TcoF overview
| TcoF: | PAF1 | |
| GeneID: | 22976 | |
| Name: | RNA polymerase II-associated factor 1 homolog | |
| Ensembl: | ENSG00000006712 | |
| Species: | Human | |
| Class: | class HC | |
| Family: | Others | |
| Disease: | 0 | |
| Go term: | 25 | |
| Pathway: | 1 | |
| Hallmark: | -- | |
| Super Enhancer: |
chr19:39850842-39864380 chr19:39852256-39866540 chr19:39852297-39864933 chr19:39879068-39883452 chr19:39880186-39882528 |
|
| Enhancer: |
chr19:39926350-39926480 chr19:39125760-39127520 chr19:39212330-39214250 chr19:39216540-39217590 chr19:39218670-39219630 chr19:39224420-39224780 chr19:39224840-39224950 chr19:39225030-39225450 chr19:39225510-39226000 chr19:39226070-39226140 chr19:39226180-39226740 chr19:39226960-39227190 chr19:39227200-39227790 chr19:39259660-39261600 chr19:39321810-39321940 chr19:39322160-39322360 chr19:39328120-39328230 chr19:39328290-39329030 chr19:39329660-39330730 chr19:39338080-39340340 chr19:39397060-39397860 chr19:39397950-39398030 chr19:39399970-39401200 chr19:39401720-39402200 chr19:39402290-39402450 chr19:39402490-39402730 chr19:39407800-39408360 chr19:39408470-39408560 chr19:39408650-39408730 chr19:39408770-39409060 chr19:39409170-39409400 chr19:39409450-39410400 chr19:39410510-39410720 chr19:39519700-39521660 chr19:39521760-39521840 chr19:39521960-39522500 chr19:39886840-39888090 chr19:39891200-39892480 chr19:39897570-39898380 chr19:39905320-39905630 chr19:39909640-39910520 chr19:39924400-39926240 chr19:39961160-39961990 chr19:39971600-39972520 chr19:39996090-39997670 chr19:39998260-39998460 chr19:40131550-40132790 chr19:40364770-40366020 chr19:40420480-40421090 chr19:40421700-40423760 chr19:40432140-40432960 chr19:40477150-40478050 chr19:40487670-40488790 chr19:40503060-40503760 chr19:40512090-40513180 chr19:40519210-40519570 chr19:40528810-40531060 chr19:39123320-39125630 chr19:39221860-39224340 chr19:39944160-39945780 chr19:39960040-39960750 chr19:40434210-40436250 chr19:39748440-39750320 chr19:39990110-39990230 chr19:39334740-39336280 chr19:39823760-39825900 chr19:39825950-39826070 chr19:39435740-39437110 chr19:39992970-39993450 chr19:39360050-39360210 chr19:39360340-39360580 chr19:39360900-39361200 chr19:39367420-39368870 chr19:39531360-39533440 chr19:39840930-39842450 chr19:39821350-39823710 chr19:39602130-39604460 chr19:39656270-39656910 chr19:39833220-39835380 chr19:39906080-39906980 chr19:39993700-39994710 chr19:39862090-39864480 chr19:39924060-39924160 chr19:39924200-39924300 chr19:39820270-39820420 chr19:39826170-39826610 chr19:40006660-40007830 chr19:40196650-40197230 chr19:40198030-40199830 chr19:39965040-39965150 chr19:40170080-40172070 chr19:40195180-40196340 chr19:40503820-40504150 chr19:39964760-39964870 chr19:40308560-40310740 chr19:39727690-39729680 chr19:39939630-39940360 chr19:39528200-39529440 chr19:39869980-39870600 chr19:39905900-39905970 chr19:39819190-39819270 chr19:39989680-39989830 chr19:39875540-39876260 chr19:39972670-39973090 chr19:39327500-39328020 chr19:39329240-39329530 chr19:39440980-39443210 chr19:39868460-39869140 chr19:39464280-39466220 chr19:39650220-39652640 chr19:39660450-39661840 chr19:39852890-39855180 