H3A Reconstituted Complex 22451921 9606 9606 BIOGRID
PAF1 CDC73 Affinity Capture-Western 21726809 9606 9606 BIOGRID
PAF1 CTR9 Affinity Capture-Western 21726809 9606 9606 BIOGRID
PAF1 LEO1 Affinity Capture-Western 21726809 9606 9606 BIOGRID
PAF1 UBE2E1 Affinity Capture-Western 16307923 9606 9606 BIOGRID
PAF1 RNF20 Affinity Capture-Western 16307923 9606 9606 BIOGRID
PAF1 RTF1 Co-fractionation 22939629 9606 9606 BIOGRID
PAF1 SUPT16H Co-fractionation 22939629 9606 9606 BIOGRID
PAF1 SSRP1 Co-fractionation 22939629 9606 9606 BIOGRID
PAF1 ZC3H4 Co-fractionation 22939629 9606 9606 BIOGRID
PAF1 DNMT3A Affinity Capture-Western 21406692 9606 9606 BIOGRID
PAF1 DNMT3B Affinity Capture-Western 21406692 9606 9606 BIOGRID
PAF1 POLR2A Affinity Capture-Western 24360965 9606 9606 BIOGRID
PAF1 MSL1 Co-fractionation 24837678 9606 9606 BIOGRID
PAF1 RNF40 Co-fractionation 24837678 9606 9606 BIOGRID
PAF1 RNF20 Co-fractionation 24837678 9606 9606 BIOGRID
PAF1 MSL2 Co-fractionation 24837678 9606 9606 BIOGRID
PAF1 MSL1 Reconstituted Complex 24837678 9606 9606 BIOGRID
PAF1 MSL2 Reconstituted Complex 24837678 9606 9606 BIOGRID
PAF1 RNF20 Reconstituted Complex 24837678 9606 9606 BIOGRID
PAF1 POLR2A Co-fractionation 24837678 9606 9606 BIOGRID
PAF1 LEO1 Two-hybrid 25416956 9606 9606 BIOGRID
PAF1 CDK9 Co-fractionation 24837678 9606 9606 BIOGRID
PAF1 CDC7 Co-fractionation 26344197 9606 9606 BIOGRID
PAF1 CDC73 Co-fractionation 26344197 9606 9606 BIOGRID
PAF1 CHD1 Co-fractionation 26344197 9606 9606 BIOGRID
PAF1 CHD2 Co-fractionation 26344197 9606 9606 BIOGRID
PAF1 CTR9 Co-fractionation 26344197 9606 9606 BIOGRID
PAF1 RTF1 Co-fractionation 26344197 9606 9606 BIOGRID
PAF1 SRRM1 Co-fractionation 26344197 9606 9606 BIOGRID
PAF1 SUPT16H Co-fractionation 26344197 9606 9606 BIOGRID
PAF1 WDR61 Co-fractionation 26344197 9606 9606 BIOGRID
PAF1 FXR2 Two-hybrid 21516116 9606 9606 BIOGRID
PAF1 CTR9 Affinity Capture-Western 30228257 9606 9606 BIOGRID
PAF1 SMARCD3 Negative Genetic 28481362 9606 9606 BIOGRID
PAF1 PHC3 Negative Genetic 28481362 9606 9606 BIOGRID
PAF1 PHC1 Negative Genetic 28481362 9606 9606 BIOGRID
PAF1 RTF1 Positive Genetic 28481362 9606 9606 BIOGRID
PAF1 TRRAP Positive Genetic 28481362 9606 9606 BIOGRID
PAF1 THOC2 Positive Genetic 28481362 9606 9606 BIOGRID
PAF1 RUVBL1 Positive Genetic 28481362 9606 9606 BIOGRID
PAF1 LEO1 Two-hybrid 32296183 9606 9606 BIOGRID
PAF1 PC Affinity Capture-MS 24981860 9606 9606 BIOGRID
PAF1 COX7A2 Affinity Capture-MS 24981860 9606 9606 BIOGRID
PAF1 MCCC2 Affinity Capture-MS 24981860 9606 9606 BIOGRID
 Annotation of PAF1
 TCGA cancer survival map of PAF1


Calculate the hazards ratio based on Cox PH Model.
Add the 95% CI as dotted line.
Reset Add The plot axis-x order will follow the list.


Calculate the hazards ratio based on Cox PH Model.
We use log2(TPM + 1) for log-scale.
All Add
Reset The plot is based on the datasets of list.


 Disease information of  PAF1