TcoF overview
| TcoF: | Smarca2 | |
| GeneID: | 67155 | |
| Name: | Probable global transcription activator SNF2L2 | |
| Ensembl: | ENSMUSG00000024921 | |
| Species: | Mouse | |
| Class: | NA | |
| Family: | SWI/SNF | |
| Disease: | -- | |
| Go-trem: | 26 | |
| Pathway: | 4 | |
| Super Enhancer: | chr19:26645637-26647008 chr19:26665843-26667376 chr19:26622367-26623536 chr19:26612648-26618231 chr19:26698346-26700051 chr19:26643008-26643473 chr19:26674266-26677395 chr19:26717841-26734312 chr19:26642812-26645503 chr19:26612928-26618127 chr19:26643722-26652657 chr19:26681634-26684140 chr19:26678550-26682130 chr19:26507750-26510276 chr19:26612535-26614556 chr19:26382640-26383535 chr19:26716023-26717141 chr19:26323831-26324705 chr19:26731045-26731789 chr19:26651097-26651483 chr19:26723305-26734532 chr19:26704872-26706885 chr19:26475617-26476720 chr19:26715646-26717063 chr19:26296074-26296778 chr19:26507652-26510250 chr19:26730654-26734135 chr19:26308149-26309075 chr19:26382674-26383429 chr19:26630466-26631183 chr19:26715857-26716486 chr19:26532249-26532824 chr19:26447077-26447594 chr19:26706063-26706779 chr19:26705346-26706589 chr19:26704491-26734359 chr19:26612454-26614174 chr19:26632935-26643945 chr19:26611527-26614871 chr19:26509341-26510584 chr19:26678638-26680083 chr19:26704889-26710886 chr19:26579243-26589977 chr19:26613157-26614239 chr19:26613214-26614265 chr19:26234728-26235359 chr19:26645762-26646753 chr19:26706902-26707375 chr19:26258178-26258829 chr19:26611778-26623816 chr19:26640252-26644937 chr19:26722743-26724417 chr19:26465465-26468220 chr19:26507790-26510345 chr19:26678591-26680479 chr19:26734299-26735551 chr19:26630523-26631696 chr19:26382643-26383233 chr19:26532413-26533010 chr19:26643700-26651522 chr19:26681920-26684351 chr19:26503183-26507418 chr19:26524354-26525177 chr19:26414419-26415326 chr19:26296102-26296976 chr19:26483509-26484657 chr19:26601265-26602088 chr19:26608372-26608787 chr19:26706900-26707360 chr19:26727736-26728064 chr19:26612878-26614146 chr19:26669836-26670545 chr19:26612866-26613417 chr19:26670028-26670503 chr19:26727556-26756854 chr19:26612832-26617823 chr19:26705552-26707566 chr19:26609554-26614230 chr19:26631161-26643968 chr19:26666132-26670521 chr19:26706734-26707362 chr19:26345705-26346042 chr19:26660207-26660376 |
|
| Enhancer: |
chr19:26653600-26654650 chr19:26823030-26824340 chr19:26824430-26825610 chr19:26825640-26826200 chr19:26861380-26866680 chr19:26893820-26896100 chr19:26911420-26913450 chr19:26937600-26939020 chr19:26965200-26969150 chr19:26823030-26823780 chr19:26750320-26750710 chr19:26823030-26823640 chr19:26824430-26825000 chr19:26843590-26845420 chr19:26846090-26846410 chr19:26947280-26947750 chr19:27140920-27141650 chr19:26541080-26542170 chr19:26679720-26683710 chr19:26720370-26721170 chr19:26719620-26721510 chr19:26679720-26683720 chr19:26823030-26823760 chr19:26720450-26721230 chr19:26823030-26823530 chr19:26827050-26828970 chr19:26679720-26683690 chr19:26715130-26721030 chr19:26747330-26751120 chr19:26751280-26752800 chr19:26752870-26753560 chr19:26753670-26755040 chr19:26827150-26829830 chr19:26841940-26842480 chr19:27139920-27143020 chr19:27114420-27116120 chr19:26717060-26719960 chr19:26748770-26751120 chr19:26751280-26752380 chr19:26807250-26809670 chr19:26716800-26719530 chr19:26823030-26824100 chr19:26679720-26683660 chr19:26552580-26553470 chr19:26940070-26940800 chr19:26824430-26825360 chr19:26824430-26824940 chr19:26823030-26823890 chr19:26823030-26823550 chr19:26586900-26587680 chr19:26717620-26717870 chr19:26965220-26966520 chr19:26824430-26825250 chr19:26843820-26845420 chr19:26939080-26941060 chr19:26643880-26644340 chr19:26653820-26655130 chr19:26656080-26656590 chr19:26823030-26824030 chr19:26826900-26829420 chr19:26829490-26831510 chr19:27008330-27010290 chr19:26639670-26641570 chr19:26656610-26657530 chr19:26679720-26683800 chr19:26842200-26843290 chr19:26619760-26621160 chr19:26624800-26625810 chr19:26778280-26779940 chr19:26780280-26780550 chr19:26780720-26781340 chr19:26824070-26824340 chr19:26824430-26824970 chr19:26827830-26828950 