chr19:39319460-39321710 chr19:39461210-39462900 chr19:39843020-39844640 chr19:39281530-39282210 chr19:39289440-39290980 chr19:39482920-39484810 chr19:39561080-39562240 chr19:39575040-39575730 chr19:39656980-39658860 chr19:39658950-39659260 chr19:39688890-39689800 chr19:39689910-39690980 chr19:39221520-39221600 chr19:39221660-39221740 chr19:39228030-39228110 chr19:39228280-39228780 chr19:39229290-39230690 chr19:39230860-39231210 chr19:39246870-39249260 chr19:39249740-39250980 chr19:39253150-39255390 chr19:39295880-39296500 chr19:39297240-39297400 chr19:39297500-39299190 chr19:39299300-39299380 chr19:39299590-39299790 chr19:39301610-39303070 chr19:39303160-39303480 chr19:39309340-39311780 chr19:39314240-39315770 chr19:39334560-39334640 chr19:39336380-39336490 chr19:39336730-39337950 chr19:39354830-39357110 chr19:39359810-39359880 chr19:39485980-39487240 chr19:39536200-39537740 chr19:39620310-39622800 chr19:39623070-39625180 chr19:39637200-39638390 chr19:39640380-39641290 chr19:39641420-39642200 chr19:39642770-39643680 chr19:39644750-39646220 chr19:39649570-39650050 chr19:39659480-39660170 chr19:40009620-40009710 chr19:40009810-40010780 chr19:40449450-40450900 chr19:39907060-39907190 chr19:39907230-39907480 chr19:40146620-40148520 chr19:39692520-39692800 chr19:39871750-39873840 chr19:39860770-39860910 chr19:39440100-39440610 chr19:39522890-39523140 chr19:39554790-39555770 chr19:39792360-39794780 chr19:39912930-39913370 chr19:40200090-40201800 chr19:39688760-39688840 chr19:39962370-39963040 chr19:39282400-39284740 chr19:39291750-39292310 chr19:39788750-39788850 chr19:39788940-39789030 chr19:39790020-39790570 chr19:40047910-40050340 |
|
| Promoter: |
chr19:39876269-39881794 |
ChIP-seq based regulatory details of PAF1
| Sample ID | Experiment target | Biosample type | Biosample term name | GSM ID | Tissue type | Source |
|---|---|---|---|---|---|---|
| TcoF_00_10056 | PAF1 | cell line | HepG2 | - | Liver | ENCODE |
| TcoF_00_30336 | PAF1 | cell line | THP-1 | GSM1520907 | Blood | ChIP-Atlas |
| TcoF_00_30335 | PAF1 | cell line | THP-1 | GSM1520916 | Blood | ChIP-Atlas |
| TcoF_00_30342 | PAF1 | cell line | THP-1 | GSM1520917 | Blood | ChIP-Atlas |
| TcoF_00_30047 | PAF1 | cell line | CCRF-CEM | GSM1520926 | Blood | ChIP-Atlas |
| TcoF_00_30048 | PAF1 | cell line | CCRF-CEM | GSM1520927 | Blood | ChIP-Atlas |
| TcoF_00_20824 | PAF1 | cell line | LNCaP-abl | GSM1679114 | Prostate | Cistrome |
| TcoF_00_20369 | PAF1 | cell line | HCT-116 | GSM1727094 | Colon | Cistrome |
| TcoF_00_20370 | PAF1 | cell line | HCT-116 | GSM1727095 | Colon | Cistrome |
| TcoF_00_20371 | PAF1 | cell line | HCT-116 | GSM1727096 | Colon | Cistrome |
| TcoF_00_20372 | PAF1 | cell line | HCT-116 | GSM1727097 | Colon | Cistrome |
| TcoF_00_20373 | PAF1 | cell line | HCT-116 | GSM1727098 | Colon | Cistrome |
| TcoF_00_20374 | PAF1 | cell line | HCT-116 | GSM1727099 | Colon | Cistrome |
| TcoF_00_20375 | PAF1 | cell line | HCT-116 | GSM1727106 | Colon | Cistrome |
| TcoF_00_20921 | PAF1 | cell line | MCF-7 | GSM1727112 | Breast | Cistrome |
| TcoF_00_21281 | PAF1 | cell line | SEM | GSM2212243 | Blood | Cistrome |
