TcoF overview
| TcoF: | SMARCA5 | |
| GeneID: | 6598 | |
| Name: | SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 | |
| Ensembl: | ENSG00000153147 | |
| Species: | Human | |
| Class: | NA | |
| Family: | SWI/SNF | |
| Disease: | 1 | |
| Go term: | 24 | |
| Pathway: | 4 | |
| Hallmark: | 1 | |
| Super Enhancer: |
chr4:144433607-144436481 chr4:144434080-144436393 chr4:144433817-144437059 chr4:144433598-144436323 chr4:144434167-144436314 |
|
| Enhancer: |
chr4:144355780-144357420 chr4:144507150-144508580 chr4:144435380-144435590 chr4:144403830-144404390 chr4:144352560-144353920 chr4:144107290-144108970 chr4:144206730-144209160 chr4:144258410-144260260 chr4:144282460-144283320 chr4:144283580-144284110 chr4:144305510-144307320 chr4:144310520-144311210 chr4:144311550-144313820 chr4:144309970-144310320 chr4:143880050-143880930 chr4:143975480-143976010 chr4:144201990-144204250 chr4:144214920-144216900 chr4:144323500-144324940 chr4:144145030-144146990 chr4:144325660-144327360 chr4:144588190-144590630 chr4:144174180-144175100 chr4:144263980-144266360 chr4:144267200-144267950 chr4:144268520-144270540 chr4:144272450-144274670 chr4:144399580-144400730 chr4:144452160-144454040 chr4:144556600-144557210 chr4:144563810-144565460 chr4:144573860-144574500 chr4:144593970-144595660 chr4:144614840-144615730 chr4:144634150-144636280 chr4:144504810-144505570 chr4:144657950-144660300 chr4:144800220-144801260 chr4:144805900-144806900 chr4:144825480-144825970 chr4:144826040-144826620 chr4:144262360-144263440 chr4:144362920-144363230 chr4:144161660-144163880 chr4:144331900-144334030 |
|
| Promoter: |
chr4:144434855-144478639 |
ChIP-seq based regulatory details of SMARCA5
| Sample ID | Experiment target | Biosample type | Biosample term name | GSM ID | Tissue type | Source |
|---|---|---|---|---|---|---|
| TcoF_00_40163 | SMARCA5 | cell line | K-562 | - | Bone Marrow | ReMap |
| TcoF_00_40116 | SMARCA5 | cell line | MCF-7 | - | Breast | ReMap |
| TcoF_00_40142 | SMARCA5 | cell line | GM12878 | - | Blood | ReMap |
| TcoF_00_30561 | SMARCA5 | cell line | LNCAP | GSM1868495 | Prostate | ChIP-Atlas |
Downstream target genes of SMARCA5
Upstream regulatory details of SMARCA5
Protein-protein interaction of SMARCA5
| OFFICIAL_SYMBOL_A | OFFICIAL_SYMBOL_B | EXPERIMENTAL_SYSTEM | PUBMED_ID | ORGANISM_A_ID | ORGANISM_B_ID | SOURCE |
|---|---|---|---|---|---|---|
| SMARCA5 | BAZ1A | Co-purification | 10655480 | 9606 | 9606 | BIOGRID |
| SMARCA5 | BAZ1A | Affinity Capture-Western | 10655480 | 9606 | 9606 | BIOGRID |
| SMARCA5 | BAZ1A | Co-purification | 10880450 | 9606 | 9606 | BIOGRID |