chr19:26843890-26845420 chr19:27149570-27149920 chr19:26549840-26551600 chr19:26619860-26625800 chr19:26778530-26779900 chr19:26801720-26802930 chr19:26823030-26823740 chr19:26639570-26641450 chr19:26940210-26941270 chr19:26965520-26966580 chr19:26679720-26684690 chr19:26824430-26825320 chr19:26826530-26830360 chr19:26830450-26831830 chr19:26781490-26781920 chr19:26801780-26802660 chr19:26826920-26831530 chr19:26965580-26966620 chr19:26679720-26689510 chr19:26890120-26896100 chr19:26705620-26708550 chr19:26717090-26718900 chr19:26740620-26741280 chr19:26781220-26781820 chr19:26824430-26825580 chr19:26846230-26847260 chr19:26849690-26850400 chr19:26886240-26887010 chr19:26719640-26721510 chr19:26680160-26683590 chr19:26705620-26705900 chr19:26823030-26823960 chr19:26938070-26942160 chr19:26965400-26966620 chr19:26540160-26543120 chr19:26717760-26721510 chr19:26823030-26823590 chr19:26720410-26721260 chr19:26823030-26823580 chr19:26925560-26926260 chr19:26940110-26940820 chr19:26965500-26966560 chr19:26697160-26698250 chr19:26718490-26721510 chr19:26826530-26829340 chr19:26719650-26721510 chr19:26826880-26828410 chr19:26614450-26615040 chr19:26683550-26683860 chr19:26720430-26721190 chr19:26656020-26656640 chr19:26893720-26895990 chr19:26940020-26940950 chr19:26773400-26774160 chr19:26790680-26791500 |
|
| Promoter: |
chr19:26603159-26607159 |
ChIP-seq based regulatory details of Smarca2
| Sample ID | Experiment target | Biosample term name | Cell type | Tissue type | Source |
|---|
Downstream target genes of Smarca2
Protein-protein interaction of Smarca2
| OFFICIAL_SYMBOL_A | OFFICIAL_SYMBOL_B | EXPERIMENTAL_SYSTEM | PUBMED_ID | ORGANISM_A_ID | ORGANISM_B_ID | SOURCE |
|---|---|---|---|---|---|---|
| Smarca2 | Nr0b2 | Affinity Capture-Western | 19805516 | 10090 | 10090 | BIOGRID |
| Smarca2 | Ss18l1 | Affinity Capture-MS | 19279220 | 10090 | 10090 | BIOGRID |
| Smarca2 | Sfpq | Affinity Capture-MS | 19279220 | 10090 | 10090 | BIOGRID |
| Smarca2 | Numa1 | Affinity Capture-MS | 19279220 | 10090 | 10090 | BIOGRID |
| Smarca2 | Nono | Affinity Capture-MS | 19279220 | 10090 | 10090 | BIOGRID |
| Smarca2 | Mybbp1a | Affinity Capture-MS | 19279220 | 10090 | 10090 | BIOGRID |
| Smarca2 | Srrm2 | Affinity Capture-MS | 19279220 | 10090 | 10090 | BIOGRID |
| Smarca2 | Brd9 | Affinity Capture-MS | 19279220 | 10090 | 10090 | BIOGRID |
| Smarca2 | Brd7 | Affinity Capture-MS | 19279220 | 10090 | 10090 | BIOGRID |
| Smarca2 | Bcl7a | Affinity Capture-MS | 19279220 | 10090 | 10090 | BIOGRID |
| Smarca2 | Gltscr1 | Affinity Capture-MS | 19279220 | 10090 | 10090 | BIOGRID |
| Smarca2 | Actg1 | Affinity Capture-MS | 19279220 | 10090 | 10090 | BIOGRID |
| Smarca2 | Actl6a | Affinity Capture-MS | 19279220 | 10090 | 10090 | BIOGRID |
| Smarca2 | Smarcb1 | Affinity Capture-MS | 19279220 | 10090 | 10090 | BIOGRID |
| Smarca2 | Smarce1 | Affinity Capture-MS | 19279220 | 10090 | 10090 | BIOGRID |
| Smarca2 | Smarcd3 | Affinity Capture-MS | 19279220 | 10090 | 10090 | BIOGRID |
| Smarca2 | Smarcd1 | Affinity Capture-MS | 19279220 | 10090 | 10090 | BIOGRID |
| Smarca2 | Smarcc1 | Affinity Capture-MS | 19279220 | 10090 | 10090 | BIOGRID |
| Smarca2 | Smarcc2 | Affinity Capture-MS | 19279220 | 10090 | 10090 | BIOGRID |
| Smarca2 | Pbrm1 | Affinity Capture-MS | 19279220 | 10090 | 10090 | BIOGRID |
| Smarca2 | Arid2 | Affinity Capture-MS | 19279220 | 10090 | 10090 | BIOGRID |
| Smarca2 | Arid1b | Affinity Capture-MS | 19279220 | 10090 | 10090 | BIOGRID |
| Smarca2 | Actl6a | Co-fractionation | 32325033 | 10090 | 10090 | BIOGRID |
| Smarca2 | Baz1b | Co-fractionation | 32325033 | 10090 | 10090 | BIOGRID |
| Smarca2 | Rbbp5 | Co-fractionation | 32325033 | 10090 | 10090 | BIOGRID |
| Smarca2 | Smarcc2 | Co-fractionation | 32325033 | 10090 | 10090 | BIOGRID |
| Smarca2 | Supt16 | Co-fractionation | 32325033 | 10090 | 10090 | BIOGRID |
| Smarca2 | Taf1 | Co-fractionation | 32325033 | 10090 | 10090 | BIOGRID |
| Smarca2 | Adnp | Affinity Capture-Western | 24489906 | 10090 | 10090 | BIOGRID |
Annotation of Smarca2
Expression of Smarca2
Disease information of Smarca2