| TcoF_00_40336 | PAF1 | cell line | HCT-116_37c | GSM2571030 | Colon | ReMap |
| TcoF_00_20404 | PAF1 | cell line | HCT-116 | GSM2571033 | Colon | Cistrome |
| TcoF_00_20403 | PAF1 | cell line | HCT-116 | GSM2571034 | Colon | Cistrome |
| TcoF_00_20402 | PAF1 | cell line | HCT-116 | GSM2571035 | Colon | Cistrome |
| TcoF_00_40337 | PAF1 | cell line | HCT-116_ab20662 | GSM2571060 | Colon | ReMap |
| TcoF_00_40338 | PAF1 | cell line | HCT-116_ab-sc-74797 | GSM2571062 | Colon | ReMap |
| TcoF_00_20389 | PAF1 | cell line | HCT-116 | GSM2769055 | Colon | Cistrome |
| TcoF_00_20229 | PAF1 | cell line | DLD-1 | GSM2769056 | None | Cistrome |
| TcoF_00_20230 | PAF1 | cell line | DLD-1 | GSM2769057 | None | Cistrome |
| TcoF_00_20228 | PAF1 | cell line | DLD-1 | GSM2769058 | None | Cistrome |
| TcoF_00_20128 | PAF1 | cell line | A549 | GSM874635 | Lung | Cistrome |
| TcoF_00_20127 | PAF1 | cell line | A549 | GSM874636 | Lung | Cistrome |
| TcoF_00_20126 | PAF1 | cell line | A549 | GSM874640 | Lung | Cistrome |
Downstream target genes of PAF1
Upstream regulatory details of PAF1
Protein-protein interaction of PAF1
| OFFICIAL_SYMBOL_A | OFFICIAL_SYMBOL_B | EXPERIMENTAL_SYSTEM | PUBMED_ID | ORGANISM_A_ID | ORGANISM_B_ID | SOURCE |
|---|---|---|---|---|---|---|
| PAF1 | CTR9 | Affinity Capture-Western | 18469135 | 9606 | 9606 | BIOGRID |
| PAF1 | LEO1 | Affinity Capture-Western | 18469135 | 9606 | 9606 | BIOGRID |
| PAF1 | CDC73 | Affinity Capture-Western | 18469135 | 9606 | 9606 | BIOGRID |
| PAF1 | RTF1 | Affinity Capture-Western | 18469135 | 9606 | 9606 | BIOGRID |
| PAF1 | LEO1 | Affinity Capture-MS | 18469135 | 9606 | 9606 | BIOGRID |
| PAF1 | CTR9 | Affinity Capture-MS | 18469135 | 9606 | 9606 | BIOGRID |
| PAF1 | RTF1 | Affinity Capture-MS | 18469135 | 9606 | 9606 | BIOGRID |
| PAF1 | CDC73 | Affinity Capture-MS | 18469135 | 9606 | 9606 | BIOGRID |
| PAF1 | POLR2A | Affinity Capture-Western | 16491129 | 9606 | 9606 | BIOGRID |
| PAF1 | SUPT16H | Affinity Capture-Western | 16713563 | 9606 | 9606 | BIOGRID |
| PAF1 | TTC37 | Affinity Capture-Western | 16024656 | 9606 | 9606 | BIOGRID |
| PAF1 | CDC73 | Affinity Capture-Western | 20178742 | 9606 | 9606 | BIOGRID |
| PAF1 | RTF1 | Affinity Capture-Western | 20178742 | 9606 | 9606 | BIOGRID |
| PAF1 | WDR61 | Affinity Capture-Western | 20178742 | 9606 | 9606 | BIOGRID |
| PAF1 | CTR9 | Affinity Capture-Western | 20178742 | 9606 | 9606 | BIOGRID |
| PAF1 | LEO1 | Affinity Capture-Western | 20178742 | 9606 | 9606 | BIOGRID |
| PAF1 | POLR2A | Reconstituted Complex | 20178742 | 9606 | 9606 | BIOGRID |
| PAF1 | CHD1 | Affinity Capture-Western | 22046413 | 9606 | 9606 | BIOGRID |
| PAF1 | CDC73 | Affinity Capture-MS | 20305087 | 9606 | 9606 | BIOGRID |
| PAF1 | CTR9 | Affinity Capture-MS | 20305087 | 9606 | 9606 | BIOGRID |
| PAF1 | LEO1 | Affinity Capture-MS | 20305087 | 9606 | 9606 | BIOGRID |
| PAF1 | WDR61 | Affinity Capture-MS | 20305087 | 9606 | 9606 | BIOGRID |
| PAF1 | HIST1H3A | Reconstituted Complex | 22451921 | 9606 | 9606 | BIOGRID |
| PAF1 | CDC73 | Affinity Capture-Western | 21726809 | 9606 | 9606 | BIOGRID |
| PAF1 | CTR9 | Affinity Capture-Western | 21726809 | 9606 | 9606 | BIOGRID |