| SMARCA5 | POLE3 | Co-purification | 10880450 | 9606 | 9606 | BIOGRID |
| SMARCA5 | CHRAC1 | Co-purification | 10880450 | 9606 | 9606 | BIOGRID |
| SMARCA5 | BAZ1A | Affinity Capture-Western | 10880450 | 9606 | 9606 | BIOGRID |
| SMARCA5 | POLE3 | Affinity Capture-Western | 10880450 | 9606 | 9606 | BIOGRID |
| SMARCA5 | CHRAC1 | Affinity Capture-Western | 10880450 | 9606 | 9606 | BIOGRID |
| SMARCA5 | BAZ1A | Affinity Capture-Western | 11980720 | 9606 | 9606 | BIOGRID |
| SMARCA5 | BAZ1B | Affinity Capture-Western | 11980720 | 9606 | 9606 | BIOGRID |
| SMARCA5 | BAZ1A | Reconstituted Complex | 12374985 | 9606 | 9606 | BIOGRID |
| SMARCA5 | SATB1 | Reconstituted Complex | 12374985 | 9606 | 9606 | BIOGRID |
| SMARCA5 | BAZ1A | Co-purification | 12198550 | 9606 | 9606 | BIOGRID |
| SMARCA5 | RAD21 | Co-purification | 12198550 | 9606 | 9606 | BIOGRID |
| SMARCA5 | HDAC2 | Co-purification | 12198550 | 9606 | 9606 | BIOGRID |
| SMARCA5 | RBBP4 | Co-purification | 12198550 | 9606 | 9606 | BIOGRID |
| SMARCA5 | CHD3 | Co-purification | 12198550 | 9606 | 9606 | BIOGRID |
| SMARCA5 | SMC1A | Co-purification | 12198550 | 9606 | 9606 | BIOGRID |
| SMARCA5 | SMC3 | Co-purification | 12198550 | 9606 | 9606 | BIOGRID |
| SMARCA5 | HIST1H4A | Affinity Capture-Western | 16917504 | 9606 | 9606 | BIOGRID |
| SMARCA5 | MAF | Affinity Capture-Western | 16675956 | 9606 | 9606 | BIOGRID |
| SMARCA5 | CREB1 | Affinity Capture-Western | 16675956 | 9606 | 9606 | BIOGRID |
| SMARCA5 | MYO1C | Affinity Capture-Western | 16514417 | 9606 | 9606 | BIOGRID |
| SMARCA5 | SIN3A | Affinity Capture-Western | 18535655 | 9606 | 9606 | BIOGRID |
| SMARCA5 | HDAC2 | Affinity Capture-Western | 15775975 | 9606 | 9606 | BIOGRID |
| SMARCA5 | HDAC2 | Co-localization | 15775975 | 9606 | 9606 | BIOGRID |
| SMARCA5 | MCM3 | Co-localization | 15775975 | 9606 | 9606 | BIOGRID |
| SMARCA5 | HIST2H2AB | Affinity Capture-Western | 11691835 | 9606 | 9606 | BIOGRID |
| SMARCA5 | HIST1H3A | Affinity Capture-Western | 11691835 | 9606 | 9606 | BIOGRID |
| SMARCA5 | HIST1H4A | Affinity Capture-Western | 11691835 | 9606 | 9606 | BIOGRID |
| SMARCA5 | DNMT1 | Affinity Capture-Western | 15313181 | 9606 | 9606 | BIOGRID |
| SMARCA5 | DNMT3B | Affinity Capture-Western | 15120635 | 9606 | 9606 | BIOGRID |
| SMARCA5 | DNMT3B | Reconstituted Complex | 15120635 | 9606 | 9606 | BIOGRID |
| SMARCA5 | CECR2 | Affinity Capture-Western | 22154806 | 9606 | 9606 | BIOGRID |
| SMARCA5 | CDT1 | Affinity Capture-Western | 21937426 | 9606 | 9606 | BIOGRID |
| SMARCA5 | CEBPB | Affinity Capture-Western | 22242598 | 9606 | 9606 | BIOGRID |
