TcoF overview
| TcoF: | SAFB | |
| GeneID: | 59343 | |
| Name: | Scaffold attachment factor B1 | |
| Ensembl: | ENSG00000160633 | |
| Species: | Human | |
| Class: | class 2 | |
| Family: | Others | |
| Disease: | 0 | |
| Go term: | 14 | |
| Pathway: | 2 | |
| Hallmark: | -- | |
| Super Enhancer: |
chr19:5620763-5629532 chr19:5620903-5625683 chr19:5620983-5625861 chr19:5620141-5633648 chr19:5619706-5635055 chr19:5621311-5625289 |
|
| Enhancer: |
chr19:5690610-5691330 chr19:5691460-5691540 chr19:5691680-5691840 chr19:5692220-5693300 chr19:5696770-5699030 chr19:5587990-5590280 chr19:5594190-5595370 chr19:5584520-5587000 chr19:5893300-5894680 chr19:5896590-5896910 chr19:5897010-5898020 chr19:5914320-5914390 chr19:5915160-5915230 chr19:5397510-5398850 chr19:5483920-5485520 chr19:5492350-5493560 chr19:5498850-5500090 chr19:5539040-5540110 chr19:5536000-5538500 chr19:5556030-5558170 chr19:5694910-5696060 chr19:5790350-5791060 chr19:5828340-5830640 chr19:5925750-5927970 chr19:5928100-5930220 chr19:5693470-5693560 chr19:5693780-5694390 chr19:5132020-5133890 chr19:5137690-5137970 chr19:5150460-5151340 chr19:5225860-5226450 chr19:5237030-5238920 chr19:5250080-5252300 chr19:5270710-5271570 chr19:5364300-5365140 chr19:5369160-5370520 chr19:5377460-5378040 chr19:5479870-5481000 chr19:5667460-5667830 chr19:5667900-5668170 chr19:5696180-5696250 chr19:6017590-6019840 chr19:6166030-6167050 chr19:5191910-5194300 chr19:5430220-5430740 chr19:5694560-5694770 chr19:5696380-5696680 chr19:5699220-5700790 chr19:5706000-5707070 chr19:5707160-5707700 chr19:5707840-5708350 chr19:5712010-5713140 chr19:5784060-5784380 chr19:5784450-5784540 chr19:5789780-5790050 chr19:5641960-5643720 chr19:5767380-5768170 chr19:5946170-5948320 chr19:5631170-5633600 chr19:5934600-5936680 chr19:5964920-5966940 chr19:6029580-6031020 chr19:6075100-6075920 chr19:5260470-5260810 chr19:5260830-5262250 chr19:5286760-5289190 chr19:5289380-5290310 chr19:5290490-5291040 chr19:5297600-5299500 chr19:5640700-5641600 chr19:5850460-5851400 chr19:5307920-5310380 chr19:5615660-5616140 chr19:5737940-5738980 chr19:5914500-5914570 chr19:6161310-6163540 chr19:5894870-5896460 chr19:5469870-5471070 chr19:5563500-5565250 chr19:5889020-5891280 chr19:5914750-5914950 chr19:5881690-5882820 chr19:5703140-5705030 chr19:5950670-5951400 chr19:6075950-6078210 chr19:5352050-5353000 chr19:5602430-5604590 chr19:5641670-5641750 chr19:5472130-5473000 chr19:5955900-5957920 chr19:5579350-5581220 chr19:5581900-5582550 chr19:5776920-5778380 |
|
| Promoter: |
chr19:5623046-5668489 |
ChIP-seq based regulatory details of SAFB
| Sample ID | Experiment target | Biosample type | Biosample term name | GSM ID | Tissue type | Source |
|---|---|---|---|---|---|---|
| TcoF_00_10080 | SAFB | cell line | K562 | - | Bone Marrow | ENCODE |
| TcoF_00_40455 | SAFB | cell line | K-562 | - | Bone Marrow | ReMap |
Downstream target genes of SAFB
Upstream regulatory details of SAFB
Protein-protein interaction of SAFB
