TcoF overview
TcoF: SMARCA5
GeneID: 6598
Name: SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5
Ensembl: ENSG00000153147
Species: Human
Class: NA
Family: SWI/SNF
Disease: 1
Go term: 24
Pathway: 4
Hallmark: 1
Super Enhancer:

chr4:144433607-144436481 chr4:144434080-144436393 chr4:144433817-144437059 chr4:144433598-144436323 chr4:144434167-144436314

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Enhancer:

chr4:144355780-144357420 chr4:144507150-144508580 chr4:144435380-144435590 chr4:144403830-144404390 chr4:144352560-144353920 chr4:144107290-144108970 chr4:144206730-144209160 chr4:144258410-144260260 chr4:144282460-144283320 chr4:144283580-144284110 chr4:144305510-144307320 chr4:144310520-144311210 chr4:144311550-144313820 chr4:144309970-144310320 chr4:143880050-143880930 chr4:143975480-143976010 chr4:144201990-144204250 chr4:144214920-144216900 chr4:144323500-144324940 chr4:144145030-144146990 chr4:144325660-144327360 chr4:144588190-144590630 chr4:144174180-144175100 chr4:144263980-144266360 chr4:144267200-144267950 chr4:144268520-144270540 chr4:144272450-144274670 chr4:144399580-144400730 chr4:144452160-144454040 chr4:144556600-144557210 chr4:144563810-144565460 chr4:144573860-144574500 chr4:144593970-144595660 chr4:144614840-144615730 chr4:144634150-144636280 chr4:144504810-144505570 chr4:144657950-144660300 chr4:144800220-144801260 chr4:144805900-144806900 chr4:144825480-144825970 chr4:144826040-144826620 chr4:144262360-144263440 chr4:144362920-144363230 chr4:144161660-144163880 chr4:144331900-144334030

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Promoter:

chr4:144434855-144478639

False
 ChIP-seq based regulatory details of SMARCA5
select * from encode where Experiment_target='SMARCA5'
Sample ID Experiment target Biosample type Biosample term name GSM ID Tissue type Source
TcoF_00_40163 SMARCA5 cell line K-562 - Bone Marrow ReMap
TcoF_00_40116 SMARCA5 cell line MCF-7 - Breast ReMap
TcoF_00_40142 SMARCA5 cell line GM12878 - Blood ReMap
TcoF_00_30561 SMARCA5 cell line LNCAP GSM1868495 Prostate ChIP-Atlas
 Downstream target genes of SMARCA5
 Protein-protein interaction of SMARCA5
OFFICIAL_SYMBOL_A OFFICIAL_SYMBOL_B EXPERIMENTAL_SYSTEM PUBMED_ID ORGANISM_A_ID ORGANISM_B_ID SOURCE
SMARCA5 BAZ1A Co-purification 10655480 9606 9606 BIOGRID
SMARCA5 BAZ1A Affinity Capture-Western 10655480 9606 9606 BIOGRID
SMARCA5 BAZ1A Co-purification 10880450 9606 9606 BIOGRID
SMARCA5 POLE3 Co-purification 10880450 9606 9606 BIOGRID
SMARCA5 CHRAC1 Co-purification 10880450 9606 9606 BIOGRID
SMARCA5 BAZ1A Affinity Capture-Western 10880450 9606 9606 BIOGRID
SMARCA5 POLE3 Affinity Capture-Western 10880450 9606 9606 BIOGRID
SMARCA5 CHRAC1 Affinity Capture-Western 10880450 9606 9606 BIOGRID
SMARCA5 BAZ1A Affinity Capture-Western 11980720 9606 9606 BIOGRID
SMARCA5 BAZ1B Affinity Capture-Western 11980720 9606 9606 BIOGRID
SMARCA5 BAZ1A Reconstituted Complex 12374985 9606 9606 BIOGRID
SMARCA5 SATB1 Reconstituted Complex 12374985 9606 9606 BIOGRID
SMARCA5 BAZ1A Co-purification 12198550 9606 9606 BIOGRID
SMARCA5 RAD21 Co-purification 12198550 9606 9606 BIOGRID
SMARCA5 HDAC2 Co-purification 12198550 9606 9606 BIOGRID
SMARCA5 RBBP4 Co-purification 12198550 9606 9606 BIOGRID
SMARCA5 CHD3 Co-purification 12198550 9606 9606 BIOGRID
SMARCA5 SMC1A Co-purification 12198550 9606 9606 BIOGRID
SMARCA5 SMC3 Co-purification 12198550 9606 9606 BIOGRID
SMARCA5 HIST1H4A Affinity Capture-Western 16917504 9606 9606 BIOGRID
SMARCA5 MAF Affinity Capture-Western 16675956 9606 9606 BIOGRID
SMARCA5 CREB1 Affinity Capture-Western 16675956 9606 9606 BIOGRID
SMARCA5 MYO1C Affinity Capture-Western 16514417 9606 9606 BIOGRID
SMARCA5 SIN3A Affinity Capture-Western 18535655 9606 9606 BIOGRID
SMARCA5 HDAC2 Affinity Capture-Western 15775975 9606 9606 BIOGRID
SMARCA5 HDAC2 Co-localization 15775975 9606 9606 BIOGRID
SMARCA5 MCM3 Co-localization 15775975 9606 9606 BIOGRID
SMARCA5 HIST2H2AB Affinity Capture-Western 11691835 9606 9606 BIOGRID
SMARCA5 HIST1H3A Affinity Capture-Western 11691835 9606 9606 BIOGRID
SMARCA5 HIST1H4A Affinity Capture-Western 11691835 9606 9606 BIOGRID
SMARCA5 DNMT1 Affinity Capture-Western 15313181 9606 9606 BIOGRID
SMARCA5 DNMT3B Affinity Capture-Western 15120635 9606 9606 BIOGRID
SMARCA5 DNMT3B Reconstituted Complex 15120635 9606 9606 BIOGRID
SMARCA5 CECR2 Affinity Capture-Western 22154806 9606 9606 BIOGRID
SMARCA5 CDT1 Affinity Capture-Western 21937426 9606 9606 BIOGRID
SMARCA5 CEBPB Affinity Capture-Western 22242598 9606 9606 BIOGRID
SMARCA5 SMARCC2 Co-fractionation 22939629 9606 9606 BIOGRID
SMARCA5 SMARCC1 Co-fractionation 22939629 9606 9606 BIOGRID
SMARCA5 RNF168 Affinity Capture-Western 23264744 9606 9606 BIOGRID
SMARCA5 RSF1 Affinity Capture-Western 12972596 9606 9606 BIOGRID
SMARCA5 BAZ1A Co-purification 10747848 9606 9606 BIOGRID
SMARCA5 RSF1 Co-fractionation 10747848 9606 9606 BIOGRID
SMARCA5 SMARCA5 Co-fractionation 10747848 9606 9606 BIOGRID
SMARCA5 RSF1 Affinity Capture-Western 10747848 9606 9606 BIOGRID
SMARCA5 SMARCA5 Affinity Capture-Western 10747848 9606 9606 BIOGRID
SMARCA5 BAZ1A Affinity Capture-Western 10747848 9606 9606 BIOGRID
SMARCA5 BAZ1A Co-fractionation 10747848 9606 9606 BIOGRID
SMARCA5 CHRAC1 Co-fractionation 26344197 9606 9606 BIOGRID
SMARCA5 COPS3 Co-fractionation 26344197 9606 9606 BIOGRID
SMARCA5 HDAC2 Co-fractionation 26344197 9606 9606 BIOGRID
SMARCA5 INO80 Co-fractionation 26344197 9606 9606 BIOGRID
SMARCA5 IPO9 Co-fractionation 26344197 9606 9606 BIOGRID
SMARCA5 POLE3 Co-fractionation 26344197 9606 9606 BIOGRID
SMARCA5 POLR1C Co-fractionation 26344197 9606 9606 BIOGRID
SMARCA5 POLR3A Co-fractionation 26344197 9606 9606 BIOGRID
SMARCA5 RBBP4 Co-fractionation 26344197 9606 9606 BIOGRID
SMARCA5 RUVBL1 Co-fractionation 26344197 9606 9606 BIOGRID
SMARCA5 BAZ1A Affinity Capture-Western 25533843 9606 9606 BIOGRID
SMARCA5 BEND3 Affinity Capture-Western 26100909 9606 9606 BIOGRID
SMARCA5 BAZ1B Affinity Capture-Western 23555303 9606 9606 BIOGRID
SMARCA5 MYO1C Affinity Capture-Western 23555303 9606 9606 BIOGRID
SMARCA5 RSF1 Affinity Capture-Western 26666816 9606 9606 BIOGRID
SMARCA5 SIRT6 Affinity Capture-Western 23240041 9606 9606 BIOGRID
SMARCA5 SRSF12 Proximity Label-MS 30021884 9606 9606 BIOGRID
SMARCA5 KAT2A Proximity Label-MS 30021884 9606 9606 BIOGRID
SMARCA5 SMC6 Proximity Label-MS 30021884 9606 9606 BIOGRID
SMARCA5 BAZ1B Proximity Label-MS 30021884 9606 9606 BIOGRID
SMARCA5 HB-1 Two-hybrid 23691993 9606 3702 BIOGRID
SMARCA5 AT5G35210 Two-hybrid 23691993 9606 3702 BIOGRID
 Annotation of SMARCA5
 TCGA cancer survival map of SMARCA5


Calculate the hazards ratio based on Cox PH Model.
Add the 95% CI as dotted line.
Reset Add The plot axis-x order will follow the list.


Calculate the hazards ratio based on Cox PH Model.
We use log2(TPM + 1) for log-scale.
All Add
Reset The plot is based on the datasets of list.


 Disease information of  SMARCA5