| SMARCA5 | SMARCC2 | Co-fractionation | 22939629 | 9606 | 9606 | BIOGRID |
| SMARCA5 | SMARCC1 | Co-fractionation | 22939629 | 9606 | 9606 | BIOGRID |
| SMARCA5 | RNF168 | Affinity Capture-Western | 23264744 | 9606 | 9606 | BIOGRID |
| SMARCA5 | RSF1 | Affinity Capture-Western | 12972596 | 9606 | 9606 | BIOGRID |
| SMARCA5 | BAZ1A | Co-purification | 10747848 | 9606 | 9606 | BIOGRID |
| SMARCA5 | RSF1 | Co-fractionation | 10747848 | 9606 | 9606 | BIOGRID |
| SMARCA5 | SMARCA5 | Co-fractionation | 10747848 | 9606 | 9606 | BIOGRID |
| SMARCA5 | RSF1 | Affinity Capture-Western | 10747848 | 9606 | 9606 | BIOGRID |
| SMARCA5 | SMARCA5 | Affinity Capture-Western | 10747848 | 9606 | 9606 | BIOGRID |
| SMARCA5 | BAZ1A | Affinity Capture-Western | 10747848 | 9606 | 9606 | BIOGRID |
| SMARCA5 | BAZ1A | Co-fractionation | 10747848 | 9606 | 9606 | BIOGRID |
| SMARCA5 | CHRAC1 | Co-fractionation | 26344197 | 9606 | 9606 | BIOGRID |
| SMARCA5 | COPS3 | Co-fractionation | 26344197 | 9606 | 9606 | BIOGRID |
| SMARCA5 | HDAC2 | Co-fractionation | 26344197 | 9606 | 9606 | BIOGRID |
| SMARCA5 | INO80 | Co-fractionation | 26344197 | 9606 | 9606 | BIOGRID |
| SMARCA5 | IPO9 | Co-fractionation | 26344197 | 9606 | 9606 | BIOGRID |
| SMARCA5 | POLE3 | Co-fractionation | 26344197 | 9606 | 9606 | BIOGRID |
| SMARCA5 | POLR1C | Co-fractionation | 26344197 | 9606 | 9606 | BIOGRID |
| SMARCA5 | POLR3A | Co-fractionation | 26344197 | 9606 | 9606 | BIOGRID |
| SMARCA5 | RBBP4 | Co-fractionation | 26344197 | 9606 | 9606 | BIOGRID |
| SMARCA5 | RUVBL1 | Co-fractionation | 26344197 | 9606 | 9606 | BIOGRID |
| SMARCA5 | BAZ1A | Affinity Capture-Western | 25533843 | 9606 | 9606 | BIOGRID |
| SMARCA5 | BEND3 | Affinity Capture-Western | 26100909 | 9606 | 9606 | BIOGRID |
| SMARCA5 | BAZ1B | Affinity Capture-Western | 23555303 | 9606 | 9606 | BIOGRID |
| SMARCA5 | MYO1C | Affinity Capture-Western | 23555303 | 9606 | 9606 | BIOGRID |
| SMARCA5 | RSF1 | Affinity Capture-Western | 26666816 | 9606 | 9606 | BIOGRID |
| SMARCA5 | SIRT6 | Affinity Capture-Western | 23240041 | 9606 | 9606 | BIOGRID |
| SMARCA5 | SRSF12 | Proximity Label-MS | 30021884 | 9606 | 9606 | BIOGRID |
| SMARCA5 | KAT2A | Proximity Label-MS | 30021884 | 9606 | 9606 | BIOGRID |
| SMARCA5 | SMC6 | Proximity Label-MS | 30021884 | 9606 | 9606 | BIOGRID |
| SMARCA5 | BAZ1B | Proximity Label-MS | 30021884 | 9606 | 9606 | BIOGRID |
| SMARCA5 | HB-1 | Two-hybrid | 23691993 | 9606 | 3702 | BIOGRID |
| SMARCA5 | AT5G35210 | Two-hybrid | 23691993 | 9606 | 3702 | BIOGRID |
Annotation of SMARCA5
TCGA cancer survival map of SMARCA5
Expression of SMARCA5
Disease information of SMARCA5