| OFFICIAL_SYMBOL_A | OFFICIAL_SYMBOL_B | EXPERIMENTAL_SYSTEM | PUBMED_ID | ORGANISM_A_ID | ORGANISM_B_ID | SOURCE |
|---|---|---|---|---|---|---|
| SAFB | SAFB2 | Two-hybrid | 12660241 | 9606 | 9606 | BIOGRID |
| SAFB | TAF15 | Reconstituted Complex | 15066997 | 9606 | 9606 | BIOGRID |
| SAFB | ESR1 | Reconstituted Complex | 15066997 | 9606 | 9606 | BIOGRID |
| SAFB | SAFB2 | Affinity Capture-Western | 12660241 | 9606 | 9606 | BIOGRID |
| SAFB | CHD3 | Two-hybrid | 16169070 | 9606 | 9606 | BIOGRID |
| SAFB | ESR1 | Affinity Capture-Western | 10707955 | 9606 | 9606 | BIOGRID |
| SAFB | ESR1 | Reconstituted Complex | 10707955 | 9606 | 9606 | BIOGRID |
| SAFB | NCOR1 | Affinity Capture-Western | 16195251 | 9606 | 9606 | BIOGRID |
| SAFB | NCOR1 | Reconstituted Complex | 16195251 | 9606 | 9606 | BIOGRID |
| SAFB | NCOR1 | Two-hybrid | 16195251 | 9606 | 9606 | BIOGRID |
| SAFB | NCOR1 | Affinity Capture-Western | 21527249 | 9606 | 9606 | BIOGRID |
| SAFB | HDAC3 | Affinity Capture-Western | 21527249 | 9606 | 9606 | BIOGRID |
| SAFB | PIAS1 | Affinity Capture-Western | 21527249 | 9606 | 9606 | BIOGRID |
| SAFB | ESR1 | Affinity Capture-Western | 21527249 | 9606 | 9606 | BIOGRID |
| SAFB | SAP18 | Co-fractionation | 22939629 | 9606 | 9606 | BIOGRID |
| SAFB | SMU1 | Co-fractionation | 22939629 | 9606 | 9606 | BIOGRID |
| SAFB | TPBG | Co-fractionation | 22939629 | 9606 | 9606 | BIOGRID |
| SAFB | TRIM55 | Co-fractionation | 22939629 | 9606 | 9606 | BIOGRID |
| SAFB | U2AF1 | Co-fractionation | 22939629 | 9606 | 9606 | BIOGRID |
| SAFB | SON | Co-fractionation | 22939629 | 9606 | 9606 | BIOGRID |
| SAFB | TRMT112 | Co-fractionation | 22939629 | 9606 | 9606 | BIOGRID |
| SAFB | SEPT7 | Co-fractionation | 22939629 | 9606 | 9606 | BIOGRID |
| SAFB | UTP14A | Co-fractionation | 22939629 | 9606 | 9606 | BIOGRID |
| SAFB | VTN | Co-fractionation | 22939629 | 9606 | 9606 | BIOGRID |
| SAFB | ZC3H18 | Co-fractionation | 22939629 | 9606 | 9606 | BIOGRID |
| SAFB | USP39 | Co-fractionation | 22939629 | 9606 | 9606 | BIOGRID |
| SAFB | TMOD2 | Co-fractionation | 22939629 | 9606 | 9606 | BIOGRID |
| SAFB | VASN | Co-fractionation | 22939629 | 9606 | 9606 | BIOGRID |
| SAFB | SRSF7 | Co-fractionation | 22939629 | 9606 | 9606 | BIOGRID |
| SAFB | ACAT1 | Co-fractionation | 22939629 | 9606 | 9606 | BIOGRID |
| SAFB | U2AF2 | Co-fractionation | 22939629 | 9606 | 9606 | BIOGRID |
| SAFB | SURF4 | Co-fractionation | 22939629 | 9606 | 9606 | BIOGRID |
| SAFB | IL7R | Protein-RNA | 23151878 | 9606 | 9606 | BIOGRID |
| SAFB | TP53 | Affinity Capture-Western | 21130767 | 9606 | 9606 | BIOGRID |
| SAFB | HNRNPU | Co-fractionation | 26344197 | 9606 | 9606 | BIOGRID |
| SAFB | HNRNPUL1 | Co-fractionation | 26344197 | 9606 | 9606 | BIOGRID |
| SAFB | MCM4 | Co-fractionation | 26344197 | 9606 | 9606 | BIOGRID |
| SAFB | P4HB | Co-fractionation | 26344197 | 9606 | 9606 | BIOGRID |
| SAFB | KRI1 | Proximity Label-MS | 30021884 | 9606 | 9606 | BIOGRID |
Annotation of SAFB
TCGA cancer survival map of SAFB
Expression of SAFB
Disease information of SAFB