| PAF1 | LEO1 | Affinity Capture-Western | 21726809 | 9606 | 9606 | BIOGRID |
| PAF1 | UBE2E1 | Affinity Capture-Western | 16307923 | 9606 | 9606 | BIOGRID |
| PAF1 | RNF20 | Affinity Capture-Western | 16307923 | 9606 | 9606 | BIOGRID |
| PAF1 | RTF1 | Co-fractionation | 22939629 | 9606 | 9606 | BIOGRID |
| PAF1 | SUPT16H | Co-fractionation | 22939629 | 9606 | 9606 | BIOGRID |
| PAF1 | SSRP1 | Co-fractionation | 22939629 | 9606 | 9606 | BIOGRID |
| PAF1 | ZC3H4 | Co-fractionation | 22939629 | 9606 | 9606 | BIOGRID |
| PAF1 | DNMT3A | Affinity Capture-Western | 21406692 | 9606 | 9606 | BIOGRID |
| PAF1 | DNMT3B | Affinity Capture-Western | 21406692 | 9606 | 9606 | BIOGRID |
| PAF1 | POLR2A | Affinity Capture-Western | 24360965 | 9606 | 9606 | BIOGRID |
| PAF1 | MSL1 | Co-fractionation | 24837678 | 9606 | 9606 | BIOGRID |
| PAF1 | RNF40 | Co-fractionation | 24837678 | 9606 | 9606 | BIOGRID |
| PAF1 | RNF20 | Co-fractionation | 24837678 | 9606 | 9606 | BIOGRID |
| PAF1 | MSL2 | Co-fractionation | 24837678 | 9606 | 9606 | BIOGRID |
| PAF1 | MSL1 | Reconstituted Complex | 24837678 | 9606 | 9606 | BIOGRID |
| PAF1 | MSL2 | Reconstituted Complex | 24837678 | 9606 | 9606 | BIOGRID |
| PAF1 | RNF20 | Reconstituted Complex | 24837678 | 9606 | 9606 | BIOGRID |
| PAF1 | POLR2A | Co-fractionation | 24837678 | 9606 | 9606 | BIOGRID |
| PAF1 | LEO1 | Two-hybrid | 25416956 | 9606 | 9606 | BIOGRID |
| PAF1 | CDK9 | Co-fractionation | 24837678 | 9606 | 9606 | BIOGRID |
| PAF1 | CDC7 | Co-fractionation | 26344197 | 9606 | 9606 | BIOGRID |
| PAF1 | CDC73 | Co-fractionation | 26344197 | 9606 | 9606 | BIOGRID |
| PAF1 | CHD1 | Co-fractionation | 26344197 | 9606 | 9606 | BIOGRID |
| PAF1 | CHD2 | Co-fractionation | 26344197 | 9606 | 9606 | BIOGRID |
| PAF1 | CTR9 | Co-fractionation | 26344197 | 9606 | 9606 | BIOGRID |
| PAF1 | RTF1 | Co-fractionation | 26344197 | 9606 | 9606 | BIOGRID |
| PAF1 | SRRM1 | Co-fractionation | 26344197 | 9606 | 9606 | BIOGRID |
| PAF1 | SUPT16H | Co-fractionation | 26344197 | 9606 | 9606 | BIOGRID |
| PAF1 | WDR61 | Co-fractionation | 26344197 | 9606 | 9606 | BIOGRID |
| PAF1 | FXR2 | Two-hybrid | 21516116 | 9606 | 9606 | BIOGRID |
| PAF1 | CTR9 | Affinity Capture-Western | 30228257 | 9606 | 9606 | BIOGRID |
| PAF1 | SMARCD3 | Negative Genetic | 28481362 | 9606 | 9606 | BIOGRID |
| PAF1 | PHC3 | Negative Genetic | 28481362 | 9606 | 9606 | BIOGRID |
| PAF1 | PHC1 | Negative Genetic | 28481362 | 9606 | 9606 | BIOGRID |
| PAF1 | RTF1 | Positive Genetic | 28481362 | 9606 | 9606 | BIOGRID |
| PAF1 | TRRAP | Positive Genetic | 28481362 | 9606 | 9606 | BIOGRID |
| PAF1 | THOC2 | Positive Genetic | 28481362 | 9606 | 9606 | BIOGRID |
| PAF1 | RUVBL1 | Positive Genetic | 28481362 | 9606 | 9606 | BIOGRID |
| PAF1 | LEO1 | Two-hybrid | 32296183 | 9606 | 9606 | BIOGRID |
| PAF1 | PC | Affinity Capture-MS | 24981860 | 9606 | 9606 | BIOGRID |
| PAF1 | COX7A2 | Affinity Capture-MS | 24981860 | 9606 | 9606 | BIOGRID |
| PAF1 | MCCC2 | Affinity Capture-MS | 24981860 | 9606 | 9606 | BIOGRID |
Annotation of PAF1
TCGA cancer survival map of PAF1
Expression of PAF1
Disease information of PAF1